LOC113524898 (LOC108258795,LOC108258794,LOC108258797)


Basic Information

Item Value
gene id LOC113524898
gene name LOC108258795,LOC108258794,LOC108258797
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17879085 ~ 17882173 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911275.2
GCTCAGCCTCTTACAAAGGAGGGTTTGGATTTTTGCAAGAAATGTTTTGGTAACAGAGCAAAACAGAGACGCAAATGCTACCTGTGTATCAGTTTGCAGCCGACTAATGTGACTCCTGAACAATATAATTAGCACAGaaagaatcTTCACAGATATGaatcaAGTCATGCTGCTGTTGCTGATGGCTGCGTTGTCCTTGCTGGTTCACTCGGTTCCTGCCTATAACACGTCCCTGCCGCTGGACTGTGAGGATGTTTACAACCTAAAGATAAGTGTAAAGAAGAACGCCTCTGTTCCCAGTGGAGTGTACACCATTTATCCATCAGGGTCTAATAAACCCGTGGAGGTGTACTGTGATATGGGCTGCCTGGAGAACGGTGGGCAACACAATGAGAAATGGACTGTGATTCAGAGGAGAATCGACGGCAATGTGAGTTTCTACCGGCCATGGGAGCAGTATAAGAACGGATTTGGTGACGCCAAGGGTGAATACTGGCTAGGTCTGGAGAACATCTTCCTGATGACCTACAGGGAGAAGTATCAGCTGAGAGTGGACATGGAGGATTTTGAGAAAGGCAGCGCCTACGCCCAGTACACTTTGTTCTACATCGACCCAGAGTCCAGCAATTACAGGCTGAATATCGGTGGCTACATCAATGGAGGAGCAGGAGATTCTTTGTCCTACGTGAATGGGAGAGACTTTTCAACATTCAACAAAGACTATACAGGATACTGTGCGGAGACGTACAGTGGAGGATTCTGGTACTATGGCTATTGGACGTGCCACCTCGCCAACCCCAATGGCCTGTACAAATATGGGAATGTGGGCTCATCGTACACAGGGATCATGTGGCAGTCCTGGAAAGGTTACAACTACTCTCTGAAGACCATTGTGATGAAGATCAGACGGATGGGTCTGGAAGATCTTGAAAGTCTTTAGGTTTCCAGAATGCTAGAAGAGTAGAATAGAGAggaataaatgtaatatctcTAACTGCTGCTTCAGTAAAATGgcaagaaaattaatcaattaatcctAATCTTCAGTCTTTGGGTTTATCCTGTGGTATATCCCTCCTGTAATATCCTCAACTCTATTGATTCTCAACTCTATTagtttcctttttaaatatgtattttgtttccggtatacatttaaaatattttaaacaatcaaATGTTTGTACTTCTTATAAGCAATGAAATTCCTATATATAGAATGAAATAAACTTTCAGTAGAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911275.2 True 1243 mRNA 0.43 6 17879085 17882173

Neighbor

gene id symbol gene type direction distance location
LOC113524912 LOC108258795,LOC108258794,LOC108258797 coding upstream 10047 17849467 ~ 17869038 (+)
LOC117596141 LOC108258810 coding upstream 65788 17809632 ~ 17813297 (+)
LOC117596140 LOC108258810 coding upstream 73564 17801617 ~ 17805521 (+)
LOC113525123 LOC108258810 coding upstream 84426 17789523 ~ 17794659 (+)
LOC117596145 LOC108258809,LOC108258789,LOC108258806,LOC108412240 coding upstream 98999 17776852 ~ 17780086 (+)
LOC113524900 LOC108258808 coding downstream 7924 17890097 ~ 17893856 (+)
LOC113524915 LOC108258795,LOC108258797 coding downstream 16670 17898843 ~ 17904082 (+)
LOC113524906 NA coding downstream 30216 17912389 ~ 17916263 (+)
LOC113524905 gpr108,LOC108413117 coding downstream 36885 17919058 ~ 17942334 (+)
soul5l LOC108258805,LOC108413119,LOC102292725,LOC102194468,LOC103383259 coding downstream 59372 17941545 ~ 17952178 (+)
G377703 NA non-coding upstream 63979 17814531 ~ 17815106 (+)
LOC117596150 NA non-coding upstream 176342 17701668 ~ 17702743 (+)
G377652 NA non-coding upstream 279151 17595088 ~ 17599934 (+)
G377644 NA non-coding upstream 294042 17574761 ~ 17585043 (+)
G377604 NA non-coding upstream 451229 17415404 ~ 17427856 (+)
G377709 NA non-coding downstream 2865 17885038 ~ 17887303 (+)
G377715 LOC108258746,LOC108413117,LOC107662713,LOC107560581,LOC107758383,LOC105903165 non-coding downstream 56094 17938267 ~ 17942279 (+)
G377723 NA non-coding downstream 75073 17957246 ~ 17957480 (+)
G377727 NA non-coding downstream 85045 17967218 ~ 17968950 (+)
G377738 NA non-coding downstream 125510 18007683 ~ 18008164 (+)
LOC113526395 NA other upstream 309618 17561445 ~ 17569467 (+)
LOC113525655 NA other upstream 703981 17156898 ~ 17175104 (+)
LOC113537672 LOC108258734,LOC108258743 other upstream 771096 17095866 ~ 17107989 (+)
LOC113537676 LOC108258766,LOC108258734,LOC108258743 other upstream 861250 17000483 ~ 17017835 (+)
b3gntl1 b3gntl1 other upstream 1024069 16822550 ~ 16855016 (+)
LOC113524903 NA other downstream 101313 17983486 ~ 18005140 (+)
G377747 NA other downstream 173451 18055624 ~ 18056805 (+)
G377748 LOC108258742 other downstream 180245 18062418 ~ 18068946 (+)
rdh8b LOC108258824,LOC108258753 other downstream 275920 18158093 ~ 18166225 (+)
G378105 LOC108258757 other downstream 400821 18282994 ~ 18287310 (+)

Expression


Co-expression Network