LOC113524900 (LOC108258808)


Basic Information

Item Value
gene id LOC113524900
gene name LOC108258808
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17890097 ~ 17893856 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911276.2
TGCGTTCTCGTGCTCTTCCTGACAAAGTTGTCATCTAAAGACTCCTGGAACTTTGCCAACACGACATGAGATGACATAAAAGTGAAGCAGAGAATGCTGCTGATTTTAAATTTCTCTGTAGCCGGCTAAGACAATAATACAGAAGAAACAATCCTCACAGATATGCTGCTGCTGTTCGTAGCGCTGCCCCTGCTGGTGCACTCGGCTCCGGTCACTACAGACTTCCTGCCACTGGACTGTGAGGACATTTACAATAACGGCTCCATCCACAATGGAGTGTACACCATCTACCCTGCTGGGTCTGCAGGTGGTAAACCTGTGCAGGTGTACTGTGATATGGGCTGTAATGAAGATGAGAGCCACGGGAAGGAAAGATGGACTGTGATTCAGAGGAGATCTGATGGCAGTGTGAATTTCTATAAGCCATGGGTGGAGTACAAGAATGGCTTTGGGAATGCAGACGGAGAATACTGGTTGGgtCTGGAGAACATCTTTCTAATGACCTACAGGGAGAGGTATCAGCTGAGAGTGGACATGGAGGATTTTGACAAGGGCAGCGCCTACGCACAGTACAGCTCTTTCTACATCGACCCAGAGTCCAGCAGTTATGCACTGCACATCAGCGACTTCATCAACGGAGGAGCAGGAGATCCTCTGAGCAGCCTGAATGGCAAACCTTTTGCAACTTCTGACCAAAATCCATATGGCAGCTGTGCAGACAGTTACTTGGGAGGGTTTTGGTACACCTGCTGGTGGAGTAATGGCGTGGCCAACCCCAATGGCCTGTACAAATGGGAGAACGTGGCTACAACGTACTTAAGTGACGGGATCCTGTGGACCAGCTGGAGATATTACTACTCTATGAAGACCATGGTGATGAAGATCCGACGGTGACTGTAgatgacattaaataaatgtagcatGTCATTGATACCAAACTAAACAAAGGGcaaatgtatgtttttgttctgcATATTTCTGTGACGTATTACTCTGAATAACCTCTATGAATTATTGTTTTAGTTTATCATGGTTTGTTTTAATtggttcctctctctctctctctctctctctcttccttcatcAAGACATCAAAGTCTAGTTAAAATCATGATTTATGAAATTACAGATTTTGGTCCCACAGACTTTAGAAAAAGCAGTCTGGGGTTTATAAAACAGTTCACATCTCAAAATCAATCCAAACATATTAGGACCACAAGGAAGACTATGTTCATGCCTGGTCCTGTTATTTTTCAGAGTGCAGTGGGTCAGGgctacatgatgtaaaaaaaagaaaaataataataaaaatctgttcAGTGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911276.2 True 1325 mRNA 0.44 6 17890097 17893856

Neighbor

gene id symbol gene type direction distance location
LOC113524898 LOC108258795,LOC108258794,LOC108258797 coding upstream 7924 17879085 ~ 17882173 (+)
LOC113524912 LOC108258795,LOC108258794,LOC108258797 coding upstream 21059 17849467 ~ 17869038 (+)
LOC117596141 LOC108258810 coding upstream 76800 17809632 ~ 17813297 (+)
LOC117596140 LOC108258810 coding upstream 84576 17801617 ~ 17805521 (+)
LOC113525123 LOC108258810 coding upstream 95438 17789523 ~ 17794659 (+)
LOC113524915 LOC108258795,LOC108258797 coding downstream 4987 17898843 ~ 17904082 (+)
LOC113524906 NA coding downstream 18533 17912389 ~ 17916263 (+)
LOC113524905 gpr108,LOC108413117 coding downstream 25202 17919058 ~ 17942334 (+)
soul5l LOC108258805,LOC108413119,LOC102292725,LOC102194468,LOC103383259 coding downstream 47689 17941545 ~ 17952178 (+)
trnak-uuu_20 NA coding downstream 225809 18119665 ~ 18119737 (+)
G377709 NA non-coding upstream 2794 17885038 ~ 17887303 (+)
G377703 NA non-coding upstream 74991 17814531 ~ 17815106 (+)
LOC117596150 NA non-coding upstream 187354 17701668 ~ 17702743 (+)
G377652 NA non-coding upstream 290163 17595088 ~ 17599934 (+)
G377644 NA non-coding upstream 305054 17574761 ~ 17585043 (+)
G377715 LOC108258746,LOC108413117,LOC107662713,LOC107560581,LOC107758383,LOC105903165 non-coding downstream 44411 17938267 ~ 17942279 (+)
G377723 NA non-coding downstream 63390 17957246 ~ 17957480 (+)
G377727 NA non-coding downstream 73362 17967218 ~ 17968950 (+)
G377738 NA non-coding downstream 113827 18007683 ~ 18008164 (+)
G377739 NA non-coding downstream 115091 18008947 ~ 18009156 (+)
LOC113526395 NA other upstream 320630 17561445 ~ 17569467 (+)
LOC113525655 NA other upstream 714993 17156898 ~ 17175104 (+)
LOC113537672 LOC108258734,LOC108258743 other upstream 782108 17095866 ~ 17107989 (+)
LOC113537676 LOC108258766,LOC108258734,LOC108258743 other upstream 872262 17000483 ~ 17017835 (+)
b3gntl1 b3gntl1 other upstream 1035081 16822550 ~ 16855016 (+)
LOC113524903 NA other downstream 89630 17983486 ~ 18005140 (+)
G377747 NA other downstream 161768 18055624 ~ 18056805 (+)
G377748 LOC108258742 other downstream 168562 18062418 ~ 18068946 (+)
rdh8b LOC108258824,LOC108258753 other downstream 264237 18158093 ~ 18166225 (+)
G378105 LOC108258757 other downstream 389138 18282994 ~ 18287310 (+)

Expression


Co-expression Network