LOC113524906


Basic Information

Item Value
gene id LOC113524906
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17912389 ~ 17916263 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026911284.2
TCCGTCGAGTACTGGTGTTTTTGTCTGCCGATGTTTCCGGACAGAATCTGCTCTCAAGGTGATATTGATATGGATATTGAAtggatgtatttttatttatcaagcaCAGAGGTGGGAGGATATAAAAGGTGAAACACAGAGGTGAACTTCCTCAGTCTGTTATTTACCTGGTGACAACGTTTAGCACAGATGTATATGTTATTGTCTCTAACGCTTCCCCTGCTGGTGCTGTCCCATCCTATTAACCAGAGTTTCCTGCCGCTGGACTGTCAGGACATTTTCAATAATGGTTCCGTCCACAGCGGAGTTTACAACATCTACCCTGGAGGATCCAAGAGCCCATTGCAGGTGTACTGTGATATGGGCTGTGCTGAAAATAACAGCCACCAGGAAGAGAAATGGACGGTCattcagaggagaatggatgGCACTGTGAATTTCTACCGGCCATGGGATGCGTACAAACATGGCTTTGGAGACAGAAATGGCGAATATTGGCTAGGTCTTGAGAACATATTTCAAATCACATGGAGAGAGAAGCATGAGCTGAGGGTGGACCTTGAAGATTTTGAGCAAGGAAAAGTCTACTGCAGATACTCTTCGTTCTACATCGATTCTGAGTTGGAGAATTACAAGCTACACATCAGTGGATACATCGATGGAGGTGCagGAGACTCTTTGACATATCACAACGGGAAACAGTTTGCAACTTTCGACAAAGACATCAACAACTGTGCAAAGACATATGAAGGAGGATTTTGGTTTGACGGCTGCCACCATACCAACCCCAATGGTGTGTACAAATGGGGACGTGGGGTAGCTGCGTATACAGGTGTTCACTGGCACCACTGGAAAGGTGACTACTACTCACTAAAGTCTATAGTGATGAAGATGAGACGTGTGTTTTTACCAGAAACTAAACAATAACTCCAGCAGCTTGAGCTGAGATTCACGATTCTGAATGTATTCTTCAGCTATATGTATACACAATCAAAACCTAGTTATAGAAAATGTCTGGTTTAAGATTGTAGATGAGATGATTGTACACCACAAAGCACGAAAAG

Function

GO:

id name namespace
GO:0045095 keratin filament cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026911284.2 True 1064 mRNA 0.43 5 17912389 17916263

Neighbor

gene id symbol gene type direction distance location
LOC113524915 LOC108258795,LOC108258797 coding upstream 8307 17898843 ~ 17904082 (+)
LOC113524900 LOC108258808 coding upstream 18533 17890097 ~ 17893856 (+)
LOC113524898 LOC108258795,LOC108258794,LOC108258797 coding upstream 30216 17879085 ~ 17882173 (+)
LOC113524912 LOC108258795,LOC108258794,LOC108258797 coding upstream 43351 17849467 ~ 17869038 (+)
LOC117596141 LOC108258810 coding upstream 99092 17809632 ~ 17813297 (+)
LOC113524905 gpr108,LOC108413117 coding downstream 2795 17919058 ~ 17942334 (+)
soul5l LOC108258805,LOC108413119,LOC102292725,LOC102194468,LOC103383259 coding downstream 25282 17941545 ~ 17952178 (+)
trnak-uuu_20 NA coding downstream 203402 18119665 ~ 18119737 (+)
LOC113524897 LOC108258756 coding downstream 256367 18172630 ~ 18175771 (+)
parn parn,LOC108258427 coding downstream 377495 18293758 ~ 18309052 (+)
G377709 NA non-coding upstream 25086 17885038 ~ 17887303 (+)
G377703 NA non-coding upstream 97283 17814531 ~ 17815106 (+)
LOC117596150 NA non-coding upstream 209646 17701668 ~ 17702743 (+)
G377652 NA non-coding upstream 312455 17595088 ~ 17599934 (+)
G377644 NA non-coding upstream 327346 17574761 ~ 17585043 (+)
G377715 LOC108258746,LOC108413117,LOC107662713,LOC107560581,LOC107758383,LOC105903165 non-coding downstream 22004 17938267 ~ 17942279 (+)
G377723 NA non-coding downstream 40983 17957246 ~ 17957480 (+)
G377727 NA non-coding downstream 50955 17967218 ~ 17968950 (+)
G377738 NA non-coding downstream 91420 18007683 ~ 18008164 (+)
G377739 NA non-coding downstream 92684 18008947 ~ 18009156 (+)
LOC113526395 NA other upstream 342922 17561445 ~ 17569467 (+)
LOC113525655 NA other upstream 737285 17156898 ~ 17175104 (+)
LOC113537672 LOC108258734,LOC108258743 other upstream 804400 17095866 ~ 17107989 (+)
LOC113537676 LOC108258766,LOC108258734,LOC108258743 other upstream 894554 17000483 ~ 17017835 (+)
b3gntl1 b3gntl1 other upstream 1057373 16822550 ~ 16855016 (+)
LOC113524903 NA other downstream 67223 17983486 ~ 18005140 (+)
G377747 NA other downstream 139361 18055624 ~ 18056805 (+)
G377748 LOC108258742 other downstream 146155 18062418 ~ 18068946 (+)
rdh8b LOC108258824,LOC108258753 other downstream 241830 18158093 ~ 18166225 (+)
G378105 LOC108258757 other downstream 366731 18282994 ~ 18287310 (+)

Expression


Co-expression Network