LOC113525638 (zgc:92827,LOC108258818,LOC107665919,LOC107758210,LOC107573835,LOC107668524,LOC107758399,LOC107573875)


Basic Information

Item Value
gene id LOC113525638
gene name zgc:92827,LOC108258818,LOC107665919,LOC107758210,LOC107573835,LOC107668524,LOC107758399,LOC107573875
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 19200027 ~ 19224919 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912201.2
tacacgtGTTTGCTGAAGTTAACACAAGAAATTTCAAGGCATAACATGCTGAAATGCACTTTCATGTGTTCCTCACCTGTAAGAACACATTACCGACTTGTTCACAGTAGCGTGCTGCAGGAGGGAAATCATCGCGCGCTGGTACAGAGAGCGCTATGGACGGTGCGCGCGGGCTGCCAGGGGTTCCGTGACATGCTCGCGAGCGCGGTGTGGAGGATGCCGCTGCTGGGCTTGAGCGTGCTGACGGCGCTGCTCTGTCTGCGGGAGGttggtgctCTGCAGATTCAGTGTTATCAGTGTGAGGAGATTCGGCAGGATGATTGCTCATCTCCAGAGTTCATCGTTAACTGCACTGTTAATGTGCAGGACATGTGCCAGAAGGAAGTACTCATCATGGAGGACGgtgTACACTACAGGAAGTCATGTGCGTCGTCTGGGGCGTGTCTGATTGCATCATCAGGGTATCAGCAGTTCTGTACAGGGAAGCTCAACTCCGTCTGCATCACCTGCTGTAACACACCGCTGTGTAACGGCCCACGCCACAGACGCCGCCCACCCGGCTCACCTGCCCCACCCCCCCTATTGCCCCTCTCACTACTGCTCAGCTCCGCCCTCCTCTCACtgcctctctccctgtctgtctgtccatctgtctgtctctctcactgatgcTACAGCTCTGTACGCTCACTATATCACTTATACATAAACCATCAAAACTGTCTCACTTTCATTGTCTCCCTCTCTGTTACCCTCTCTGTTACCCTCTCTGTTACCCTCTCTGTCTT

Function

symbol description
zgc:92827 Is expressed in basal plate midbrain region; nervous system; and pectoral fin.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912201.2 True 788 mRNA 0.54 5 19200027 19224919

Neighbor

gene id symbol gene type direction distance location
LOC113525760 zgc:76872,zbtb45,LOC108258745,LOC107573833,LOC107572598,LOC107758398 coding upstream 60778 19125834 ~ 19139249 (+)
LOC113524847 LOC108258823 coding upstream 94348 19034511 ~ 19105679 (+)
sp6 LOC108258788,LOC108418435,LOC108418467 coding upstream 525426 18664087 ~ 18674601 (+)
LOC117596189 NA coding upstream 672431 18523161 ~ 18527596 (+)
LOC113524839 NA coding upstream 695287 18498988 ~ 18504740 (+)
LOC117596155 LOC108258581 coding downstream 42564 19267483 ~ 19283319 (+)
G378387 NA non-coding upstream 29978 19169842 ~ 19170049 (+)
G378380 NA non-coding upstream 102414 19097408 ~ 19097613 (+)
G378369 NA non-coding upstream 194411 19005384 ~ 19005616 (+)
G378367 NA non-coding upstream 195982 19003744 ~ 19004045 (+)
G378361 NA non-coding upstream 226838 18972978 ~ 18973189 (+)
LOC113525637 LOC108258744,LOC108413824 other upstream 31416 19142681 ~ 19168611 (+)
G378376 NA other upstream 57890 19139805 ~ 19142137 (+)
LOC113529661 LOC108258823 other upstream 178104 18946082 ~ 19021923 (+)
G378354 LOC108258755 other upstream 257699 18937500 ~ 18942328 (+)
LOC113525834 LOC108258740,LOC108412431 other upstream 377971 18781038 ~ 18822056 (+)

Expression


Co-expression Network