LOC113526760 (LOC108258765)


Basic Information

Item Value
gene id LOC113526760
gene name LOC108258765
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17307615 ~ 17320360 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914084.2
ATCAGGAAGTCTTCAGAGTTTTCACTTTCACAAGAGCTCTTCTGATATGCTCATAACTTAAGATCTCTCCATCTGCCTTGGATTTCAGTGTCTCCTTCATGGCATCCTCTCTAGAAGATGATCTCTCGTGCCCAGTGTGTTGTGAGCTTTATCAGGATCCTCTGCTCCTCTGCTGTGGACACACTTTCTGCCGCCAATGTCTCAGAAAACACTGGAATGTAAACACCAGTCGGACATGTCCCGTGTGTCGCACGGTGTCTCTGCAGGAACCCGTGGCCAACCTGGCTCTGAGGAACACCTGCGAGTCCTATCggagggagaaagaaagggagaggaaggagagagagagtgacggTGAAGTCAAATGTGCTCAACATGGAGAGAAAGTCCAGTTCTTCTGTAAAACTGATGATGAGGTCATATGTTCGAAGTGCAGGAAAGAAAGTCACAGACTGCACAGAGTTCAGCTTCTCACACATGCTGCACGACAACGCAAgGACCGAATTAAAGCTGCACTCCGTCCAGCTGAAAAAGCTCTGCAGTCTCTAAAGAATGGCACCAGTCAAAAAGCTCAAATTGCCAAGTACATTCAGtctcaggCCCAGCAGGCAGAGAagcagataaaaacagaatttgagAAGTTTCACCATTTCCTCAGGAAAGAGGAGGAGGCCAGAATGACAGCACTGAAGAAAGAAGTGGcaagaaagagagggaaggTGGAGGAAAggatagaaagagagatatTGCTTCTTTCTGACAGAGTGAGGGAGGTGGAAGAAGAAATGGAGACTGAAGATGCCACATTTATGCAGAATTATAACTTTGTACTGCAGAgAGCTCAATGCACAATGTTGGATTCAGAGTTACATTCAGAAAATCTCATCAACATGGCTGAACATGTGGGGAATCTGGGATACCGAGTGTGGGAGAAGATGACGGACATCTTCCTTTACTACCCGGTCCTCCTAGATCTAAACAGCGCTCCTGAGGACTTTTTCATATCAGATGACCTGGCAAGTGTAGGAAAGTCATCCTACATCCGGCCGAACCCTATTCCATTTCATGGGAACCGCTTGGTGCTGGGATCTGAGGGATACAGTGATGGCTTCCACTGCTGGAACGTCGAGGTGGGAGACAGTAAGCACTGGACTCTCGGCGTGTGTCAACGCTCGGCCGGCATGAATTTGGTACAACCTTTGACAGCTGAAAGGGGCTTCTGGGGTCTCAGCAGAAACAGGGAATCCTACATGCTTCTGACATCCTGCAAATACTCGTTCAGGATACGCAAGAAGCCAAGAACAGTGCAGGTGCAACTGGGATGGTGGTATACCATAGGCAACCTGAACATAAGTCGGATGGTGAGATTTGTGGATGTCAGCGATGGATCTGTGATTGCATGTTATACTGGAATTCCCAATGGGGTGCTGTTGTTTCCATTCCTGATCCCAGAAGAGCGTTTTTCTTATCTGCGCATTGCTCCTGCTAATCCAGCCCTGGTCATACAGCGCACATttgtagagagagaaaaaagtcagaTGCCTGTTTACCTAATATATTTGTCCCTAGTGGGTTTGATcatttttatgttattgtttggagggagtgagtgaggtgagtgagtgagcaaaTGAGTGAGCAAATGAGTGAGCAAGTGAGCaggtaagtgagtgagtgagtaa
>XM_026914085.2
ATCAGGAAGTCTTCAGAGTTTTCACTTTCACAAGAGCTCTTCTGATATGCTCATAACTTAAGATCTCTCCATCTGCCTTGGATTTCAGTGTCTCCTTCATGGCATCCTCTCTAGAAGATGATCTCTCGTGCCCAGTGTGTTGTGAGCTTTATCAGGATCCTCTGCTCCTCTGCTGTGGACACACTTTCTGCCGCCAATGTCTCAGAAAACACTGGAATGTAAACACCAGTCGGACATGTCCCGTGTGTCGCACGGTGTCTCTGCAGGAACCCGTGGCCAACCTGGCTCTGAGGAACACCTGCGAGTCCTATCggagggagaaagaaagggagaggaaggagagagagagtgacggTGAAGTCAAATGTGCTCAACATGGAGAGAAAGTCCAGTTCTTCTGTAAAACTGATGATGAGGTCATATGTTCGAAGTGCAGGAAAGAAAGTCACAGACTGCACAGAGTTCAGCTTCTCACACATGCTGCACGACAACGCAAgGACCGAATTAAAGCTGCACTCCGTCCAGCTGAAAAAGCTCTGCAGTCTCTAAAGAATGGCACCAGTCAAAAAGCTCAAATTGCCAAGTACATTCAGtctcaggCCCAGCAGGCAGAGAagcagataaaaacagaatttgagAAGTTTCACCATTTCCTCAGGAAAGAGGAGGAGGCCAGAATGACAGCACTGAAGAAAGAAGTGGcaagaaagagagggaaggTGGAGGAAAggatagaaagagagatatTGCTTCTTTCTGACAGAGTGAGGGAGGTGGAAGAAGAAATGGAGACTGAAGATGCCACATTTATGCAGAATTATAACTTTGTACTGCAGAgAGCTCAATGCACAATGTTGGATTCAGAGTTACATTCAGAAAATCTCATCAACATGGCTGAACATGTGGGGAATCTGGGATACCGAGTGTGGGAGAAGATGACGGACATCTTCCTTTACTACCCGGTCCTCCTAGATCTAAACAGCGCTCCTGAGGACTTTTTCATATCAGATGACCTGGCAAGTGTAGGAAAGTCATCCTACATCCGGCCGAACCCTATTCCATTTCATGGGAACCGCTTGGTGCTGGGATCTGAGGGATACAGTGATGGCTTCCACTGCTGGAACGTCGAGGTGGGAGACAGTAAGCACTGGACTCTCGGCGTGTGTCAACGCTCGGCCGGCATGAATTTGGTACAACCTTTGACAGCTGAAAGGGGCTTCTGGGGTCTCAGCAGAAACAGGGAATCCTACATGCTTCTGACATCCTGCAAATACTCGTTCAGGATACGCAAGAAGCCAAGAACAGTGCAGGTGCAACTGGGATGGTGGTATACCATAGGCAACCTGAACATAAGTCGGATGAAGATCCGTTCTAATCCAAAACCCAGCAGCAGAATCACACAGACAACCACAGAGATGATGATAGAGGAATCTGGAGACAAGATCAGAAgagtgaagagatgatgatgaggctcTGGCCAAATTATGCAAGTGAATTTTatctcaggtgatgagacaaagactgatgtggatgatgaagATAATCAAAGATTATCATAAACTTaacattctttacatttttgtggGGTGCTTGAGCTTTTGGAAAGATTGTAGTTATGGTTGCCATGGTTATGGTTGCCAGTAGCCACACTGCAAAGTTGGTCATTTGTCCACAGGGAAGACTTAGggatacttttttgttttggttggaAGGCCATGCAGACCAAACCACAGGAGCTACAGcaaccatagcaaccacctagcaacatcCTAGTAATCAACTGGGTTggcatagcaaccacctggaataccatagcaaccacctagcaacaccctagcaaacAACTGGAATATCATagcaatattttaatgttctAATGCTTTCATCTTTGAACATGTTTTAACACTGTACCCTTTAAACATGTTTCAGTGTATTTAAACTTTTCAACATTTCAAAATCAGTGACAGCAAAACACTGTAatgtaattagatttttttttagcatgtttaatccatttacaaggttaaatggattaaacatgctaaaaaaaaaatcaaatcatctGTCTCAAACCCAAGCCTTGAACTCCTTAGCAATAAGGAACCAACAAGTTGTGCAGGTGTCTCCATGACTAGACCTGAATTCCTTTTCCACAAAGAGAACAGACCACAGATGTGTGTATTGTAAAGTCTTACCAAGCTGAAGTGCGTCTGACGTATCCTGGATTCTCTGTTGTGTCACTTGTTACTTCTGTTTACATGCACCATAATGTAATACCATTTTCATATATTAAtggaacaaagaaaaacacaaataagtaataatattGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914084.2 False 1682 mRNA 0.47 6 17307615 17313638
XM_026914085.2 True 2330 mRNA 0.44 7 17307615 17320360

Neighbor

gene id symbol gene type direction distance location
LOC113526801 LOC108258761 coding upstream 1345 17300942 ~ 17306270 (+)
LOC113526590 LOC108258777 coding upstream 45391 17255077 ~ 17262224 (+)
LOC117596139 LOC108261577 coding upstream 53494 17235595 ~ 17254121 (+)
LOC117596142 LOC108261577 coding upstream 58282 17244768 ~ 17249333 (+)
LOC113525656 NA coding upstream 83449 17222700 ~ 17224166 (+)
LOC113526630 LOC108258768 coding downstream 28593 17348953 ~ 17350873 (+)
LOC113526484 NA coding downstream 32599 17352959 ~ 17359864 (+)
LOC113526628 NA coding downstream 110853 17431213 ~ 17441342 (+)
LOC113526593 LOC108258729,LOC107668682 coding downstream 131232 17451592 ~ 17494811 (+)
LOC113526467 NA coding downstream 193225 17513585 ~ 17525427 (+)
G377529 LOC108258812,LOC108258801,LOC108258790,LOC108258798,LOC108258792 non-coding upstream 104997 17182776 ~ 17202618 (+)
G377499 NA non-coding upstream 198945 17108459 ~ 17108670 (+)
G377456 NA non-coding upstream 225204 17053358 ~ 17082411 (+)
G377452 LOC108258734,LOC108258759,LOC108258743,LOC108258770,LOC108258767 non-coding upstream 240183 17034906 ~ 17067432 (+)
G377447 NA non-coding upstream 257346 17009446 ~ 17050269 (+)
G377604 NA non-coding downstream 95044 17415404 ~ 17427856 (+)
G377644 NA non-coding downstream 254401 17574761 ~ 17585043 (+)
G377652 NA non-coding downstream 274728 17595088 ~ 17599934 (+)
LOC117596150 NA non-coding downstream 381308 17701668 ~ 17702743 (+)
G377703 NA non-coding downstream 494171 17814531 ~ 17815106 (+)
LOC113525655 NA other upstream 132511 17156898 ~ 17175104 (+)
LOC113537672 LOC108258734,LOC108258743 other upstream 199626 17095866 ~ 17107989 (+)
LOC113537676 LOC108258766,LOC108258734,LOC108258743 other upstream 289780 17000483 ~ 17017835 (+)
b3gntl1 b3gntl1 other upstream 452599 16822550 ~ 16855016 (+)
G377269 NA other upstream 743099 16561383 ~ 16564516 (+)
LOC113526395 NA other downstream 241085 17561445 ~ 17569467 (+)
LOC113524903 NA other downstream 663126 17983486 ~ 18005140 (+)
G377747 NA other downstream 735264 18055624 ~ 18056805 (+)
G377748 LOC108258742 other downstream 742058 18062418 ~ 18068946 (+)
rdh8b LOC108258824,LOC108258753 other downstream 837733 18158093 ~ 18166225 (+)

Expression


Co-expression Network