LOC113526801 (LOC108258761)


Basic Information

Item Value
gene id LOC113526801
gene name LOC108258761
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 17300942 ~ 17306270 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914152.2
cacacacactctccatgGCGTTCTCTCTAGAAGAAGATCTCTCCCGTCCAGTGAGTTTAGAGCTTCATCAGGATCCTCAGCTCCTCTTCTGTGGACACTGTGGAGTTGTTGGATATCACCACGCTGTTTTCTGCTCGTTTTGCTCTCCAACATGTCCTGTGTGTCACCAGGAATCCCTGACCAGCCTGGCTCTGAGGAACACCTGTGAGTCCTATCAGAGGgagaaggagatggagagagaagacAGGGAGGAAGACGGAGGGATTCGATGTCCATTGCACAGAGAGAAAATCCTGTTTTTCTGCAAGAACGATGAAGAGGCCATATGTTCTCAGTGCAGAAAACAGAGTCACATATCACACAGAGTTCAgccttttacacacactgtatacgaGCGAAAGGACCAAATCAAAGCAGCTGTCCGTCCAGCCGAGAAAGTTCTGGAGTCTTTAAGGAACGGCACAGCACTGGAGCGTAAAATCACCAAATACATTGAGtCTCAGGCTGAGCAGACGGAGAAGCAGATAAAGGAGGAGTTTGAGAAGCTTCATCAGTTCCtcagagaggaggaagaggtcAGGAGAGCTGCActgagggaggaagaggaggagaagaaagaaaaactggaAAGATGGATTGAACAAGAGTTACAGTCCCTCTCGGATAGATTGATGGAGGTGGAAGAAGAGCTGGAGAATGATGATGTCACATTCCTGTCgaacTTTGACCATATTATGACACGGGCTCGGTACAGACGGTCAGATCCACAGCTGAACTCAGGATCTCTGATCGATGTGGCCAAACACGTGGGAAATCTGAGATTCAGAGTGTGGGAGAAGATGAAAGATCTTTGTCCTTACTACCCGGTAGTCCTCAACCCGAACTCCTCCCACATGTCTGTGTCTGGTgatctggtgtgtgtgagacactccGTTCGCAGATTTTACTCCCCCAACCCCCTACAGAAGAATGCTAACCATTTGGTTCTTGGTTCGGAGGCCCAAAATGCCAGCTTCAACTGCTGGGATGTGGAGGTGGGAGACAGCAAGCACTGGACCCTGGGTGTGTGTCGACGCTCGGCGGCCGAGAGAAACCTCACACAACCTTTGATCTCTCAAAATAGGTTTTGGGGTCTCAGCAGAAATGGAGATTTCTATGATGTCTTGTGGTCCACAGAGGCTCCGTTTCGGTTAAGGAGGCCTCCGAAAACGGTGCGGGTGAAGTTGATACAACGTTTCGATCTCAACAACTGGAAACTTTACTGGATGCTGAGATTTTTAGATGCTAGCAATGAATCTGTGATCGCCTGTATTCGTGATATAGCATTTGGGAGGGATTTCATTCCCTTTTTGATCCCAGAGGAGAGAAATGCTCCTCTGCGCATTGttcctgtaaatgtaaacatgacCATGGAGAAGAAATTCAGCTTCTTAGAGAGGCACATGGACATGATACCTTTATATGTAATTGGATTCCTCATGGTGCTTTTGGTGTGTTTGGTGATGATATTGGTAAAAATACACTAGGAAAGTGAAAATCAGAGAGTTGTTTGGGTTGCATTTCAAGAAGCACCTTATAAGAATATATTGAAATAATCAAGTTAACAAGAATAGCATGCTTCTAGATCCATATGATAAAAAGCAGGAGCTTAGTACAGATAGATAAAAGTGCAGAAAGTTCAACAAGTGTAAGACAGATCAGCCACAGTTTAGTTATAAGTAAGCATAACAGAACCAGAGAATGTGGGTAATGATGAGAGAGTAATTTTGTATAATGGTGCCGATCACAGGAAATTGCATGAGAGTAAAGCACTTAAATTTCATAACCGAATTCTGTTTTCTGAAAAATCATGctggaaataatgaaataatgtggtgtaataaaactgttgattttaaaatatgaaa
>XM_026914153.2
CTCTCTTCCTCAATCCAATGTTTACACACAGCTACTTTCGTTTTTAGGGAAAGAAAActcaacactttttatttccttttccagCTTTACTTTGTTTAACTCTCACATCTTGAAGTTCCTCTGAGAGAATCCCTGACCAGCCTGGCTCTGAGGAACACCTGTGAGTCCTATCAGAGGgagaaggagatggagagagaagacAGGGAGGAAGACGGAGGGATTCGATGTCCATTGCACAGAGAGAAAATCCTGTTTTTCTGCAAGAACGATGAAGAGGCCATATGTTCTCAGTGCAGAAAACAGAGTCACATATCACACAGAGTTCAgccttttacacacactgtatacgaGCGAAAGGACCAAATCAAAGCAGCTGTCCGTCCAGCCGAGAAAGTTCTGGAGTCTTTAAGGAACGGCACAGCACTGGAGCGTAAAATCACCAAATACATTGAGtCTCAGGCTGAGCAGACGGAGAAGCAGATAAAGGAGGAGTTTGAGAAGCTTCATCAGTTCCtcagagaggaggaagaggtcAGGAGAGCTGCActgagggaggaagaggaggagaagaaagaaaaactggaAAGATGGATTGAACAAGAGTTACAGTCCCTCTCGGATAGATTGATGGAGGTGGAAGAAGAGCTGGAGAATGATGATGTCACATTCCTGTCgaacTTTGACCATATTATGACACGGGCTCGGTACAGACGGTCAGATCCACAGCTGAACTCAGGATCTCTGATCGATGTGGCCAAACACGTGGGAAATCTGAGATTCAGAGTGTGGGAGAAGATGAAAGATCTTTGTCCTTACTACCCGGTAGTCCTCAACCCGAACTCCTCCCACATGTCTGTGTCTGGTgatctggtgtgtgtgagacactccGTTCGCAGATTTTACTCCCCCAACCCCCTACAGAAGAATGCTAACCATTTGGTTCTTGGTTCGGAGGCCCAAAATGCCAGCTTCAACTGCTGGGATGTGGAGGTGGGAGACAGCAAGCACTGGACCCTGGGTGTGTGTCGACGCTCGGCGGCCGAGAGAAACCTCACACAACCTTTGATCTCTCAAAATAGGTTTTGGGGTCTCAGCAGAAATGGAGATTTCTATGATGTCTTGTGGTCCACAGAGGCTCCGTTTCGGTTAAGGAGGCCTCCGAAAACGGTGCGGGTGAAGTTGATACAACGTTTCGATCTCAACAACTGGAAACTTTACTGGATGCTGAGATTTTTAGATGCTAGCAATGAATCTGTGATCGCCTGTATTCGTGATATAGCATTTGGGAGGGATTTCATTCCCTTTTTGATCCCAGAGGAGAGAAATGCTCCTCTGCGCATTGttcctgtaaatgtaaacatgacCATGGAGAAGAAATTCAGCTTCTTAGAGAGGCACATGGACATGATACCTTTATATGTAATTGGATTCCTCATGGTGCTTTTGGTGTGTTTGGTGATGATATTGGTAAAAATACACTAGGAAAGTGAAAATCAGAGAGTTGTTTGGGTTGCATTTCAAGAAGCACCTTATAAGAATATATTGAAATAATCAAGTTAACAAGAATAGCATGCTTCTAGATCCATATGATAAAAAGCAGGAGCTTAGTACAGATAGATAAAAGTGCAGAAAGTTCAACAAGTGTAAGACAGATCAGCCACAGTTTAGTTATAAGTAAGCATAACAGAACCAGAGAATGTGGGTAATGATGAGAGAGTAATTTTGTATAATGGTGCCGATCACAGGAAATTGCATGAGAGTAAAGCACTTAAATTTCATAACCGAATTCTGTTTTCTGAAAAATCATGctggaaataatgaaataatgtggtgtaataaaactgttgattttaaaatatgaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914152.2 True 1907 mRNA 0.45 6 17301154 17306270
XM_026914153.2 False 1863 mRNA 0.43 7 17300942 17306270

Neighbor

gene id symbol gene type direction distance location
LOC113526590 LOC108258777 coding upstream 38718 17255077 ~ 17262224 (+)
LOC117596139 LOC108261577 coding upstream 46821 17235595 ~ 17254121 (+)
LOC117596142 LOC108261577 coding upstream 51609 17244768 ~ 17249333 (+)
LOC113525656 NA coding upstream 76776 17222700 ~ 17224166 (+)
LOC117596117 NA coding upstream 128796 17167068 ~ 17172146 (+)
LOC113526760 LOC108258765 coding downstream 1345 17307615 ~ 17320360 (+)
LOC113526630 LOC108258768 coding downstream 42683 17348953 ~ 17350873 (+)
LOC113526484 NA coding downstream 46689 17352959 ~ 17359864 (+)
LOC113526628 NA coding downstream 124943 17431213 ~ 17441342 (+)
LOC113526593 LOC108258729,LOC107668682 coding downstream 145322 17451592 ~ 17494811 (+)
G377529 LOC108258812,LOC108258801,LOC108258790,LOC108258798,LOC108258792 non-coding upstream 98324 17182776 ~ 17202618 (+)
G377499 NA non-coding upstream 192272 17108459 ~ 17108670 (+)
G377456 NA non-coding upstream 218531 17053358 ~ 17082411 (+)
G377452 LOC108258734,LOC108258759,LOC108258743,LOC108258770,LOC108258767 non-coding upstream 233510 17034906 ~ 17067432 (+)
G377447 NA non-coding upstream 250673 17009446 ~ 17050269 (+)
G377569 NA non-coding downstream 10290 17316560 ~ 17316971 (+)
G377604 NA non-coding downstream 109134 17415404 ~ 17427856 (+)
G377644 NA non-coding downstream 268491 17574761 ~ 17585043 (+)
G377652 NA non-coding downstream 288818 17595088 ~ 17599934 (+)
LOC117596150 NA non-coding downstream 395398 17701668 ~ 17702743 (+)
LOC113525655 NA other upstream 125838 17156898 ~ 17175104 (+)
LOC113537672 LOC108258734,LOC108258743 other upstream 192953 17095866 ~ 17107989 (+)
LOC113537676 LOC108258766,LOC108258734,LOC108258743 other upstream 283107 17000483 ~ 17017835 (+)
b3gntl1 b3gntl1 other upstream 445926 16822550 ~ 16855016 (+)
G377269 NA other upstream 736426 16561383 ~ 16564516 (+)
LOC113526395 NA other downstream 255175 17561445 ~ 17569467 (+)
LOC113524903 NA other downstream 677216 17983486 ~ 18005140 (+)
G377747 NA other downstream 749354 18055624 ~ 18056805 (+)
G377748 LOC108258742 other downstream 756148 18062418 ~ 18068946 (+)
rdh8b LOC108258824,LOC108258753 other downstream 851823 18158093 ~ 18166225 (+)

Expression


Co-expression Network