cnpy3 (cnpy3,tnrc5,LOC102798477)


Basic Information

Item Value
gene id cnpy3
gene name cnpy3,tnrc5,LOC102798477
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 4511270 ~ 4517988 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928684.2
TCTGATGTGTTGGACAGGACTACGGCGGAAGTGGATGCTGCAGAAGCAGGGAGTGCTTAGAAGCCGATGACAGCAGTCTTATTTATCTTGtttgtattataaataaatatattaccaCAGAAGACACAGTGTTTGAaatgaatgtgttcatttttatagCATTAGCTTTCATAAGTACACAAGCGGCTCGAAGAAGTGACGACGATGACTGGGTGCATTTACCGAATAAATGTGAAGTATGTAAGTTTTTGAGCATTGAGATGAAATCCGCCTTAGAAGAAACGGGGAAAACGAAAGAAGTGATAGAGACGAACTACCGTTTCTTGGACGATAAAGGAGCACCACCAATCAAATATGTAAAATCTGACATTCGGCTCATAGAGGTAATGGAAAATGTATGTACAAGGATCCTGCAGTATAATttacacaaagagagagatggcaGCAATCGCTTTGCAAAGGGTATGTCTGAGACATTTTCGACCTTGCATAACCTGGTCCATAAAGGAGTGAAGGTTGTCATGGACATTCCTTATGAGCTGTGGAATGAGACAAGTGCTGAAGTATCTGACCTCAAGAAACAGTGTGATGTGATGGTTGAGCAGTATGAAGAGGTCATTGAAGACTGGTATAAAGGCAGCCAGGAAGAAGACCTAATGACATACCTGTGTGAGAAACATGTTCTGAAAGGACAAGACTCATcATGTCTAAAAGAAATGTGGCATGAGAAGAAAGGAGATCCTGCAGCCATCGcacaagacaaaaagaaaaagaaaagcaaaaagaagGCCAAAGGTGGTGAGCATAACCAAAACAAAGAgaagaagggaaagaaaaagaaaagtaagcTTGAACACAGCGACAAGCAGAAAACTGAAGAGGAGGGACATACGTCAGATGAGGAGATACAAAGGAGTGCTCCTCTTCATCAGGAGAGAACTGAACTCTGACCTGTCTAACTTCATTCAGACCTTATTTTTGTCCTAGCGCTACACGTTTGGTGGACATGTGTGGTTTGGCATAAATTGTGTTAAAACTTCTGAAGTGTTGAAGTGTGGTAACACAGTAAAGAATAATATcaaactgcctttttttttttttttttttttgggaagagTGCATAATTTCCGCTGAGTTAAGGTAAGGTACAAGTTTTGGTTGGAGTggaattttttcccctcatttttttcccccaacaggATGCTGTGATGAGCATAAAGAGACTATTAACATGATGATTTGGCCTCCTTAATTACTGAAGTGTTAAATCATGTAAAACTTTGATTCAGTTAATATgactttataaattttattgttGCATAAGAGTCATAaaatgtgaattatttatttttttctttacagtttaCTGCAAACCTCCTttacatttgaaatgttttgtttagtaGAGATGCATAGTTTAGTCATAGTTTAACCCTTATTCTTGTGCTGTGGACTAAAAAGCTTTGAATAATGCAATCACAATTTCAGGTCAGTAATTTTTCTGtattagtgtgtcagtgttatTTTGGATGATTTctaagtacatttttaaagtccATGCTTTGGCTATGAAATGCTGCGACTCCTAAAGATCAGAAATGGTGTGTTGTATtttaggagggaaaaaaacagttacaaatattgcatttttgcaGGCTGTTATTTTACTATATCTTCTGTCTGTGAATAGTATCTTACTGCTAGAGACAGCTTGTGGTTTTGATATGTAATAAACATTGATAATTGGACAATA

Function

symbol description
cnpy3 Predicted to enable signaling receptor binding activity. Predicted to act upstream of or within innate immune response. Predicted to be located in endoplasmic reticulum. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 60. Orthologous to human CNPY3 (canopy FGF signaling regulator 3).

NR:

description
hypothetical protein EH28_16446

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0005783 endoplasmic reticulum cellular_component

KEGG:

id description
K22816 CNPY3_4; protein canopy 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928684.2 True 1753 mRNA 0.37 6 4511270 4517988

Neighbor

gene id symbol gene type direction distance location
LOC113535753 LOC108258306,LOC108439384,LOC106595798 coding downstream 6531 4488149 ~ 4504739 (-)
LOC117596198 NA coding downstream 48056 4463108 ~ 4463214 (-)
LOC117596197 NA coding downstream 49955 4461209 ~ 4461315 (-)
LOC117596196 NA coding downstream 51847 4459317 ~ 4459423 (-)
LOC113535829 NA coding downstream 53729 4457435 ~ 4457541 (-)
LOC117596183 NA coding upstream 6514 4524502 ~ 4524784 (-)
cfap221 cfap221 coding upstream 78442 4596430 ~ 4618808 (-)
knstrn knstrn coding upstream 101213 4619201 ~ 4627241 (-)
brat1 brat1 coding upstream 551372 5069360 ~ 5112747 (-)
LOC113537465 atp1a1a.1,LOC108258575,LOC108429870,LOC107653678,LOC107717912,LOC107718011,LOC107698904,LOC107555257 coding upstream 735705 5253693 ~ 5268198 (-)
G370468 NA non-coding downstream 64164 4446458 ~ 4447106 (-)
G370425 NA non-coding downstream 369142 4141922 ~ 4142128 (-)
G370418 NA non-coding downstream 524648 3986205 ~ 3986622 (-)
G370416 NA non-coding downstream 527691 3983111 ~ 3983579 (-)
G370415 NA non-coding downstream 528330 3981710 ~ 3982940 (-)
G370665 NA non-coding upstream 286892 4804880 ~ 4811748 (-)
G370663 NA non-coding upstream 378239 4896227 ~ 4914035 (-)
G370699 NA non-coding upstream 528052 5046040 ~ 5046246 (-)
G370702 NA non-coding upstream 540865 5058853 ~ 5059054 (-)
G370705 NA non-coding upstream 544156 5062144 ~ 5062436 (-)
LOC117596167 NA other downstream 1658059 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 1936799 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 2678541 1824204 ~ 1832729 (-)
G369586 NA other downstream 2716046 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 2899604 1538453 ~ 1611666 (-)
G370658 NA other upstream 325341 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 870916 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 1012004 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 1424051 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 1497738 6015726 ~ 6033393 (-)

Expression


Co-expression Network