gpc5a (gpc5)


Basic Information

Item Value
gene id gpc5a
gene name gpc5
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 3083070 ~ 3170485 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928711.2
tcctttcttccacCTTTCTCTTCCTGgccttttcttcctctcccGGGTTCGCTTGCGTTTCTGTTTTCTGTCCACTAGGTGCCGCTGTGGCCTTCAGGAAGTTAAACATTGGGAAGGAAGGATTTGACATTTTGCTTGAATTACTCTTGATTTAAGAAGCAGCTGATTAAAGCTCATTACAGCACTGCAGATTATAGAGTGCAGCTCTGAGGGAACTTTCCAGGATCAGTGACGGATGAAAATGTAGCTTCAGGAAAGAGCAGTGTGTTcagaaaagctctggagtgtgtgtgctggagtgttCAGATGGCCCTGAGCTATACTGTCTTGTGTTTGTTTAGATTTCACTGtggactagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatatgagtgtgtgaaatgatGTCAGTGTGAgaaggaggagctggaggaggcgGAGACAATTCCAGGACACCGCCCATGTTGCTTTGACAGCTCcagtaaagctgtgtgtttgtgtgtgtgtgtgtgtgtacgcgtgtGTGTACTGGTTGTTACTGCGCCGTGTGAGACTTAATGCATATCATCTGAGTATTTGCAGCATCACCTGTGAGTGGATCAAGGTTCCCTCCACACCTGGAGTTTCTCTGAACAGAGTCATTACTGCAGCTAGATTGTTGTAGTTAAAATGGACAGCTGGTGGTGgttggtgtgtttgtgctttgcTGCTCTCACTGACAGAACGCAACAAAACACGATGAGCTGCGATAGCGTGCACAATCTTCTGCAGCTGCAGCAGATCGACACAACAACTGGTGTACTGGACACACCTGAGAAAGAATCGGATCTTCAAGTGTGTCTTAGCCGCAGTGTGACCTGCTGCACGAGGAAGGTGGAGGAGCAGTACCAAACAGCAGTGCATCAGGACATCCAGAACCTTTTGCAGACCTTCAGCTACAACCTGAAGCTCCTCATCACACAAAATATTGCTGCCTTACAAGACATGGTGGACTTGGTGGTGCGTGAAGTGCAGAACAACACCTTTTCCCTCTTGAAAGTTTTGTACGGTGACCTCGCCTCACGTGCTTCCTCTCCGCTGGCTGAACTCTTTACTGATGTTGGTCTCTTTGtgctgggggcggagcttaaccTGGAAGAAGCAGCACAACGTTTTTTCCAAGCACTTTTCCCATTGGTGTATGACCAACTTGAGAAGCCAGGCATGGCACGTTTAGATCCCGTCTACCAAGAGTGTTTGCGGTCAGTCGGGCGCCGCACAGCAGCGTATGGTAATGCCCCAAAACGCCTCGCGTTGCTGGTGGCACGTGGCTCGCGGGAAGAACGCATTTTTCTGCAGTCGATGCACCTTGCCGTTGAGGTCATCAACACCACAGACCACGCTCAGCCAAGCCGTGAGTGCCGTCGTGCGTTAATGCGAATGCGCTACTGCCCACTGTGCCAAGCCCTGACAGACAGCAAGCCATGCATGGGCTACTGCCTGAACGTGCTGCGTGGCTGCCTGGCCAGTCTCGCCGAGGTCGACACCCACTGGCAGGAATTTGTACGCTCGCTGGAAGCGCTCGCGGCACGCATGCATGATGGGAACGAGCTCGAGCATGTACTCGCCTCAGTTCCCCCTCTCATCATCGAGGCTGTGGCTTACACAAGCAGGAATGCTGCCCAACTCACCTCACAGGTTCGAGGTGTGTGTGGAGAACCTGTACGCTCTGGTCCTGTCCAGCAGGGAGGTGCTAGTGACGCACTATACCTCCAAACCCCTGAAAGAAGCACAGAGGACACACTGAGTCACAGGAGACGggAATTCCTCAGTTCTTTGCGGCACTATCGGGCATTTTACGGAGGTTTGGCTGATCAGATGTGTGTTCGAGAGCTAGCGTCAACTGACGGCCCCACCTGCTGGAACGGAAATGACGTGGTCAAGAGTTACACAAAGCGAGTGGTGGGCAGTGGGATACGAGCCCAGGGACAAAACCCAGAAGTACGGGTGAAGGACGCTGATCCGGGCATCAACCAGGTGATCGACAAGCTGAAGTATATCAACCAGCTCCTGCAGGGACGTTTTATCCCTAAATTGGGCACTCTGGACCAGATCGAGATGGGCAGCGGCGAGATGGGCATTTCGTTTAGTGGACAATGTGATGATGAGGATGGCTGCTGGGGGTCTGGAGACGGAGCTGGAGAAACTCGGATCATTAAACCAACTGAATTGACTGAAGAGAAGCCTGGTGAAAACCTACACCCtggcccacacacacaggatgctGGATGCACACTTGAGGTTTCCGGCtgcaagaacacacacagtgccttgTGGGTTCTGAGTGCAGTATACACACTGCTAACGTTATGGAGGTAACACCAGAACACACTCCGGCACACTCCTGAACCTGGACGCAGTAAAGACTCTGTACCAAGACACCTTTTCTTCTCtcgcctgttttttttttcttttttcttttctgatgtGGCACATTTTCACTGCCGACTCTGACACTTGCTCCATAACACTACTCCTTTGTGTTAGGGGCCCTCTGGAGTCAACGAGGGTGAAAAAAAGAACCCTGAGATGTTCCTGACATTCCCTTACAGACGGGGGCAGATTTAAACTGTGTAGGTGATGATTAAGGGGGCGGGGCTATGCTCCTGAGGGAGGATGATTGACAGCTGGAGGGCGCATGACTGACCTGCAGCTTCTGACAGAGGTTTAacggagagggaaaaaaaaaaggaaaacggAGGAGGAAATAGAGGGAGAAACATAGAAAGAGAGAATTCTGGAACACAGAGTTAACCTGGTGTAATCTGATTACTGATGACTTTTAATATCTGAATAttcattacttttaaaattaatattcgTAAGAAACTGTCAGCCTAGTCAGCGTGGAggatttaaatttagatttaaatttatgCACACACTTTAGTCTTCACAGACGGACAGTgagacggacagacagatgaataCAGGATGTATTGTactagatagacagatagacagagacagatagacagagacagatagacagagacagatagatagatagacatatgGCCTAACAAACATACAGACAAAATACAGTGTACataagtctacacacccctgttgaaattgcaggtttttgtgaaataaacaaataatgcCAAAATAaatccacctttaatgtgaaaaacaaacagaaatattttataaggga

Function

symbol description
gpc5 Predicted to be involved in cell migration; positive regulation of canonical Wnt signaling pathway; and regulation of protein localization to membrane. Predicted to be located in several cellular components, including Golgi lumen; extracellular region; and lysosomal lumen. Predicted to be integral component of membrane. Predicted to be active in cell surface.

NR:

description
glypican-5-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K08111 GPC5; glypican 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928711.2 True 3204 mRNA 0.49 10 3083070 3170485

Neighbor

gene id symbol gene type direction distance location
LOC117596192 NA coding downstream 190985 2874908 ~ 2892085 (-)
LOC113535482 LOC108258552,LOC108258557,LOC108258559,LOC108258561 coding downstream 244281 2833613 ~ 2838789 (-)
LOC113535483 LOC108258552,LOC108258561 coding downstream 255470 2823993 ~ 2827600 (-)
LOC113535756 LOC108258552 coding downstream 271461 2808317 ~ 2811609 (-)
LOC113535480 LOC108258552,LOC108258561,LOC108258559 coding downstream 278941 2797268 ~ 2804129 (-)
LOC113535432 slitrk5,LOC108411062,LOC107558902,LOC107730401,LOC107677853,LOC107561275,LOC107698126 coding upstream 441234 3611719 ~ 3618120 (-)
LOC113535829 NA coding upstream 1286950 4457435 ~ 4457541 (-)
LOC117596196 NA coding upstream 1288832 4459317 ~ 4459423 (-)
LOC117596197 NA coding upstream 1290724 4461209 ~ 4461315 (-)
LOC117596198 NA coding upstream 1292623 4463108 ~ 4463214 (-)
G370207 NA non-coding downstream 10469 3069998 ~ 3072601 (-)
LOC117596157 NA non-coding downstream 30868 3039174 ~ 3052202 (-)
G370127 NA non-coding downstream 98140 2949421 ~ 2984930 (-)
G370019 NA non-coding downstream 261756 2818603 ~ 2821314 (-)
G370028 NA non-coding downstream 292394 2783272 ~ 2790676 (-)
G370237 NA non-coding upstream 4659 3175144 ~ 3176945 (-)
G370272 NA non-coding upstream 54535 3225020 ~ 3225235 (-)
G370282 NA non-coding upstream 59464 3229949 ~ 3230185 (-)
G370308 NA non-coding upstream 295162 3465647 ~ 3465861 (-)
G370327 NA non-coding upstream 433869 3604354 ~ 3604585 (-)
LOC117596167 NA other downstream 229859 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 508599 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 1250341 1824204 ~ 1832729 (-)
G369586 NA other downstream 1287846 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 1471404 1538453 ~ 1611666 (-)
G370658 NA other upstream 1672844 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 2218419 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 2359507 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 2771554 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 2845241 6015726 ~ 6033393 (-)

Expression


Co-expression Network