LOC113535431 (LOC108258373)


Basic Information

Item Value
gene id LOC113535431
gene name LOC108258373
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1355723 ~ 1365906 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928712.2
GTTTTTGCCAGTTCCTGAACCAGCCGTACTCACAGAGCCTTGGAGGAAAATGGACTGTGGAAAAGATGAAATACTGCATGAAGTGAAAGAATTCAAGCCCAGCATTGAGGCCCTCAGAATTGTGTTGTATGGACCGACTGGCGCTGGGAAATCATCCTTCATCAACTCAGTCCAGAGGGTCCTCTTAGGCCGTCATGCCATGAGTGCTCTGGAAAACAACACATGTACAGGAACAAGCTTCACAAAAAAAATGAACATACACAAGCTGAAGAAGGGCAGAGGTGTGCCTTATCCTCTGGAGATTGTTGACATCATGGGGCTTGAATCAGCAGAAGGAGGAATAAAAGAGGAAGACATCATCAAAGCATTTGAGGGACACATTTTAGATGACTACACTtTTAATCCTGTTGGAGCCATAACTGATGacaacccaaaacacaaaaagaaccCAACTCTGAGTGATAAGGTTCACTGCCTGGTGTGCGTTCTGTCTGCGGAGTCAGTCTCAAGAATGGAAGACAACgtttttgaaaaaatgaagaaagttaGAGAGAGTGCTAGCCTGCTggGAATCCCCCAAGTCATTGTCATGACCAGGGTGGATAAAGCCTGTGAACTAGTTAGCCAggatttaaagaaaatctaTTACAGCAAGAAGATCAAAGAGAAgGTGGATGTGTGCAGTGTTAACGTGGGCATCCCATTAAACGCCATCTACCCAGTGAAGAACTACTCCGAATCGATCACTCAGGACCTAGTTATCGACATGTTCATCCTCACGGCATTGAGAGATATTCTAAATTTTGCCAATGACTATGTGGAACGTGAGTTGGAAAAAGATGACTAGTAATGAGgcactctgctcaaacaaatCAGCTTAATTATGTCACCAATCATTAAATTTAACGAGTAATTAGTCAGTGTCCCTTCGTAGGTAATAGTAGTGTCTTTAGTGCTAATGAAGGATTATTCATTCTTTTCTGCACTGGCCCTACGTAGATACTTATAACTATTAAAAAGGTATTGTAATCAGTtacttctttgtttcttttcttttgtgttatttgtatctgtaaaatcatatttctgtaataatatAAATCTTGACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928712.2 True 1110 mRNA 0.41 7 1355723 1365906

Neighbor

gene id symbol gene type direction distance location
slc5a10 slc5a10 coding downstream 109682 1204764 ~ 1246041 (-)
LOC113535776 LOC108258401 coding downstream 165175 1167628 ~ 1190548 (-)
cacna1hb LOC108258317 coding downstream 242124 1052390 ~ 1113599 (-)
myo15ab LOC108258396,LOC107725350,LOC107692700,LOC108441473,LOC108439093 coding downstream 329702 987755 ~ 1026021 (-)
alkbh5 alkbh5 coding downstream 369153 980870 ~ 986570 (-)
en1b en1,eng1b,LOC108258368,LOC108437127,LOC102785987,LOC103355596 coding upstream 146415 1512321 ~ 1518371 (-)
pard3ba pard3b coding upstream 252914 1618820 ~ 1738935 (-)
LOC113535707 LOC108258365,LOC108437114 coding upstream 529142 1895048 ~ 1909374 (-)
klf7a LOC108258322 coding upstream 549757 1915663 ~ 1937075 (-)
LOC117596168 NA coding upstream 890515 2256421 ~ 2259148 (-)
G369243 LOC108258881,LOC108261507 non-coding downstream 78073 1277073 ~ 1277650 (-)
LOC117596193 NA non-coding downstream 85298 1266706 ~ 1270425 (-)
G369130 NA non-coding downstream 480520 871589 ~ 875203 (-)
G368944 NA non-coding downstream 654435 701084 ~ 701288 (-)
G368912 NA non-coding downstream 682693 671640 ~ 673030 (-)
G369297 NA non-coding upstream 4228 1370134 ~ 1396598 (-)
G369302 NA non-coding upstream 19015 1384921 ~ 1385662 (-)
G369305 NA non-coding upstream 30698 1396604 ~ 1396905 (-)
G369506 NA non-coding upstream 126793 1492699 ~ 1574665 (-)
G369523 NA non-coding upstream 172171 1538077 ~ 1588650 (-)
G369242 LOC108258881 other downstream 78910 1276021 ~ 1276813 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other downstream 406920 869759 ~ 948803 (-)
G369125 actb other downstream 440040 911553 ~ 915683 (-)
prkcba prkcb other downstream 653378 653453 ~ 702345 (-)
rasd3 LOC108258668 other downstream 763128 591136 ~ 592595 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other upstream 172547 1538453 ~ 1611666 (-)
G369586 NA other upstream 410413 1776319 ~ 1795224 (-)
mdh1b mdh1b other upstream 458298 1824204 ~ 1832729 (-)
LOC113535702 mx1 other upstream 1200851 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 1477306 2843212 ~ 2853211 (-)

Expression


Co-expression Network