LOC113535432 (slitrk5,LOC108411062,LOC107558902,LOC107730401,LOC107677853,LOC107561275,LOC107698126)


Basic Information

Item Value
gene id LOC113535432
gene name slitrk5,LOC108411062,LOC107558902,LOC107730401,LOC107677853,LOC107561275,LOC107698126
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 3611719 ~ 3618120 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928713.2
GATGCATGGGGCATCATCAGATttttatacagacacacacacatacacacatacacacatatacatgcatgCTGAAGGTTTGGGTCTGTTTAAACCGAATTAAACCGGCGttagaaaacaggaaaacaggaGTGATCGGATATGCGGGATGACACCACAGTCTGCAGCGGCACTACAGTGAACGGCGCCATTCAATTCGATGAAAATGCGTGTCTGGATACTGACACTAATCTTGCTGCTTGCCGCTTCTCTGAGCCTGGTTGAGATGTATGAAAATTATGGGGAGATCTGTAGGAATTTGTGCACTTGTGAAGAAAAAGAGGGCATTCTGACGGTCAGCTGCGAGAACCGGGGCATTGTAAGACTGTCAGAAATCAGCCCGGTTCATTTCCCCACGTATCACCTTCTACTGACGGGGAACCTGCTGAAAAAATTGTCCGTCAATGACTTTATCAACTATACTGGAGTCACCATTTTGCATTTAGGCAACAACGACATATCCGAAGTGGAAACTGGGGCTTTTAATGGACTCCAGGGATTAAGGAGGTTGCacctaaacaacaacaaaatagaTGTTCTTAGGGATGATACGTTCACTGGATTAGAAAACCTGGAATACCTTCAGattgattacaattttattagtattattgaACCCAATGCTCTCAGCAGGCTCCACCGTCTGACTGTGCTAATTTTGAATGACAACCTCTTGTCATCGCTGCCTACCAACATTTTCCGAAATGTGCCCTTGACCCACTTGGATCTCAGGGGCAACCGCTTGAAAATGTTCCCTTACATTGGCCTTTTGGAGCACATGGATAAAGTGGTGGAATTACAGCTAGAGGAGAATCCGTGGAATTGTTCTTGCGAACTTATCGCACTAAAAGCTTGGCTAGAAAGCATTGCCTACACGGCACTAGTTGGCGAGGTGGTCTGTGAGACTCCATTCCGGCTCCACGGCCGCGATCTCGATGAGGTCTCCAAGCAGGAGCTGTGCCCTCGGAGGGCCATTTCGGAATATGAGATGCGCCCACCGCCACCTCTCAGCACGAACGGATATTTCCAGACGACGCCGGCGGCAGTGACTTCCTCAGCCACATCCTCAGCAGTGCTGAGGTCCTCATCCCGGCCTACCAAGGGCACTCGGCAGTCCAACAAGACCAGGTCCAAGCCCACGTCTCGCATCCCAGGCAATCCCTACAACTATGGGCCAATCATAGCTTTTCAGACCAAATCTCCTGTGCCTTTGGATTGCCCCACGGCATGCACGTGCAACCTTCAGATCTCTGATCTTGGGCTCAATGTCAACTGCCAGGAACGGAAAATTGAGAGTATATCAGATCTAAAGCCCAAGCCGTATAATCCCAAAAAAATGTACCTTACTGGGAATTACATCCCTGTTGTGCGCCGATCGGATTTCGTTGAGGCAGAGGGATTGGATTTGTTGCACTTGGGAAACAATCGGATAGCACTCATACATGACAGGGCATTTGGGGATTTAATTAATCTGCGCAGGTTGTACTTGAATGGCAATTTGATAGACAGGCTCACTGCAGACATGTTCTTTGGGCTCCAGAACCTGCAGTACTTGTATTTAGAGTACAACAAGATCAAGGAGGTTGTTGCCGGTACCTTCCGCTTCGTGCCAAACCTTCAGCTGCTTTTCCTAAACAACAATCTTCTAAAAACCTTGCCGGGAGGCATCTTTTCTAGTATGTCACTGTCAAGGCTCAATCTACGCAACAACCACTTTCAAAACTTGCCTGTGAGTGGAGTTCTAGATCAGCTCAAGGCTTTGGTGCAAGTGGATCTCTTTGAAAACCCTTGGGATTGCACGTGTGATGTGGTAGGCATGAAAATATGGCTGGAGCAGCTCAACTCTGGCACTGTGGTTAATGATGTCATATGTGCAACTCCAAAGAGACTTGCAGGGCAAGACATGCGCAGCGTCCTTTCTGAACAGTTATGTCCTGATTACTCGGATATTGTTGTATCTACGGTAGCTCTGTCGGAAGCGACCTTGGAAGGGAAGGTAATCACCACAGAGACCCCCTTGAGGTTCAACACTCCTTCAAGCACTGTCCCATTGTCAGTCCTCATCCTTAGCCTCCTCCTGGTCTTCATAATGTCTGTTTTTGTGGCTGCTGGGCTGTTTGTGGTGGTCATGAAACGGCgaaaaaagtcacaaagtgaCCGCACCAGCACCAACAACTCAGACGTAAGTTCCTTTAACCTTCAGTACAGTCTTTATAGCAATCGTTCTGTACCCAAAGTCAAAACCCCAGCAGGTCATGTCTACGAGTACATCCCCCATCCTCTTGGGCACATGTGCAAAAACCCCATTTATAGATCCAGAGAAGGTACCGCTGTGGAGGATTATCCTGATCTGCATGAGCTCAAGGTTAGCTACCGAAACACCAATGAAGAAGAGCGGGATCCAACGTCGAGGAGCCCTACGTACACCGTTAGCACCATTGAACCTAGGGAGGAACCTTCGACTGCTCAGGATGCCGAGCATTTCTTCCGAGGGATCTTAGAACCAGATAAAACTCCGAATAGTGCCGGAAATAGGTATGAGTACAAGTACCCCAGTCCTGGATCTTACACGTACAACCCAAATTTCGACGTACGTCGGCAATTCTTGCATCCCGAGGGAATTAGAGAAACTATGCTCTATAGCTCAGCTCCAAGTACTGTCTACGTGGAGCCGAACAGGAATGAGTATTTGGAACTAAAGGCAAAACTCCAAATGGAGCCAGATTACCTCGAAGTTCTTGAGAAACAGACAACGTTTAGCCAGTTTTAAACCTTGTCTATGAACATGCATACTGATAGAGATAGAGATTTTCACCCCGTTTCCATGCGAAGGGTGCACTGGGGTGTACGGTGTACACCATCTTTAAAGAAACAACAGAACAAAGGCAACAAACAAAAATCCTACAATGGGGTGTGCCAAACTGTCTTACCTTAATTTTTAAAGATACATGacattaaaggaaataaaaaaggaaaaaagctcTCGGGATGAAAGCACGAGTTGTGATACAAAACTGGTGATGCAAAAATCgcaaaatctatttttttaagttgacGATTGAATTGAATACACGTAAATAAACAAACGTAGCTGTACAGATTAATCCAAGTACGTTTTTTTCAGGAGTATAATCACGCAGATACTGCGAACTTTAACAAtacaaaattgaaaaagaacACTGTATTACAGTGCATCTAACTGTGCAGGACAATTCCTCTGCTCTAGtctgtaagtaagtaagtatttATTGGTATAATCTCCatgtatttttaacattatttgatTATTCATCATTATCACCTGTACCATTATCCCTCTGTACAAGCTTTTCGTTTGTAattttttgatcatttattgTAGCTTGCATTGTACAAGTGGCTTTCTTTCAGCGGTGGCACACCCCCCCCCTTCCCTGTCCCCATCTTCCTAAACCTCCGAGTCCTCCACCTTCATCTCCAGTGTCAAAGAGAGACTTTTGCttcatttaaagatttaaaaaagaagtgtCTTTGTATGCCGTCTgcactttttggaaaaaaaaaaaaagaaagaaagaaaaatggagggCCAATGTTGGTCTTCCCAGCTACCATTAGAggaattattatatattaaaatgattcattcattcttaatatgtattttaatatgttatcaaaaacaaattcataaatGATAATTGAAGTAATAATTATGTTGTGTAATactattttaatgtaacaccTATTTTTATACAAGCATTCgcaattctttcttttttcccccttattgttttttttttttttgattgcttTCCACTTATTATTGCACTATATTGACCAAAATATGTTTATGTCATCAATAAATATGATGTCAGGttcttatatacatacatatatatacatcattGTTGGCAACACATTTCCGGTACGACAGTCCTCTGGCACGAGGAGTCAAGTGATTTTAGGAGTTACATTAGCAATGCTAATCAATACAGAGTTGTAACCAGTGTTCAGAGGCGTTCCTAAAACAATCAATGCTtctcaaataaacattttttttttctgtgcaaaaaaGGGAAGAGAAGATGTGCTATAGTAGAAGGTTATTAGCACTGAAAATTGAAAATGGCAGGGTTAATATCGCAGTAGCTCTAGGCCATGTCATCAACTCGTTGCTCGTCTGCTGCATTTTAATAAGACGTTCTGAAATCTCTTGATTGCATGAGGCTGCATTTTGACTTCTGACTATAATGTGAGTTTTTACCTTGTAATTATTGGTATTCAATTTATTTCTGGTTAAACGAATAAGGTTAATTGATCTGAATTTACGTCGCAGAAAGTACTCTCAAAAAAATAGTTCATTCCTGGTATTGGTGTGTTTTGGACCACCAAATGTTCTGACATGATAAGCTTTCGAAAATGATTAGTAGATCAAATTCAAGTCTTTATGAAAAGATTTGAATCGCCCAAATTATTGCTATTTGGTCCATGTACATTATGTTTATTagttttgcatttcatttcacagtgaaaatggaaaaacaaggaaacagctttttactttgtttttgtttttttcttggcaTGCACTAAAATAGGA
>XM_034299954.1
tatAAGATCTGATGGTCGGTGTTGAGTGTGCGGACGGATGGAGCATCATCAGCATCAGGATCCCTGCACGCGCGCACCGCCACCGTACTCCCTATACACGCGCGCGCGGCAGTGTTTAATCGTCTGCTAGTCTGAGAGAAGTGAGAGCGCGAgcgagcagagagagagagagagagagagagagcgacgatgcacgcgcgcgcgcatcgtcaccaccaccatcatcattatccGTAGAAAATTCGGTGTTAAAACGAATcggattttcttttaataaaaagaaagagagagatagagatagatagatagatagacagagagagagagtaagagagtgtgtgtgtgagagagagagagagagagagagagagagatactggaATAATCGGCACGGATTTTGCAGCCTGGCGCGCGCTACGTTCCGGTTAACGGATGTCGTGATGCAGCTGCCGCTTCGGAGACGATCAGCCCGATGACACCACAGTCTGCAGCGGCACTACAGTGAACGGCGCCATTCAATTCGATGAAAATGCGTGTCTGGATACTGACACTAATCTTGCTGCTTGCCGCTTCTCTGAGCCTGGTTGAGATGTATGAAAATTATGGGGAGATCTGTAGGAATTTGTGCACTTGTGAAGAAAAAGAGGGCATTCTGACGGTCAGCTGCGAGAACCGGGGCATTGTAAGACTGTCAGAAATCAGCCCGGTTCATTTCCCCACGTATCACCTTCTACTGACGGGGAACCTGCTGAAAAAATTGTCCGTCAATGACTTTATCAACTATACTGGAGTCACCATTTTGCATTTAGGCAACAACGACATATCCGAAGTGGAAACTGGGGCTTTTAATGGACTCCAGGGATTAAGGAGGTTGCacctaaacaacaacaaaatagaTGTTCTTAGGGATGATACGTTCACTGGATTAGAAAACCTGGAATACCTTCAGattgattacaattttattagtattattgaACCCAATGCTCTCAGCAGGCTCCACCGTCTGACTGTGCTAATTTTGAATGACAACCTCTTGTCATCGCTGCCTACCAACATTTTCCGAAATGTGCCCTTGACCCACTTGGATCTCAGGGGCAACCGCTTGAAAATGTTCCCTTACATTGGCCTTTTGGAGCACATGGATAAAGTGGTGGAATTACAGCTAGAGGAGAATCCGTGGAATTGTTCTTGCGAACTTATCGCACTAAAAGCTTGGCTAGAAAGCATTGCCTACACGGCACTAGTTGGCGAGGTGGTCTGTGAGACTCCATTCCGGCTCCACGGCCGCGATCTCGATGAGGTCTCCAAGCAGGAGCTGTGCCCTCGGAGGGCCATTTCGGAATATGAGATGCGCCCACCGCCACCTCTCAGCACGAACGGATATTTCCAGACGACGCCGGCGGCAGTGACTTCCTCAGCCACATCCTCAGCAGTGCTGAGGTCCTCATCCCGGCCTACCAAGGGCACTCGGCAGTCCAACAAGACCAGGTCCAAGCCCACGTCTCGCATCCCAGGCAATCCCTACAACTATGGGCCAATCATAGCTTTTCAGACCAAATCTCCTGTGCCTTTGGATTGCCCCACGGCATGCACGTGCAACCTTCAGATCTCTGATCTTGGGCTCAATGTCAACTGCCAGGAACGGAAAATTGAGAGTATATCAGATCTAAAGCCCAAGCCGTATAATCCCAAAAAAATGTACCTTACTGGGAATTACATCCCTGTTGTGCGCCGATCGGATTTCGTTGAGGCAGAGGGATTGGATTTGTTGCACTTGGGAAACAATCGGATAGCACTCATACATGACAGGGCATTTGGGGATTTAATTAATCTGCGCAGGTTGTACTTGAATGGCAATTTGATAGACAGGCTCACTGCAGACATGTTCTTTGGGCTCCAGAACCTGCAGTACTTGTATTTAGAGTACAACAAGATCAAGGAGGTTGTTGCCGGTACCTTCCGCTTCGTGCCAAACCTTCAGCTGCTTTTCCTAAACAACAATCTTCTAAAAACCTTGCCGGGAGGCATCTTTTCTAGTATGTCACTGTCAAGGCTCAATCTACGCAACAACCACTTTCAAAACTTGCCTGTGAGTGGAGTTCTAGATCAGCTCAAGGCTTTGGTGCAAGTGGATCTCTTTGAAAACCCTTGGGATTGCACGTGTGATGTGGTAGGCATGAAAATATGGCTGGAGCAGCTCAACTCTGGCACTGTGGTTAATGATGTCATATGTGCAACTCCAAAGAGACTTGCAGGGCAAGACATGCGCAGCGTCCTTTCTGAACAGTTATGTCCTGATTACTCGGATATTGTTGTATCTACGGTAGCTCTGTCGGAAGCGACCTTGGAAGGGAAGGTAATCACCACAGAGACCCCCTTGAGGTTCAACACTCCTTCAAGCACTGTCCCATTGTCAGTCCTCATCCTTAGCCTCCTCCTGGTCTTCATAATGTCTGTTTTTGTGGCTGCTGGGCTGTTTGTGGTGGTCATGAAACGGCgaaaaaagtcacaaagtgaCCGCACCAGCACCAACAACTCAGACGTAAGTTCCTTTAACCTTCAGTACAGTCTTTATAGCAATCGTTCTGTACCCAAAGTCAAAACCCCAGCAGGTCATGTCTACGAGTACATCCCCCATCCTCTTGGGCACATGTGCAAAAACCCCATTTATAGATCCAGAGAAGGTACCGCTGTGGAGGATTATCCTGATCTGCATGAGCTCAAGGTTAGCTACCGAAACACCAATGAAGAAGAGCGGGATCCAACGTCGAGGAGCCCTACGTACACCGTTAGCACCATTGAACCTAGGGAGGAACCTTCGACTGCTCAGGATGCCGAGCATTTCTTCCGAGGGATCTTAGAACCAGATAAAACTCCGAATAGTGCCGGAAATAGGTATGAGTACAAGTACCCCAGTCCTGGATCTTACACGTACAACCCAAATTTCGACGTACGTCGGCAATTCTTGCATCCCGAGGGAATTAGAGAAACTATGCTCTATAGCTCAGCTCCAAGTACTGTCTACGTGGAGCCGAACAGGAATGAGTATTTGGAACTAAAGGCAAAACTCCAAATGGAGCCAGATTACCTCGAAGTTCTTGAGAAACAGACAACGTTTAGCCAGTTTTAAACCTTGTCTATGAACATGCATACTGATAGAGATAGAGATTTTCACCCCGTTTCCATGCGAAGGGTGCACTGGGGTGTACGGTGTACACCATCTTTAAAGAAACAACAGAACAAAGGCAACAAACAAAAATCCTACAATGGGGTGTGCCAAACTGTCTTACCTTAATTTTTAAAGATACATGacattaaaggaaataaaaaaggaaaaaagctcTCGGGATGAAAGCACGAGTTGTGATACAAAACTGGTGATGCAAAAATCgcaaaatctatttttttaagttgacGATTGAATTGAATACACGTAAATAAACAAACGTAGCTGTACAGATTAATCCAAGTACGTTTTTTTCAGGAGTATAATCACGCAGATACTGCGAACTTTAACAAtacaaaattgaaaaagaacACTGTATTACAGTGCATCTAACTGTGCAGGACAATTCCTCTGCTCTAGtctgtaagtaagtaagtatttATTGGTATAATCTCCatgtatttttaacattatttgatTATTCATCATTATCACCTGTACCATTATCCCTCTGTACAAGCTTTTCGTTTGTAattttttgatcatttattgTAGCTTGCATTGTACAAGTGGCTTTCTTTCAGCGGTGGCACACCCCCCCCCTTCCCTGTCCCCATCTTCCTAAACCTCCGAGTCCTCCACCTTCATCTCCAGTGTCAAAGAGAGACTTTTGCttcatttaaagatttaaaaaagaagtgtCTTTGTATGCCGTCTgcactttttggaaaaaaaaaaaaagaaagaaagaaaaatggagggCCAATGTTGGTCTTCCCAGCTACCATTAGAggaattattatatattaaaatgattcattcattcttaatatgtattttaatatgttatcaaaaacaaattcataaatGATAATTGAAGTAATAATTATGTTGTGTAATactattttaatgtaacaccTATTTTTATACAAGCATTCgcaattctttcttttttcccccttattgttttttttttttttgattgcttTCCACTTATTATTGCACTATATTGACCAAAATATGTTTATGTCATCAATAAATATGATGTCAGGttcttatatacatacatatatatacatcattGTTGGCAACACATTTCCGGTACGACAGTCCTCTGGCACGAGGAGTCAAGTGATTTTAGGAGTTACATTAGCAATGCTAATCAATACAGAGTTGTAACCAGTGTTCAGAGGCGTTCCTAAAACAATCAATGCTtctcaaataaacattttttttttctgtgcaaaaaaGGGAAGAGAAGATGTGCTATAGTAGAAGGTTATTAGCACTGAAAATTGAAAATGGCAGGGTTAATATCGCAGTAGCTCTAGGCCATGTCATCAACTCGTTGCTCGTCTGCTGCATTTTAATAAGACGTTCTGAAATCTCTTGATTGCATGAGGCTGCATTTTGACTTCTGACTATAATGTGAGTTTTTACCTTGTAATTATTGGTATTCAATTTATTTCTGGTTAAACGAATAAGGTTAATTGATCTGAATTTACGTCGCAGAAAGTACTCTCAAAAAAATAGTTCATTCCTGGTATTGGTGTGTTTTGGACCACCAAATGTTCTGACATGATAAGCTTTCGAAAATGATTAGTAGATCAAATTCAAGTCTTTATGAAAAGATTTGAATCGCCCAAATTATTGCTATTTGGTCCATGTACATTATGTTTATTagttttgcatttcatttcacagtgaaaatggaaaaacaaggaaacagctttttactttgtttttgtttttttcttggcaTGCACTAAAATAGGA

Function

symbol description
slitrk5 Predicted to be involved in axonogenesis. Predicted to act upstream of or within several processes, including grooming behavior; nervous system development; and positive regulation of synapse assembly. Part of receptor complex.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928713.2 False 4621 mRNA 0.42 2 3611719 3616892
XM_034299954.1 True 4945 mRNA 0.43 2 3611719 3618120

Neighbor

gene id symbol gene type direction distance location
gpc5a gpc5 coding downstream 441234 3083070 ~ 3170485 (-)
LOC117596192 NA coding downstream 719634 2874908 ~ 2892085 (-)
LOC113535482 LOC108258552,LOC108258557,LOC108258559,LOC108258561 coding downstream 772930 2833613 ~ 2838789 (-)
LOC113535483 LOC108258552,LOC108258561 coding downstream 784119 2823993 ~ 2827600 (-)
LOC113535756 LOC108258552 coding downstream 800110 2808317 ~ 2811609 (-)
LOC113535829 NA coding upstream 839315 4457435 ~ 4457541 (-)
LOC117596196 NA coding upstream 841197 4459317 ~ 4459423 (-)
LOC117596197 NA coding upstream 843089 4461209 ~ 4461315 (-)
LOC117596198 NA coding upstream 844988 4463108 ~ 4463214 (-)
LOC113535753 LOC108258306,LOC108439384,LOC106595798 coding upstream 870029 4488149 ~ 4504739 (-)
G370327 NA non-coding downstream 7134 3604354 ~ 3604585 (-)
G370308 NA non-coding downstream 145858 3465647 ~ 3465861 (-)
G370282 NA non-coding downstream 381534 3229949 ~ 3230185 (-)
G370272 NA non-coding downstream 386484 3225020 ~ 3225235 (-)
G370237 NA non-coding downstream 434774 3175144 ~ 3176945 (-)
G370372 NA non-coding upstream 159009 3777129 ~ 3777343 (-)
G370415 NA non-coding upstream 363590 3981710 ~ 3982940 (-)
G370416 NA non-coding upstream 364991 3983111 ~ 3983579 (-)
G370418 NA non-coding upstream 368085 3986205 ~ 3986622 (-)
G370425 NA non-coding upstream 523802 4141922 ~ 4142128 (-)
LOC117596167 NA other downstream 758508 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 1037248 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 1778990 1824204 ~ 1832729 (-)
G369586 NA other downstream 1816495 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 2000053 1538453 ~ 1611666 (-)
G370658 NA other upstream 1225209 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 1770784 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 1911872 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 2323919 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 2397606 6015726 ~ 6033393 (-)

Expression


Co-expression Network