LOC113535442 (LOC108258868,LOC108258869)


Basic Information

Item Value
gene id LOC113535442
gene name LOC108258868,LOC108258869
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2501030 ~ 2515018 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928727.2
GACATATTTGTCTTTGGCCCTCTGGATGCCTGTAAACACATGCAAATTATTATACTTTCCCGTATGCTGCCATTGCACTGACACATCCGTGTATGACGTCACTCTCTAGGTTTGCATATGACAGAGACAGGAGGGGTGAAGAGGACAGACTAGTGAGAGGACAGACAAGTGAGAGGACACTGAGGTACAACAACATACAGGGAAGagaaatacatacaaaaaactGTGAGCATCCAGaaatggGTCATAACTGGGTTTCTGTCATCATCGTTTtctcagTTGTTTATAGTGCAGAGGCATTAATTCCTCATCGCTATCACTTTGTGAATGAGAGTAAAAACTGGAGTGAAGCTCAGATTTACTGCAGAGAGAAATACACTGATCTCGCCACCATCAACAACATGGAAGAGATGAAGAAGCTGAATCACACACTGAAGACGGAAACTGCAGAGCGAGCTTGGATCGGTCTACAGAGAGAGGGCACTGGGGAATGGCAGTGGTCTCTGGCAGACCAAACTTTCTACAGAGACGGAGACACTTACAGAAACTGGAGGAGTACAGAACCAAACAATTGCAAGAAAAATGAGTTCTGTGTTCAACTCATTATGAACTATGGCTCGTGGAATGATGAGCAGTGCAATGAGAAAAGACCTTTTGTGTGTTATGAAGaaaatgacacaaacactaacagATACAAATTGATTAATGAGACAAAGACCTGGTATGATGCTCAGACCTACTGCAGAGAGAAATACATTGATCTGGTCAGTGTGAGGAACCAAACTGAGAATGAGGAGATCTGGAGAGTGAGTCAAAATTCAACTAATGAAGATGTTTGGATTGGTCTGTTTAATAACTCCTGGAAGTGGTCAGATCAGAGTAATTCCTCATTCAGATACTGGAGCTCTAACAAACCCAGTGGACATTTGAACTGTActgcagtgtctgtgtctgaGCAACACTACTGGAGTAATGTGAACTGCAAGGAAAAGCTCCCATTCATCTGCCATGAGAATAAGCTGATCCTGATTAAGGAGAATCTGACCTGGAAAGAAGCTCTGAGATACTGCAGGAACCATCATTATGACCTGGTCTCAGTGCGCACTGAGGAGATGCAGCTCTGGGTGAAGGAAGTGGCTCGAAATGCCTCCACTGAACACGTGTGGCTCGGCCTGCGTCACACCTGCGCTCTGGGCTTCTGGTACTGGGTGACTGGAGAGATGATCTGCTACCAGGACTGGGCTCCGGGGAATGGGACAGGGTTCGAAGACTGCAGCAATGAGGAGAGAACCGGAGCAGTGCAGTCTGGAGGAGAGCAGCAGTGGATCAGCCTGCCTCAGAGCTACACACTCAACTTCATCTGCTCTACCTATGAAgGCTGAAGACAAGCTGTGGTTCATCTTCTGTATCCAACAttcacattactcacattattCACAATTAACATTAGTATCCCATTTATATATTTTcgacatactgtacattttaaatttgtaaatttaaatataaatttaaaatgtcttgTTCATCCTGATTATTTATCTTactattcaaattaaattatttggatgtcctcagaattatttaCCCCCCCTCCCCCCGTTCCTCAACACAAATTTTCTCTGCCAAATTAGATGGAGAATGCTGGTAGGCGGCAATTTTCATGCCATGCCACAGATTTTCACAGGGGTTTGACTCAGGGCCATTTCAGAACACAaaccttctttttttcaaaCCATTGCTTTGTAGTTTTTGGACCATCGTTCTCTTGGGACATAAATTTTTGCACTAGACACAGATTTATGGTTGACTGGAACAGATTTCACTCAGGAATTTGCTTGCATTTGGCTTCATCCACGTTGCCCTTGATGGCAACAAGATTTCCAGGTTCCTCTTGCTGAAAAGCAACTCCAGAGCaggatgctaccaccaccaccactaccaccactcTTGATGGTGTTACCTGTACCGGTGTTGGACTGTATTTGGTCTGCGCCAAACATAACACTTTGGTTTTTAGACCAAATGGCTCAAAACCTTTTTCCAAAAGTGTACTTTTATGTGATGTTAGCCTTTCTCAGAAGTGGCTTCCTTCTGGCCTCTCTCCCATAGAGGCCAGGCCTCTGAAGAGCTGGTGATCTTGTTGATGTCTGTGCAGGTTCTCATATTTCAGCCAGTGAGCTCTATAACTCCTCCAGTGTCATAGCTGGACTCTTGGACACTTCTCTTGCAGTTGCCTTTGAGCTTGGTAGTGTCtgggttgtgccatattttttttccccactttgttataatggatttcacagtgCTCCTTGTATGGTTCAAAGCTTTGTTGATCTTTTTATAACCTTCTCCAgcgttttttttctcctgtttgcCATTTCAGCCATGAGACCACCCAAATTCAGTGATATTTTTCATGCCAGCATACAATTGGACACaggtggatttgaaatgaacacaGGTGCAcgttgtttaacatatttagtaTGAGTGCTCAAGTAAATTAATTACCTCTCTTAATTTAGACTGTTAAAAAATACTTatcaatttttatatattttctatatactgtatttgattttaaatagttaaattattttaaaatcattttataataattttgagGACATCTGAATAATATTCTTAACTTTATTTCTTTAGATAgtcactcagaaaaaaaaattggctttATAATATACTTAAATTTTATGTTACAGTACATCAAAAAGAGAAATGGGTGAATACATGTGACACTTATGGTACAtgtaggtctgtgtgtgtgtgtgtgtaggtaaagAGTTAATGTAGATTGCATTTGccgtgtttatatttttataaatagatGGGTCTATTGGgtaatcaaattaaatgtaattgtttttcATATGCCTTCTTAAAAGGTAATTTAGTATTGTACATAAGACAGATCATGCCGTAAAATCATACATGTAGCAGCATACATGTTtcatatacaccgatcagccataacattaaaaccactgacaggtgaagtgaataacattgattatctcaatCATATCATCAAACATGTcagggggtgggatatattaggcagcatgtgaacagtcagttctcgaagatgatgtgtttgaagcaggataaatgggcaagcgtaaaggatctgagcgactttgaca
>XM_026928728.2
CCCTCGTTCATAATTTTCATCCTGAAAATGACGTCACTCTCTAGGTTTGCATATGACAGAGACAGGAGGGGTGAAGAGGACAGACTAGTGAGAGGACAGACAAGTGAGAGGACACTGAGGTACAACAACATACAGGGAAGagaaatacatacaaaaaactGTGAGCATCCAGaaatggGTCATAACTGGGTTTCTGTCATCATCGTTTtctcagTTGTTTATAGTGCAGAGGCATTAATTCCTCATCGCTATCACTTTGTGAATGAGAGTAAAAACTGGAGTGAAGCTCAGATTTACTGCAGAGAGAAATACACTGATCTCGCCACCATCAACAACATGGAAGAGATGAAGAAGCTGAATCACACACTGAAGACGGAAACTGCAGAGCGAGCTTGGATCGGTCTACAGAGAGAGGGCACTGGGGAATGGCAGTGGTCTCTGGCAGACCAAACTTTCTACAGAGACGGAGACACTTACAGAAACTGGAGGAGTACAGAACCAAACAATTGCAAGAAAAATGAGTTCTGTGTTCAACTCATTATGAACTATGGCTCGTGGAATGATGAGCAGTGCAATGAGAAAAGACCTTTTGTGTGTTATGAAGaaaatgacacaaacactaacagATACAAATTGATTAATGAGACAAAGACCTGGTATGATGCTCAGACCTACTGCAGAGAGAAATACATTGATCTGGTCAGTGTGAGGAACCAAACTGAGAATGAGGAGATCTGGAGAGTGAGTCAAAATTCAACTAATGAAGATGTTTGGATTGGTCTGTTTAATAACTCCTGGAAGTGGTCAGATCAGAGTAATTCCTCATTCAGATACTGGAGCTCTAACAAACCCAGTGGACATTTGAACTGTActgcagtgtctgtgtctgaGCAACACTACTGGAGTAATGTGAACTGCAAGGAAAAGCTCCCATTCATCTGCCATGAGAATAAGCTGATCCTGATTAAGGAGAATCTGACCTGGAAAGAAGCTCTGAGATACTGCAGGAACCATCATTATGACCTGGTCTCAGTGCGCACTGAGGAGATGCAGCTCTGGGTGAAGGAAGTGGCTCGAAATGCCTCCACTGAACACGTGTGGCTCGGCCTGCGTCACACCTGCGCTCTGGGCTTCTGGTACTGGGTGACTGGAGAGATGATCTGCTACCAGGACTGGGCTCCGGGGAATGGGACAGGGTTCGAAGACTGCAGCAATGAGGAGAGAACCGGAGCAGTGCAGTCTGGAGGAGAGCAGCAGTGGATCAGCCTGCCTCAGAGCTACACACTCAACTTCATCTGCTCTACCTATGAAgGCTGAAGACAAGCTGTGGTTCATCTTCTGTATCCAACAttcacattactcacattattCACAATTAACATTAGTATCCCATTTATATATTTTcgacatactgtacattttaaatttgtaaatttaaatataaatttaaaatgtcttgTTCATCCTGATTATTTATCTTactattcaaattaaattatttggatgtcctcagaattatttaCCCCCCCTCCCCCCGTTCCTCAACACAAATTTTCTCTGCCAAATTAGATGGAGAATGCTGGTAGGCGGCAATTTTCATGCCATGCCACAGATTTTCACAGGGGTTTGACTCAGGGCCATTTCAGAACACAaaccttctttttttcaaaCCATTGCTTTGTAGTTTTTGGACCATCGTTCTCTTGGGACATAAATTTTTGCACTAGACACAGATTTATGGTTGACTGGAACAGATTTCACTCAGGAATTTGCTTGCATTTGGCTTCATCCACGTTGCCCTTGATGGCAACAAGATTTCCAGGTTCCTCTTGCTGAAAAGCAACTCCAGAGCaggatgctaccaccaccaccactaccaccactcTTGATGGTGTTACCTGTACCGGTGTTGGACTGTATTTGGTCTGCGCCAAACATAACACTTTGGTTTTTAGACCAAATGGCTCAAAACCTTTTTCCAAAAGTGTACTTTTATGTGATGTTAGCCTTTCTCAGAAGTGGCTTCCTTCTGGCCTCTCTCCCATAGAGGCCAGGCCTCTGAAGAGCTGGTGATCTTGTTGATGTCTGTGCAGGTTCTCATATTTCAGCCAGTGAGCTCTATAACTCCTCCAGTGTCATAGCTGGACTCTTGGACACTTCTCTTGCAGTTGCCTTTGAGCTTGGTAGTGTCtgggttgtgccatattttttttccccactttgttataatggatttcacagtgCTCCTTGTATGGTTCAAAGCTTTGTTGATCTTTTTATAACCTTCTCCAgcgttttttttctcctgtttgcCATTTCAGCCATGAGACCACCCAAATTCAGTGATATTTTTCATGCCAGCATACAATTGGACACaggtggatttgaaatgaacacaGGTGCAcgttgtttaacatatttagtaTGAGTGCTCAAGTAAATTAATTACCTCTCTTAATTTAGACTGTTAAAAAATACTTatcaatttttatatattttctatatactgtatttgattttaaatagttaaattattttaaaatcattttataataattttgagGACATCTGAATAATATTCTTAACTTTATTTCTTTAGATAgtcactcagaaaaaaaaattggctttATAATATACTTAAATTTTATGTTACAGTACATCAAAAAGAGAAATGGGTGAATACATGTGACACTTATGGTACAtgtaggtctgtgtgtgtgtgtgtgtaggtaaagAGTTAATGTAGATTGCATTTGccgtgtttatatttttataaatagatGGGTCTATTGGgtaatcaaattaaatgtaattgtttttcATATGCCTTCTTAAAAGGTAATTTAGTATTGTACATAAGACAGATCATGCCGTAAAATCATACATGTAGCAGCATACATGTTtcatatacaccgatcagccataacattaaaaccactgacaggtgaagtgaataacattgattatctcaatCATATCATCAAACATGTcagggggtgggatatattaggcagcatgtgaacagtcagttctcgaagatgatgtgtttgaagcaggataaatgggcaagcgtaaaggatctgagcgactttgaca
>XM_034299960.1
GTTTACGTCTTGTTCAGTTGCTCTTgatatcaaaatatatttatttattccagacACTGACTAGATGGCAGCTGATAAACGAAGCAAGGGAGAGATAGACACCTGGAGGAGGACACCTGGGAACGAATGACGTCACTCTCTAGGTTTGCATATGACAGAGACAGGAGGGGTGAAGAGGACAGACTAGTGAGAGGACAGACAAGTGAGAGGACACTGAGGTACAACAACATACAGGGAAGagaaatacatacaaaaaactGTGAGCATCCAGaaatggGTCATAACTGGGTTTCTGTCATCATCGTTTtctcagTTGTTTATAGTGCAGAGGCATTAATTCCTCATCGCTATCACTTTGTGAATGAGAGTAAAAACTGGAGTGAAGCTCAGATTTACTGCAGAGAGAAATACACTGATCTCGCCACCATCAACAACATGGAAGAGATGAAGAAGCTGAATCACACACTGAAGACGGAAACTGCAGAGCGAGCTTGGATCGGTCTACAGAGAGAGGGCACTGGGGAATGGCAGTGGTCTCTGGCAGACCAAACTTTCTACAGAGACGGAGACACTTACAGAAACTGGAGGAGTACAGAACCAAACAATTGCAAGAAAAATGAGTTCTGTGTTCAACTCATTATGAACTATGGCTCGTGGAATGATGAGCAGTGCAATGAGAAAAGACCTTTTGTGTGTTATGAAGaaaatgacacaaacactaacagATACAAATTGATTAATGAGACAAAGACCTGGTATGATGCTCAGACCTACTGCAGAGAGAAATACATTGATCTGGTCAGTGTGAGGAACCAAACTGAGAATGAGGAGATCTGGAGAGTGAGTCAAAATTCAACTAATGAAGATGTTTGGATTGGTCTGTTTAATAACTCCTGGAAGTGGTCAGATCAGAGTAATTCCTCATTCAGATACTGGAGCTCTAACAAACCCAGTGGACATTTGAACTGTActgcagtgtctgtgtctgaGCAACACTACTGGAGTAATGTGAACTGCAAGGAAAAGCTCCCATTCATCTGCCATGAGAATAAGCTGATCCTGATTAAGGAGAATCTGACCTGGAAAGAAGCTCTGAGATACTGCAGGAACCATCATTATGACCTGGTCTCAGTGCGCACTGAGGAGATGCAGCTCTGGGTGAAGGAAGTGGCTCGAAATGCCTCCACTGAACACGTGTGGCTCGGCCTGCGTCACACCTGCGCTCTGGGCTTCTGGTACTGGGTGACTGGAGAGATGATCTGCTACCAGGACTGGGCTCCGGGGAATGGGACAGGGTTCGAAGACTGCAGCAATGAGGAGAGAACCGGAGCAGTGCAGTCTGGAGGAGAGCAGCAGTGGATCAGCCTGCCTCAGAGCTACACACTCAACTTCATCTGCTCTACCTATGAAgGCTGAAGACAAGCTGTGGTTCATCTTCTGTATCCAACAttcacattactcacattattCACAATTAACATTAGTATCCCATTTATATATTTTcgacatactgtacattttaaatttgtaaatttaaatataaatttaaaatgtcttgTTCATCCTGATTATTTATCTTactattcaaattaaattatttggatgtcctcagaattatttaCCCCCCCTCCCCCCGTTCCTCAACACAAATTTTCTCTGCCAAATTAGATGGAGAATGCTGGTAGGCGGCAATTTTCATGCCATGCCACAGATTTTCACAGGGGTTTGACTCAGGGCCATTTCAGAACACAaaccttctttttttcaaaCCATTGCTTTGTAGTTTTTGGACCATCGTTCTCTTGGGACATAAATTTTTGCACTAGACACAGATTTATGGTTGACTGGAACAGATTTCACTCAGGAATTTGCTTGCATTTGGCTTCATCCACGTTGCCCTTGATGGCAACAAGATTTCCAGGTTCCTCTTGCTGAAAAGCAACTCCAGAGCaggatgctaccaccaccaccactaccaccactcTTGATGGTGTTACCTGTACCGGTGTTGGACTGTATTTGGTCTGCGCCAAACATAACACTTTGGTTTTTAGACCAAATGGCTCAAAACCTTTTTCCAAAAGTGTACTTTTATGTGATGTTAGCCTTTCTCAGAAGTGGCTTCCTTCTGGCCTCTCTCCCATAGAGGCCAGGCCTCTGAAGAGCTGGTGATCTTGTTGATGTCTGTGCAGGTTCTCATATTTCAGCCAGTGAGCTCTATAACTCCTCCAGTGTCATAGCTGGACTCTTGGACACTTCTCTTGCAGTTGCCTTTGAGCTTGGTAGTGTCtgggttgtgccatattttttttccccactttgttataatggatttcacagtgCTCCTTGTATGGTTCAAAGCTTTGTTGATCTTTTTATAACCTTCTCCAgcgttttttttctcctgtttgcCATTTCAGCCATGAGACCACCCAAATTCAGTGATATTTTTCATGCCAGCATACAATTGGACACaggtggatttgaaatgaacacaGGTGCAcgttgtttaacatatttagtaTGAGTGCTCAAGTAAATTAATTACCTCTCTTAATTTAGACTGTTAAAAAATACTTatcaatttttatatattttctatatactgtatttgattttaaatagttaaattattttaaaatcattttataataattttgagGACATCTGAATAATATTCTTAACTTTATTTCTTTAGATAgtcactcagaaaaaaaaattggctttATAATATACTTAAATTTTATGTTACAGTACATCAAAAAGAGAAATGGGTGAATACATGTGACACTTATGGTACAtgtaggtctgtgtgtgtgtgtgtgtaggtaaagAGTTAATGTAGATTGCATTTGccgtgtttatatttttataaatagatGGGTCTATTGGgtaatcaaattaaatgtaattgtttttcATATGCCTTCTTAAAAGGTAATTTAGTATTGTACATAAGACAGATCATGCCGTAAAATCATACATGTAGCAGCATACATGTTtcatatacaccgatcagccataacattaaaaccactgacaggtgaagtgaataacattgattatctcaatCATATCATCAAACATGTcagggggtgggatatattaggcagcatgtgaacagtcagttctcgaagatgatgtgtttgaagcaggataaatgggcaagcgtaaaggatctgagcgactttgaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928727.2 False 3161 mRNA 0.40 7 2501030 2509139
XM_026928728.2 False 3096 mRNA 0.40 7 2501030 2515018
XM_034299960.1 True 3195 mRNA 0.40 7 2501030 2512436

Neighbor

gene id symbol gene type direction distance location
LOC113535761 NA coding downstream 150041 2347228 ~ 2350989 (-)
LOC113535598 LOC108258873 coding downstream 169360 2282791 ~ 2331670 (-)
LOC113535651 NA coding downstream 229377 2261289 ~ 2271653 (-)
LOC117596168 NA coding downstream 241882 2256421 ~ 2259148 (-)
klf7a LOC108258322 coding downstream 563955 1915663 ~ 1937075 (-)
LOC113535562 LOC108258657 coding upstream 8097 2523115 ~ 2542866 (-)
LOC113535812 mx1 coding upstream 60432 2575450 ~ 2583050 (-)
efnb2b LOC108259076 coding upstream 102608 2617626 ~ 2633096 (-)
cpo LOC108258336,LOC108440461 coding upstream 122317 2637335 ~ 2642686 (-)
atic atic,pur9 coding upstream 203039 2718057 ~ 2728695 (-)
LOC113535806 NA non-coding downstream 155497 2343113 ~ 2345533 (-)
LOC117596129 NA non-coding downstream 255872 2199025 ~ 2245158 (-)
LOC117596130 NA non-coding downstream 313088 2186646 ~ 2187942 (-)
LOC117596194 NA non-coding downstream 356579 2115578 ~ 2144451 (-)
G369663 NA non-coding downstream 479715 2018715 ~ 2021315 (-)
G369907 NA non-coding upstream 5480 2520498 ~ 2522127 (-)
G369924 LOC107702554 non-coding upstream 40961 2555979 ~ 2558809 (-)
G369926 NA non-coding upstream 44195 2559213 ~ 2560060 (-)
G369928 pcnp non-coding upstream 45862 2560880 ~ 2562458 (-)
G369930 NA non-coding upstream 47786 2562804 ~ 2563537 (-)
mdh1b mdh1b other downstream 668301 1824204 ~ 1832729 (-)
G369586 NA other downstream 705806 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 889364 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 1224217 1276021 ~ 1276813 (-)
G369125 actb other downstream 1585347 911553 ~ 915683 (-)
LOC113535702 mx1 other upstream 51739 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 328194 2843212 ~ 2853211 (-)
G370658 NA other upstream 2328311 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 2873886 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 3014974 5529992 ~ 5547032 (-)

Expression


Co-expression Network