LOC113535480 (LOC108258552,LOC108258561,LOC108258559)


Basic Information

Item Value
gene id LOC113535480
gene name LOC108258552,LOC108258561,LOC108258559
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2797268 ~ 2804129 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928789.2
gtgtgagagcaggaAAATGGCGGAGGCCAGTATTTTACATCATATTTCAGTAGATCAGTTCAGTTGTCCCTTGTGTCTGGATCTCCTGAAGGATCCGGTGACTATCCCCTGTGGTCACAGTTACtgtaaggtgtgtattaatgacTGCTGGGATCAGGAGGATGAGAAGGGCATctacagctgtcctcagtgcagaGACACTTTCACTCTGAGGCCTGTTATAGGCAGAAACAACATGCTggctgaagtggtggagaaaTTGAAGAAGATTGAAGTccaagctgcttctcctgctcactgttacgctggacctggagatgtggagtgtgatttcTGCACTGGGAGAAAACTCAAAGCCATCAAGTCCTGTCTGATGTGTCTGACTTCCTTTTGTGAAACTCATCTTAAACCCCATCTTGAACTTCCTGCTTTGAAAAAGCACACCTTAATCGAAGCCTCCTCAAAACTCCAGGAGAAGATCTGCTCTCAACATGACAAACTTATGGAGATCTACTGTCGTACTGACCAAAGGTGCATTTGTTCTTTGTGCATGTTGGATAATCACAAATGCCACGATGCTGTATCACTTTCAGCAGAGAGAACTGAGAAACAGAGTGAGCTAAAGAAGGAGCAGATGAAATGCCAGCAGAGaatccaggagaagcagaagaaggtgcaggagctgaaacaggcTGTGAACATGATTAAGTCCCATGCTCAGACAGCAGTGGAGGACAGTGAGATTATCTTTACTGAGATGATCAGCTTCATGGAGAAAAAGCGCTCAGAGGTGACGgagctgatcagagctcaggagaaggCTGAAGTGCGTCGAGCTGAACGACTCCTGgagcaactggagcaggagatcACTGATCTTAATAGGAGAGTCACTGAGAtggagcagctttcacacacacacgatcacatccACTTCTTCCAGagtttccggtctctctgtgtctcttctgGACGTGAGGATTCACCCAGCATCACTGTCCATCAACATCTCTCATTCGATGGAGTGAGGAATTCTCTCTCAGATCTGAAAAAGCGATTCGAGGAATTCTGCAAGAAGGAATTCAACAAAATCCCTCCACATGaactcagctacaccTGCTTCCTTATCCTCTTTTCGCACACTCCACGAGAAGctggcaggggtggtggtacagCTGCAGCAGTTCAGAAGATTTCACCCTCAGAGCCAACGAGCagagaagattttctgaaatatttctgtTATCTGACTCTGGATCCCAACACAGCAAATCATTACCTTCATCTGTCTGAGAAGAACAGAGTGGTGACATGCAGTCTCAAAAAGCAGCTGTACTCTGATCTTCCAGAGAAGTTCGACTCCTGTAGTCAGGTGATGTGTAAGGAGAGTTTATGTGGACGCTGTTACTGGGAAGTGGAGTGGAGAGGTGTTGTGTCCATCTCAGTCTCCTATAAAGAGATCAGGAGGAAAGGAGCGGGTAAAGAGTGTGAGTTTGGACGAAACAGTCAGTCTTGGAGTCtgtgcttttcttctttttcttcctctctctctttctatcacgACGACATGAAAACTGAGCTTGGAGTTCCATCATCCTCCagaataggagtgtatgtggatcaGAACGCAGGAAGtctgtccttctacagcgtCTCTGACACAATGAGGCTTGtccacagagtccacaccacattcactcagcctctaTACGCTGGGTTTGGGGTTTCTGGAACTGTGAGGTTGTGTGACCCAAAATAACAGTAGATGAAAAATTCTGGCTTTTTTCCTCATTGTTCCTCAGTTGTGATAAAACTATAACTTTAACGCGATAAACGTTTAAACATTGGGTTTAGACTCGGTCTGGGATCATCAGCTACACTGTTGTACagaataaaactattaaaaaggTGAACACTTTGTTTAGCTCTGCTGTGTTGAAATTACACTGTAAGTTAAAAATAACGAAACTGATCTTAGTTTGAGTGAGATTACTCCTACAGTAAAGAgtgctgtttttaattaaattgatgccacagcatctcagaaAGACATCCCGagtggagagaaaaacacagcagggACCGCAACTCATCCCTCCACGAGGCCCATGTTATCATCCACAATGACAGCTAAGGTGACTTTTTACTATTAACTTCTCAAACATCTCAAGAGATATTGTGTCTACAAGTACAGGCCACGAACCATAACAAAATTACATCTCTGAAACAttcaagaaaaagaaggaaaacagaaaacaacattGTGCTACTAAtaagtataattaaaaaaaaaaaggactagaCTGTTTTAGTTTTAGACTGTTTTGTTACAGCCAGTTTTTAAA
>XM_026928790.2
gtgtgagagcaggaAAATGGCGGAGGCCAGTATTTTACATCATATTTCAGTAGATCAGTTCAGTTGTCCCTTGTGTCTGGATCTCCTGAAGGATCCGGTGACTATCCCCTGTGGTCACAGTTACtgtaaggtgtgtattaatgacTGCTGGGATCAGGAGGATGAGAAGGGCATctacagctgtcctcagtgcagaGACACTTTCACTCTGAGGCCTGTTATAGGCAGAAACAACATGCTggctgaagtggtggagaaaTTGAAGAAGATTGAAGTccaagctgcttctcctgctcactgttacgctggacctggagatgtggagtgtgatttcTGCACTGGGAGAAAACTCAAAGCCATCAAGTCCTGTCTGATGTGTCTGACTTCCTTTTGTGAAACTCATCTTAAACCCCATCTTGAACTTCCTGCTTTGAAAAAGCACACCTTAATCGAAGCCTCCTCAAAACTCCAGGAGAAGATCTGCTCTCAACATGACAAACTTATGGAGATCTACTGTCGTACTGACCAAAGGTGCATTTGTTCTTTGTGCATGTTGGATAATCACAAATGCCACGATGCTGTATCACTTTCAGCAGAGAGAACTGAGAAACAGAGTGAGCTAAAGAAGGAGCAGATGAAATGCCAGCAGAGaatccaggagaagcagaagaaggtgcaggagctgaaacaggcTGTGAACATGATTAAGTCCCATGCTCAGACAGCAGTGGAGGACAGTGAGATTATCTTTACTGAGATGATCAGCTTCATGGAGAAAAAGCGCTCAGAGGTGACGgagctgatcagagctcaggagaaggCTGAAGTGCGTCGAGCTGAACGACTCCTGgagcaactggagcaggagatcACTGATCTTAATAGGAGAGTCACTGAGAtggagcagctttcacacacacacgatcacatccACTTCTTCCAGagtttccggtctctctgtgtctcttctgGACGTGAGGATTCACCCAGCATCACTGTCCATCAACATCTCTCATTCGATGGAGTGAGGAATTCTCTCTCAGATCTGAAAAAGCGATTCGAGGAATTCTGCAAGAAGGAATTCAACAAAATCCCTCCACATGCTGCAGCAGTTCAGAAGATTTCACCCTCAGAGCCAACGAGCagagaagattttctgaaatatttctgtTATCTGACTCTGGATCCCAACACAGCAAATCATTACCTTCATCTGTCTGAGAAGAACAGAGTGGTGACATGCAGTCTCAAAAAGCAGCTGTACTCTGATCTTCCAGAGAAGTTCGACTCCTGTAGTCAGGTGATGTGTAAGGAGAGTTTATGTGGACGCTGTTACTGGGAAGTGGAGTGGAGAGGTGTTGTGTCCATCTCAGTCTCCTATAAAGAGATCAGGAGGAAAGGAGCGGGTAAAGAGTGTGAGTTTGGACGAAACAGTCAGTCTTGGAGTCtgtgcttttcttctttttcttcctctctctctttctatcacgACGACATGAAAACTGAGCTTGGAGTTCCATCATCCTCCagaataggagtgtatgtggatcaGAACGCAGGAAGtctgtccttctacagcgtCTCTGACACAATGAGGCTTGtccacagagtccacaccacattcactcagcctctaTACGCTGGGTTTGGGGTTTCTGGAACTGTGAGGTTGTGTGACCCAAAATAACAGTAGATGAAAAATTCTGGCTTTTTTCCTCATTGTTCCTCAGTTGTGATAAAACTATAACTTTAACGCGATAAACGTTTAAACATTGGGTTTAGACTCGGTCTGGGATCATCAGCTACACTGTTGTACagaataaaactattaaaaaggTGAACACTTTGTTTAGCTCTGCTGTGTTGAAATTACACTGTAAGTTAAAAATAACGAAACTGATCTTAGTTTGAGTGAGATTACTCCTACAGTAAAGAgtgctgtttttaattaaattgatgccacagcatctcagaaAGACATCCCGagtggagagaaaaacacagcagggACCGCAACTCATCCCTCCACGAGGCCCATGTTATCATCCACAATGACAGCTAAGGTGACTTTTTACTATTAACTTCTCAAACATCTCAAGAGATATTGTGTCTACAAGTACAGGCCACGAACCATAACAAAATTACATCTCTGAAACAttcaagaaaaagaaggaaaacagaaaacaacattGTGCTACTAAtaagtataattaaaaaaaaaaaggactagaCTGTTTTAGTTTTAGACTGTTTTGTTACAGCCAGTTTTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928789.2 True 2345 mRNA 0.44 7 2797268 2804129
XM_026928790.2 False 2273 mRNA 0.44 6 2797268 2804129

Neighbor

gene id symbol gene type direction distance location
LOC113535758 LOC108257886 coding downstream 26611 2768629 ~ 2770657 (-)
tuba8l2 tuba8l2,LOC108411703,LOC103042625,LOC107556293,LOC107750365,LOC100708793 coding downstream 29775 2758969 ~ 2767493 (-)
stk16 stk16,LOC107674016,LOC107750290,LOC107676064 coding downstream 40031 2747268 ~ 2757237 (-)
atic atic,pur9 coding downstream 68573 2718057 ~ 2728695 (-)
cpo LOC108258336,LOC108440461 coding downstream 154582 2637335 ~ 2642686 (-)
LOC113535756 LOC108258552 coding upstream 4188 2808317 ~ 2811609 (-)
LOC113535483 LOC108258552,LOC108258561 coding upstream 19864 2823993 ~ 2827600 (-)
LOC113535482 LOC108258552,LOC108258557,LOC108258559,LOC108258561 coding upstream 29484 2833613 ~ 2838789 (-)
LOC117596192 NA coding upstream 70779 2874908 ~ 2892085 (-)
gpc5a gpc5 coding upstream 278941 3083070 ~ 3170485 (-)
G370028 NA non-coding downstream 6592 2783272 ~ 2790676 (-)
G370023 LOC108257886,LOC108258553,LOC108258555,LOC108258552,LOC108258559,LOC108258557,LOC108262136,LOC108258561,LOC108275310,LOC108257788 non-coding downstream 7214 2771253 ~ 2790054 (-)
G370024 LOC108258555,LOC108258552,LOC108258557,LOC108258553,LOC108258556,LOC108258559,LOC108257788,LOC108257800 non-coding downstream 21873 2774882 ~ 2775395 (-)
G369988 NA non-coding downstream 102691 2694149 ~ 2694577 (-)
G369980 NA non-coding downstream 118998 2673555 ~ 2678270 (-)
G370019 NA non-coding upstream 14474 2818603 ~ 2821314 (-)
G370127 NA non-coding upstream 145292 2949421 ~ 2984930 (-)
LOC117596157 NA non-coding upstream 235045 3039174 ~ 3052202 (-)
G370207 NA non-coding upstream 265869 3069998 ~ 3072601 (-)
G370237 NA non-coding upstream 371015 3175144 ~ 3176945 (-)
LOC113535702 mx1 other downstream 222797 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 964539 1824204 ~ 1832729 (-)
G369586 NA other downstream 1002044 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 1185602 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 1520455 1276021 ~ 1276813 (-)
LOC117596167 NA other upstream 39083 2843212 ~ 2853211 (-)
G370658 NA other upstream 2039200 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 2584775 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 2725863 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 3137910 5942039 ~ 5952313 (-)

Expression


Co-expression Network