LOC113535483 (LOC108258552,LOC108258561)


Basic Information

Item Value
gene id LOC113535483
gene name LOC108258552,LOC108258561
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2823993 ~ 2827600 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928792.2
TTAGTATTGAAACAACTTTTTAGCATTTGAAACCATGTAGAcagagtctctctctccacccccTTTTTCTCTACTTATattagagaaaaagaaactgatCATTGAGTGTTactctctgtttctcagtgtgtgagtgcaggagCATGGCCGAAGCTTTTATCCCAGTATATCAGGATCagttcagctgtccagtgtgtCTGGATCTCCTGAAGGATCCAGTGACAACTCGTTGTGGTCACAGTTACtgtaaggtgtgtattaatggctGCTGGGATCAGGAGGTTGAGAAGGGAGTctacagctgtcctcagtgcagaGACACTTTCACTCCCAGGCCTGTTCTACTCAGAAACAACATGCTggctgaagtggtggagaaactgaagaCTGAAGTTcaagctgcttctcctgctcactgttacgctggacctggagatgtggagtgtgatttcTGCACCGGGAGAAAATATAAAGCTGTCAAGTCCTGTCTAATCTGTGTGGCTTCCTTTTGTGAAACTCACCTTAAACCTCATTTTGAACTTCCTGATTTGAAAAACCACACCTTAATCGAAGCATCCTCAAATCTCCAAGAGAAGATCTGCTCTCAACATAACAAACTGATGGAGATCTACTGTCGTACTGACCAAACGTGCATTTGTCCTTTGTGCATGTTGGAGAATCACAAAGGCCATGACGCTGTATCACTTTCAGCAGAGAGCACTGAGAAACAGAGTAAGCTAAAGGAGGAGCAGCTGAAATTCCAGCAGAGaatccaggagaagcagaagaaggtgcaggagctgaaacaggcTGTGAACATGATTAAGTCCCATGCTCAGACAGCAGTGGAGGACAGTAAGAGGATCTTTACTGAGATGATCAGCTTCATGGAGAAAAAGCACTCGGAGGTGACGgagctgatcagagctcaggagaaggCTGAAGTGAGTCGAGCTGAACGACTCCTGgagcaactggagcaggagatcACTGATCTTAagaggagagtcactgagctggagcagctttcacacacacacgatcacaaCCATTTCCTCCAGagtttcctgtctctctgtgtctattCCGGATGTGAGGATTCACCCAGCATCACTGTCCATCAACAGCTCTCATTTGATGGAGTGAGGAATTCACTCTCAGACCTGAAAAAGCGATTCGAGGAATTCTGCGAGGAGGAATTCAACAAATTCCCTCCACATGCTGCAGCAGTTCAGAAGATTTCACCCTCAGAGCCAACGAGCagagaagattttctgaaatatttctgtTATCTGACTCTGGATCCCAACACTGCAAACTGTAAACTCTGTCTATCTGAGAAGAACAGAGTGGTGACATGCAGTGTGAGAAAGCAGTGGTACTCTCATCATCCAGACAGATTCGACTCCTATAGGcaggtgttgtgtaaggagagtgtgtgtggacgctgttactgggaggtggagtggGTAGATAGTGTGCACATCTCAGTTTCATATAGAAAGAtcaggaggaaaggagagggtAAGGAGTGTCGATTTGGACTCAACAGTGAGTCCTGGACTCTGTGctgttcttcttcctctctctctttctatcacagtgacattaaaaCTGAGCTCAGAGTTCCATCATCCTCCagaataggagtgtatgtggatcacagtgcaggaaatctgtccttctacagcgtCTATGATAAGATGAGGCTCAtccacagagtccacaccacattcactcagcctctaTATGCTGGGTTTGGGCTTTACTGCAAATCAACTGTGAGGTTGTGTGACCAAAAATAAGGGTAGATGAAAAATAcctgctcatttcctcattGTTCCTCAACTGTGGTAAAACGGTCCCATCTTCAATAACGTGATGTGGGGCATGCCCACGGCAGAAAAACAGCATTCCACAGAATGTGACAGCAGAAAGAGATATGCTGTTTCAAACACACTTCCTGATGTTTTGAAAAGTTGTGTCAAGTAATGTAAGCTCACCTTTCCCTCTAGCCTGGTAATGTAGTCTCACCCTTTCCTCTAGCCTGGTAATGTAAGCTTACTCTTTCCTCTAGAATGGTAAAGTAAACTCACCCTTCCCTCTAGACTGTTAAATCAGTACAAGGAAGCAATATTCCTTTGGTTAATAGTCACTTATATTACACATATGGTACTGACacatgataaaatgtttaaatgttaaagaagTTGTACATtatataaatctgtaattttcaaaaatgtagTGTGATCAAGGCTAAGTGTTATGATGTCCATTTAGTTTGTGAACCCCTGCTCTAAAGTGACCTATGTGATTATTCAAATGAGTTTCATATAAATATGTCTAATTTTATAAACAACAATCTGATTTTCCGCCTTCAAATATTAATTCAAATCTGTCTTGAGACCAAAGTATTTACACAAAGACAATTTTCACTATCgttcattttgtttaaagtaAAGAAGAATATTTTTGTAGGTGTGAACGCTCATAGCACACTGACACAGtagattaatatttaatattagatATTTACTGAGAATTATGATCTTAACTAATGACTCAGCACTTCTTCTGTCCTTCTGTATCAACTTCTGAGAAAacaagtaattaaaaacaaatgagaaaCTGAAAGCTTCAAGCACAAAAAACAGGTTTTCCTGTGTTTCCTGCATTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928792.2 True 2682 mRNA 0.42 6 2823993 2827600

Neighbor

gene id symbol gene type direction distance location
LOC113535756 LOC108258552 coding downstream 12384 2808317 ~ 2811609 (-)
LOC113535480 LOC108258552,LOC108258561,LOC108258559 coding downstream 19864 2797268 ~ 2804129 (-)
LOC113535758 LOC108257886 coding downstream 53336 2768629 ~ 2770657 (-)
tuba8l2 tuba8l2,LOC108411703,LOC103042625,LOC107556293,LOC107750365,LOC100708793 coding downstream 56500 2758969 ~ 2767493 (-)
stk16 stk16,LOC107674016,LOC107750290,LOC107676064 coding downstream 66756 2747268 ~ 2757237 (-)
LOC113535482 LOC108258552,LOC108258557,LOC108258559,LOC108258561 coding upstream 6013 2833613 ~ 2838789 (-)
LOC117596192 NA coding upstream 47308 2874908 ~ 2892085 (-)
gpc5a gpc5 coding upstream 255470 3083070 ~ 3170485 (-)
LOC113535432 slitrk5,LOC108411062,LOC107558902,LOC107730401,LOC107677853,LOC107561275,LOC107698126 coding upstream 784119 3611719 ~ 3618120 (-)
LOC113535829 NA coding upstream 1629835 4457435 ~ 4457541 (-)
G370019 NA non-coding downstream 2679 2818603 ~ 2821314 (-)
G370028 NA non-coding downstream 33317 2783272 ~ 2790676 (-)
G370023 LOC108257886,LOC108258553,LOC108258555,LOC108258552,LOC108258559,LOC108258557,LOC108262136,LOC108258561,LOC108275310,LOC108257788 non-coding downstream 33939 2771253 ~ 2790054 (-)
G370024 LOC108258555,LOC108258552,LOC108258557,LOC108258553,LOC108258556,LOC108258559,LOC108257788,LOC108257800 non-coding downstream 48598 2774882 ~ 2775395 (-)
G369988 NA non-coding downstream 129416 2694149 ~ 2694577 (-)
G370127 NA non-coding upstream 121821 2949421 ~ 2984930 (-)
LOC117596157 NA non-coding upstream 211574 3039174 ~ 3052202 (-)
G370207 NA non-coding upstream 242398 3069998 ~ 3072601 (-)
G370237 NA non-coding upstream 347544 3175144 ~ 3176945 (-)
G370272 NA non-coding upstream 397420 3225020 ~ 3225235 (-)
LOC113535702 mx1 other downstream 249522 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 991264 1824204 ~ 1832729 (-)
G369586 NA other downstream 1028769 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 1212327 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 1547180 1276021 ~ 1276813 (-)
LOC117596167 NA other upstream 15612 2843212 ~ 2853211 (-)
G370658 NA other upstream 2015729 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 2561304 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 2702392 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 3114439 5942039 ~ 5952313 (-)

Expression


Co-expression Network