cacna1hb (LOC108258317)


Basic Information

Item Value
gene id cacna1hb
gene name LOC108258317
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1052390 ~ 1113599 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026928797.2
TTGAGCGAGTCAGCATGTTGGTGATTTTGCTCAACTGCGTCACACTCGGCATGTTCCAGCCATGTCAGGACCTGGAGTGTCACTCGGAGCGCTGCACCATCCTGCAGGCATTTGATGACTTCATCTTTGCGTTCTTTGCGGTGGAGATGGTGCTGAAGATGGTGGCTCTGGGCGTGTTCGGGCCGAGGTGTTACCTTGGAGACACGTGGAACCGCCTAGATCTCTTTATCGTCATGGCAGGaatgTTGGAGTACTCTCTCGATGGACACAACGTCAGTTTCTCTGCAATCAGAACAGTCCGAGTTCTCAGACCTCTCCGAGCCATCAACAGAGTTCCCAGTATGCGCATCCTGGTGACGCTGCTGTTGGACACATTACCGATGCTGGGAAACGTTTTGCTGCTATGCTTCTTCGTGTTTTTTATCTTCGGAATTGTTGGCGTGCAATTGTGGGCGGGGTTACTGCGCAACCGCTGCTTCCTGGATGACGATGCAAGAACGATGTTTAATCTCTCTCCGTCTTTGAGTGCTTACTACAGACCCGAAGACTCCGACGACGTCGCCTTCATCTGTTCAACCAATCGCGAGAACGGAATGCTGCGCTGCTCCGATGTCCCGCCACgcaaagtgggcggggcttactGCGAGCTAAACGCTCACAATGTCACGCACCCCGCTCCTCTAGAGCCCGCCCATAGGGGGTGTGTCAACTGGAATGCCTACTACAACAACTGCAGAGCGAGCGAACACAATCCGCACAACGGAGCCATCAACTTTGATAACATCGGATACGCGTGGATTGCCATCTTTCAgGTGATCACACTTGAAGGCTGGGTGGACATCATGTACTATGTCATGGATGCGCACTCCTTTTACAACTTCATCTAtttcatcttcctcatcatcGTGGGCTCCTTCTTCATGATCAATCTGTGCCTGGTGGTCATCGCCACGCAGTTCTCGGAAACCAAGCAGCGCGAGAACCAGCTGATGCGTGAGCAGCGAGCTCGCTTCCGGAGCAACGAGTCCACGCTGACTAGCTTGGCTGAGCCTGGCTCGTGCTACGAAGAAATTCTGAACTACCTTGGCCATCTTTTACGCAAGTTTTATCGCCAcgttattcatttttataacgACGTGTGGCGCAAGAGCAAGAGCGCTAACCTCGGGGAGTCCGCCACTGTGGGCGGAGTCAACGGACACTGGAGCAATAAGGAGGGGATTGAGCTGACCCGACACctctttcatcatcatcatcatcatcatcatcaccatcatcatcatcatcagcagcagcagcagcagcatcgcGTGGGAAATGGCACGGACGTCCCGGAAATGAAGGCGGTGCTTCTGAGCGGAGATAAATGCCTTCCCAAATACACTTCCTCGTTCCCCCTGACCGTGCACAGCCTCAAGGGTATCGGTGTGAACTACCCCACCATCCTGCCCCTGGCCTTCTTCACACACTCACGTGTTCACCCCAACTGCCCCAGTGCCCTCAAGACCAACACACGCATCCAAAACACCAACAAAACGCAGCAGCatggtgtgtaccCGGGTGTGTGTTcgagtgtgtgtacagaagcTGGCAGCAGACCGGCACCGTGCGAGCTTCCCACATGCCCGGTTTCTGCCCGCGAGGCCGACACACTCAGCTCCAACTCTGTCTGCGACTCAGACTCGGAGAAAGAGAGCGACCCGGAGCTGAAAAAAACGAGCTGGGAATCCGAGAGGAATTTCAGCGAGAAGCCGAAGAGGGAAAACTTCctcggagtgtgtgtgcggtgtgttAGAGCCGTGCTGAGGAGGATCGTGGACAGCAAGTACTTCAACAGAGGCATCATGATCGCAATCCTCATCAATACTCTCAGTATGGGAGTGGAGTACCATGaacagccTGCTGAGTTGACAGATGTGCTGGAGATCAGTAATATCgtcttcaccagcctctttgcCCTGGAGATGgtgctgaagctgctggcctgcgGTCCGCTCGGCTACATCAGCAACCCCTACAACATCTTCGACTtgatcatcgtcatcatcagTGTGTGGGAGCTCATCGGACAGGCGGATGGAGGTTTATCCGTCCTGCGCACCTTCCGTCTCCTCAGGGTCCTAAAGTTGGTCCGCTTCCTGCCAGCCCTGCGCAGGCAACTCGTGGTCCTGATGAAGACCATGGACAACGTGGCCACCTTCTGCATGCTGCTCAtgctcttcatcttcatcttcagTATCCTGGGCATGCATCTGTTCGGGTGTAAGTTCACGCTGCGTCTGGAGAACGGGGACACTATCTCGGACAGGAAGAACTTCGACTCGCTCCTTTGGGCCATCGTCACCGTGTTCCAGATACTAACACAGGAGGACTGGAATGTGGTGTTGTATAACGGCATGGCCTCCACGTCTCCGTGGGCGGCGCTTTACTTCGTCGCTCTCATGACCTTCGGTAATTACGTCCTCTTCAACCTGCTGGTGGCCATTTTGGTGGAAGGTTTCCAGGCTGAGggcGATGCTAGCAGATCAGAAAGCGACGATGATGCGTTCTCATCTGACTTTGACGACGAGGACAGGTTGAGAGAGCTGTTAAGCTCAGGTTCGGAGGCGAAGGTGCAGACGCTCCTGCCCATTTCTAACGGCCACTTGGAGCCCAGAGCCACCATGCCGCCGTACCACGCCTACACTACGGCCACGCCCAGAACCGAAGTGTCTCACGTCGACAACCAATCACTGCGCAGCAGCAACGCCTCCTACGAGCACCACGACCAGAAGTCGATGTCCAGTCTATGGGGGAGTCGCCGCTCTAGCTGGAACAGCCTCGGCCACGCCCCTAGCTTGAAGAGGCGTGGCCAATCAGGAGAGCATGAGTCGCTGCTATCGGGCGAAGACCGGGACAGTTTCGAAGACGACCAATCAGAGGAGGACAAGTCCAGCAGGACAGGCAGCTTGAGCAGAGTTTCGCATCTTGAGTCGTTCGATTTGCCAGAACTCCTACAAGTCCCGCCCATGCCACACCTCTACGGAGAATGCAACGGTAGATTGGACGGATCGTTTCCTTCCTCTCCGTACACAACGCAACGAGAGACGTCGCACGCACCTGCCGAGCAGGACGACGAGTCAGAAGAGAGTTGGTGTGTTATTCTGAAAAGGATATTGGAGCCGTACAAGCCTCAGTGGTGCAGAGATCACGAGGACTGGTCACTGTACGTGTTCTCACCTCAAAATAAGTTCCGTGTGCGTTGTCAGAAGGTCatcactcacaggatgtttgaTCACATCGTGCTGGTCTTCATCTTCCTCAACTGCATCACCATTGCGCTCGAGAGACCCGACATCCAGCCACACAGCATGgAGCGCGTCTTTCTCAGTGTGTCTAACTACATCTTTACTGTGATCTTCGTAGCTGAGATGACTGTCAAgGTGGTGGCCATGGGGCTGTACGTGGGTCCAGGCTCGTATCTGCAAAGCAGCTGGAATGTTCTGGATGGGCTGCTGGTGTTCGTGTCTATCGTGGATATCCTGGTGTCTCTGGCCTCATCTGGAGGAAACCGCATTTTGGGAATCTTGCGAGTACTGCGTCTTCTCCGAACGCTCAGACCGCTCAGggtgatAAGTAGGGCTCCTGGTTTAAAGCTGGTGGTTGAAACACTAATAACTTCACTGCGGCCGATTGGGAATATTGTGCTGATCTGCTGTGCTTTCTTCATCGTGTTTGGAATACTGGGAgtccagCTCTTCAAGGGAAAGTTTTATCACTGTGAAGGCTTCGACACCAGAAACATCACCAACAAGTCCGAGTGTCTGCAGGCGAATTACCGCTGGGTTCGCAGGAAGTACAACTTTGACAACTTGGGCCAGGCCTTGATGTCATTGTTTGTCCTGTCATCCAAAGACGGCTGGGTCAACATCATGTATGATGGATTAGACGCAGTGGCTGTGGAccaacagccCATAAGGAACCATAACCCCTGGATGCTGCTCTACTTCATTTCCTTCCTGCTGATCGTCAGCTTCTTCGTGCTGAACATGTTTGTGGGCgttgtggtggaaaacttccACAAATGCCGTCAGGaccaggaggaggaggaggcacgCCTCAGGGAGGAGAAGAGGCAGAGACGGCTGGAGAAGAGGCGcagaaaggcCCTCCAGAGACCGTATTATGCAGACTACTCTCCCGCCCGCCTCTACATCCACACCCTCTGCACCAACCACTATCTAGAcctcttcatcaccatcatcatcggCATCAACGTCCTCACCATGTCCATGGAGCACTACAACCAGCCCAagTATCTGGAGGAATCCCTGAAATACTGCAACTACGTCTTCACGCTGGTGTTTGTGATCGAGGCCATGCTCAAGCTGGTCGCCTTCGGCTTCAGGAGGTTCTTCAAAGACAGgtggaaTCAGCTGGACTTGGCCATTGTTCTGTTGTCCGTTATGGGAATTACGCTGGAGGAGATTGACCTGAATGCCTCATTACCCATTAACCCAACTATCATTCGCATTATGAGAGTGTTGCGCATCGCCCGAGTGTTGAAGCTGCTCAAGATGGCCACGGGAATGAGAGCGCTGCTGGACACGGTGGTCCAGGCTTTACCGCAGgttgGAAATCTGGGGCTTCTTTTCATGCTGCTGTTCTTCATCTACGCTGCTCTGGGAGTGGAGCTGTTCGGAAAACTCGaatgCTCGGAGGAAAACCCGTGTGAGGGTCTGAGTCGACACGCTACCTTCGAGAACTTCGGCATGGCGTTCCTCACCCTGTTCCGAGTCTCTACCGGGGACAACTGGAATGGAATCATGAAGgaCACACTGAGGGAGTGTAAGAGTGGAGATCGCTGCTTGAGTTACCTGCCGCTGTTTTCCCCGCTGTATTTCGTGACGTTCGTGCTGGTGGCGCAGTTCGTCCTGGTGAACGTGGTGGTCGCCGTGCTCATGAAGCACTTAGAGGACAGCAACAAGGATGCCTGCGAGGAGGCGGAGATGGAGGCGGAGCTGGAGGCGGAGCTACAGGCAAATCGGTGGCAGAATGCCGCCGCGTCTGCTGGTGAGGTTACTGGGTCTCCTGCGCTTCTACAGGGTGACGACCTTCAGGACAGAAACCTGCTCTCGGTCGGGAAGCCGTGCATATCGAGAATGCTGTCTTTACCAAACGACAGCTACATGTTTTACCCTAAAGCTGGACACAAACCCAGAGAGCAGCTCTTCTGCAAACAGCAGACCGTCGATCACAATACAGTCACAGGCTCGTCTCTGTCAGTGAAGTCGGAGTTGTGTGAATGGGAATCCCTACTGCAGGTTCCAGAGCCTCCGACTGGCCCCGCCTCTCATTTAGAGCCCCTCCCACCGCATCATGTGACCACACAAAAGTCTCTCAGGATGCTCCAAAGACAGGAGGCGATAAAGAGCGACTCTGTGGATTCCACCAGCCCTGGATCGATGGACAACTTATTTCTGCTCCACTCCGATTCTCTCAAAGTTCCCAGCGTTCCTTTGACCGGAGGCTCCGCCCCTTGTTCACCTCGAGCCACGCCCCCTATGTGTCGCAGTCGGACAGCCAGCGTCCAAACAAGCAGACGCGTGTACAGCCAGCGCAGCATTCCTTCACGcaggtctacacacacacagccggacacacacacacacacgtctaacacacacacctcggaCGAAGAAATCAGACAAATCCTATCATCCGTCGAGAGAAAAGACTCCGGTGTCCGGCTCCTCAGACGCAGCCACACCTTATCTCCACATGTCGCAGGCACTTTATGTTTGAAAAGCCAATCACAGCGAAGTAAAAGTACAGGAAGTGACCTTAGGAAGTACAACAGCATGGACTCGACCCATGGGGCGTGGTCAAACCAGCCGCGAAACAAGAGCGTGCCCTTTAAAACGCAAGGATCAGAAGCGTCTCTGTTGCGCAGGAAGCACAAAACGAGTCCACCTTGCGTTTCGCCTTCCACAGACCCGCCCATTTTCTCAGAAACTTCTCAGAGCGGCGTGGTTCTGAAAAGGCGGGCGCCATCGTTTGACTCCACGCTGCTCCGGGAGTCTTTGGATCTTCCTGATTCTCTGCTAGTTGCTAAGCCCCTCCCAcaacctcatttatcaatccatctgtctgtcccgTTTGAGCAATCGAACAATCGCGTTTCAGACGACGACCAATCATCACACTGTGTCCCAAACGACGCCTAAACAGAGGGTTATGGACCCGTTATGGGCGTGGCTTATTGTTATGGGTCGGGATGGTTCGTTCAGCCAATGAGGATTCAGACCAAAACATTTGATGCTAATGTGCACCTTTAAGCTAggaattctaaaaaaaaaaaaaaaaaaaaaagtaaaaaaaagaaaacagtaggGTGAAAATGAGTTATgcaattgtttgtttgtttgttttttccctaaTCATATTGATTAGAGATTtgagaatataaaaaatgatattGTGCAGCTGGATATTTGTTCTGAACTATAACAAAGCTCCCAGTAGCTCCCTACCCTACGTTCACACAAGCCCATGacaagtgggcgtggcctttaGTTCCTATGAGAAAtggtagtagctatatataacttctaaagctagctagttaatcGGTGTGAAAATcatttgtttgatttacatgttatgcGCTCGGCTTTGTACTAGCTTTGTTCTCGCTAACTatactagctacgtacacttACTAGAGGCACCAACAAACTCtgctccttccttccttttctagCATCGTactagctttatttttcttcgtaatgttTCTATACACGTTAAATAAGAGGATGGATATGAGAGGATAAGATGAAACTGGAGCACATCGCAAGTAGACGATTAAGTTGTGAGTGGGAAACTGAATCAGACTGGTCCGAGGAATCAATCCGgacaatcgtttggatttgtcgctttatcTAATTTGCgtaaaaaattaagaaatcgCATTTCAAAAGTCGCTTTGTTGCTGAAATCGCAGCTTCGCGTCACGTAGAAAACGGAAAACGCTCACCTGTCATTTTGTCGCTCGCTATTGTGAACGTAGGGTTACAATCACTTCATGGCAaatttctaaaatattagaatagTCATGAATCAGTTGTAATAGACACTTGTGTATTAGTATGGTGTCAATGGTTGTTATGGAAACCggatggaagaagaagaagaacgcAGATGAAGGTACGAGATCCTGAATACACTTTTTTGACGAGAAAGTCAGATACGTTTTTCTAAAACAGAGCAATGTTGACACACCTGTTTTTCTCAGATGAAATCTCAAACACACTGCATGGCAGAATCATCAGGACTGTACGCAGGAGGGCGGAGTTACTCTAGACTCGACAgagttaatatatttattgaatGCAGCACcatgatatttttataaaaaaaaagcccaagaGTTTTGCACGCACTCAAATGTTTTTTGacaaggaaatgtttttttttgttgttgttgttgttgttgttgttggttttctCTTGGTAATAACCATTTCTACAAAATATATTCAACCAAACACGCTTctgataattttattttttcccctcgtGCCACCCAGAGATTCTGAAGCAtggcataaataataataataattattatttattattaattattattattattattttccatagATTAGTTAATAGAGTAATGAACATTTCACCCAGAACAGATGTTCAGTGGCCTGTAAGTGCAAAACACgttaacaaaaatacaacaacaaactCGAAAACACATCAGCAGTAACCAGGTCCTTATTGAACGTCACGGGcttgttgttgtgttttgattttgccgtcatgttttttgttttgttgtgtttacaAATTTACTGTTAGTTTTTT

Function

NR:

description
PREDICTED: voltage-dependent T-type calcium channel subunit alpha-1H-like

GO: NA

KEGG:

id description
K04854 CACNA1G, CAV3.1; voltage-dependent calcium channel T type alpha-1G

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026928797.2 True 7857 mRNA 0.50 33 1052390 1113599

Neighbor

gene id symbol gene type direction distance location
myo15ab LOC108258396,LOC107725350,LOC107692700,LOC108441473,LOC108439093 coding downstream 26369 987755 ~ 1026021 (-)
alkbh5 alkbh5 coding downstream 65820 980870 ~ 986570 (-)
mief2 mief2,LOC108258856,LOC107722977,LOC107725398 coding downstream 73158 970792 ~ 979232 (-)
smcr8b LOC108258855 coding downstream 82773 963855 ~ 969617 (-)
fscn1b LOC108258690 coding downstream 149901 897224 ~ 902489 (-)
LOC113535776 LOC108258401 coding upstream 54029 1167628 ~ 1190548 (-)
slc5a10 slc5a10 coding upstream 91165 1204764 ~ 1246041 (-)
LOC113535431 LOC108258373 coding upstream 242124 1355723 ~ 1365906 (-)
en1b en1,eng1b,LOC108258368,LOC108437127,LOC102785987,LOC103355596 coding upstream 398722 1512321 ~ 1518371 (-)
pard3ba pard3b coding upstream 505221 1618820 ~ 1738935 (-)
G369130 NA non-coding downstream 177187 871589 ~ 875203 (-)
G368944 NA non-coding downstream 351102 701084 ~ 701288 (-)
G368912 NA non-coding downstream 379360 671640 ~ 673030 (-)
G368903 NA non-coding downstream 470530 578593 ~ 581860 (-)
G368725 NA non-coding downstream 770487 281439 ~ 281903 (-)
LOC117596193 NA non-coding upstream 153107 1266706 ~ 1270425 (-)
G369243 LOC108258881,LOC108261507 non-coding upstream 163474 1277073 ~ 1277650 (-)
G369298 NA non-coding upstream 251764 1365363 ~ 1375213 (-)
G369297 NA non-coding upstream 256535 1370134 ~ 1396598 (-)
G369302 NA non-coding upstream 271322 1384921 ~ 1385662 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other downstream 103587 869759 ~ 948803 (-)
G369125 actb other downstream 136707 911553 ~ 915683 (-)
prkcba prkcb other downstream 350045 653453 ~ 702345 (-)
rasd3 LOC108258668 other downstream 459795 591136 ~ 592595 (-)
pmm2 pmm2,LOC107692644,LOC101469678,LOC102299325,LOC100707130,LOC102200931,LOC107082664 other downstream 762482 284863 ~ 289908 (-)
G369242 LOC108258881 other upstream 162422 1276021 ~ 1276813 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other upstream 424854 1538453 ~ 1611666 (-)
G369586 NA other upstream 662720 1776319 ~ 1795224 (-)
mdh1b mdh1b other upstream 710605 1824204 ~ 1832729 (-)
LOC113535702 mx1 other upstream 1453158 2566757 ~ 2574471 (-)

Expression


Co-expression Network