LOC113535598 (LOC108258873)


Basic Information

Item Value
gene id LOC113535598
gene name LOC108258873
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2282791 ~ 2331670 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929032.2
TGAGTGCAGTTTTAGCAGCGCGGCTAACAGCCAAAAAACGCGGACGCAGAGTTAGGACATGAGGACATGACGAAGAGAAATAAACTCATATTCACTCCCAGGACAGATTTACACCGAGGATTCATTCTCAACATGTGAATTTATGGAGATaaggagggaaaaaatgaaGGCGCCTCGtcttgttcagtgttttgttCTGGCGGTTGCTGTCATCCGGACGAGTCGCGCGCAGGCAGtgtgtgagggCACCGATAACAAGCTCAGCACCCTGTCAGATTTGGACCAGCACTACCACACTCTGCGCAATTTCTACGAGAACTGTGAGGTGGTGATGGGAAACCTGGAGATCACCAGCATCGAGCGGAACCGCAACCTCAACTTTCTTAAGTCGATCCGAGAGGTGACTGGTTACGTCCTGGTGGCTCTGAACCAGTTCGACTATCTGCCTCTGGAGAACCTGCGTATCATCCGCGGTGCCAAACTGTACGAAGGCCGTTATGCTCTGGCCATCTTCCTCAACTACAGGAGAGACGAATACTTCGGTCTGCGCCAACTCGGATTCAACAACCTCACCGAGATCCTGAACGGCGGTGTGTATGTGGATCAGAACAAGTTCCTGTGCCATGCGGACACCATCCACTGGCGGGACATCATGAGGAACCCTCACGCCGAGCTGCTGGTGGTGCCGTCCAACAACAGCGGCTATTCATGCAGACGATGCCATCGATCCTGTAATGGACGCTGTTGGGGACACCAAGAGAATCAGTGCCAAATCTtaacgAAGACGGTGTGCGCTGATCAGTGTGACAGTCGCTGTTTCAGTCCATTCGTCAGTGACTGCTGTCACCGCGAGTGTGCTGGAGGCTGTTCAGGACCCAAACACACCGACTGCTTCGCTTGCACTAACTTTAATGACAGCGGCGCTTGTGTGACTCAGTGTCCTCAACCTTTCATCTACAACCCAACAACCTTCCAGCTGGAGCACAATCCCAAAGTCAGATACACGTACGGAGCATTCTGCGTCAAGAAATGTCCACATAACTTTGTGGTGGATCACAGCTCCTGTGTTCGAGCCTGCCCAAGTAACAagatggaggtggaggaaaACCACGTCAGGATGTGTGTCCCCTGTACTGATATCTGTCCTAAAGtgtgtgatggaataGGGACGGGCAGTTTACACACGGCCCAGACCGTGGACTCCAGCAACATCGACAAGTTCATCAACTGCACCAAAATCAACGGCAACCTGATTTTCCTCATCACTGGAATCAAAGGAGACATGTACCACGGCATCAGAGCTTTGGACCCTGAGAGACTCAGTGTGTTCCTCACAGTTAAAGAGATCACAGGTTTCTTGAACATCCAGTCATGGCCGGAGAACATGACAGACTTCAGCGTGTTCTCCAACCTCAGCATCATTGGAGGACGAACTCTTTACAGTGGCGTCTCTCTGCTGATCCTGAAGCAGCGCTGGATCACATCCCTGAGCTTCCAGTCTCTGCAGGAGATCAGCGCCGGGAACGTTTACATCAGCAACAACAGCCAGCTGTGTTTCTATCACACGCTGAACTGGACGAGGTTTTTCCGCTCCAGCAGTCAGAGAGCTCTGCTGAACAACAACAAGGACACGCAACAGTGCAttaCAGAGCAGCATGTGTGTGATAAGCTGTGTTCAGAAGCAGGATGTTGGGGTCCCGGTCTTGACCAGTGTGTGTCCTGTAGGCACTACAGTCGCGGGAGGACGTGTGTGAAGTCGTGCAACCTGTACCACGGagaattCCGGGAGTTCATCAACGGATCAGCGTGTGTGGCGTGCGACAGCCAGTGTGAGAAATCCGGAGATAAAACACTGACCTGTCACGGACCAgGTGCAGATcagtgtatgaagtgtgttCATGTGAAAGACGGGCCCAGCTGCGTGGAGAAATGTCCTGATGGGCTGCAGGGTGCCGACAGCTTCATCTTCAAATACGCCCACAGCAACAACGAGTGCAGACCCTGCCACACCCACTGCACCCGGGGatgcACTGGACCTCGGATTCAAGACTGCATTGGAATGATGGACAGGACTCCTCTGATTGCAGCCGGAGTGATCGGGATGATGTTTGTGCTCGTGATTGTGGCGCTCGgttttgctgtttatttcagACGCAAGAGCATCAAGAAGAAGAGAGTGTTACGGCGCTTTCTGGAATCAGAGCTCCTGGAGCCTCTTAAAGCCAGTGGAACAGCACTGAATCAGGCTCAGCTGCGCTTACTGAAGGAAACTGAACTCAAGAAGGTTAAAATCCTGGGATCTGGAACCTTCAGTACTGTTTACAAGGGCATCTGGATACCTGAAGGTGaaagtgtgaaaatcccagtgGCCGTAAAAGTCCTCACTGAAACCACAGAACCAAAATCCAACGCAAAGTTTCTGGATgaGGCTGTGATGGTGTCCAGCATGGATCACCCACACCTGCTGCGTCTGCTCGGGGTGTGTGTGAGCCCGAACGTGCAGCTGGTGACCCAGTTCATGCCCCACGGCTGCCTGCTGGATTACGTTCACGAGCACAAGGACAACGTCGGCTCTCAACTGCTGCTCAACTGGTGTGTGCAGATCGCCAAGGGTATGATGTACTTGGAGGAGAGAAGGCTGGTCCATAGAAACTTGTCTGCTTGTAATGTTATGGTGAAATCCCCAAACCACATCAAGATCACCGACTTTGGGCTTGCTCAGCTTCTGGGTGCTGATGTGAAGGAGTACAGTAATGATGAAGACAAGATGCTCATCAAGTGGATGGCATTGGAGTGTATTCACTACAGAAAGTTTACCCACCAAAGTGACGTTTGGAGTTATGGAGTGACTGTCTGGGAGCTGATGACCTTCGGAGGAAAGCCGTATGATGGCATTCCCAATCGTGAGATCCCGGATATTCTGGAGAAAGGAGAACGTCTGGCTCAACCTCTTATATGCACCATAGATGTCTACATGGTCATGGTCAAATGTTGGATGATCGATGCTGACAGTCGTCCCAGGTTTAAAGAGCTCGCTACAGAGTTCTGCAGGATGGCAAGAGACCCTCAGAGATACCTAGTCATCCAGGGGGATGACAGCATGAAGCTGCCCAGTCCCAGCCACAGTAAATTCTTCCACAGTCTTTTGGATGAGGACGAACTCGGAGATGTGATGGATGCTGAGGAGTACCTGGTTCCTCACAACCTCaattctcctgtttcctcccatcCATCCAGCCCTCATCTGGATTCCAATCAGGGACTGAGCGATGCGACAATAGGAACACAGAGTTGTGAGGCAGCCACGTCGTCTGGTGAACTGTTTTTCCCAGTGAGGCCTGGGAAGGAGGAGCAGCTCTGTCATGGAAGGCTGAAGAAGAAGCTCAGCACTGCCTTTGTGGAGGACAGCAGCTGTCGACGCTACACTACAGATCCTGCTGCATTCCTGAAAGAAAGAACCCAGAGGAGAAGTGCTGATGAGGATCGTTGTATTGCCGCCAAGAATGACAAGAGTTCCTCAGACCCTATTGAGGAGAATCCTTTCATCACACaccagaaaaacagagagattcATGCACTGGACAACCCAGGTTACCATGGCAATCCTGACGGACAGCTCAAGATTGAGGATGAGAACATCAACAGTCCTCTAGACCACAACACAGATGAGATGATCCAAGAGACACTGAAGAAGAGCGGGGTTTCTCTTCCTCTGCTGTCCAGAACAACAAGCAGGACTACAAATAGCTATGTAAACCTCAGCACTCAAACAGAGAGACCCCATGTTCATTTTACACTTCCACCAGTTCAGCCTCCTCAAAGTGGACCAATGAGTCAAAATGGCCACCATCTCCATTCAGGTCACGGTCTATGTACTGATCATCCCAGTAAGTGTGTCCTTCCTTCAGTAACAGGACAAATATGTCACATCAGCCACCAAATCCAGCCTGGTTCTCCTGGTGCTGCTCACGTCTCACACCAACACGATGGTGTTAAAAGTAGCACCACTGCTCTACCAGGTCATGTGATCCATCAAAGCAGCACAACACAAACAGTTGGAACAAACAAGAAGTCCTTTCACACAAACAATCCAGAGAAGTGGCATCACAGCCTTCCAGCCAGTGTTCCACAGCATCCTCCAGATCCTTCGCTGGTCTGCAGGAACAGTTTCATCTACAAGCAGAATGGCCGTGAGAACCCAGAGAACCCTTCAGAGTCCAGCATGAAGCCAAGAACATTTCTGCCTCCGCCACCATACAGGCACAGAAACACTGTAGTGTAGCATCTCAATCATCCATGTTCCTCAGAGACTGCTTCTTCTACCAGCACGTTAAAGATATTACTTTCTTCCTCGGCAGTTCCTGGAACTCACCTGCCAGAACGTTTCATGCTCTTAAGAGAAGAAATAGTGTATTCCTCAGCATCATCCCATAatatattgtatactgtatatgtatatatatccaAACGACTGAGAGAACAAAGTGTACCTTTCAGACTTTTGTACCTCTCCTTCATCCTGTGTGTGGGTAACATTAAAACTTTGTAAATTCTGGAAGATATCGGAGActtttatagtatattttttagaaaactGAAGGCACCGGATTGTTTACACATCAATCttatataataaaaagtaataaaagtacctggaaatatattttttcgTGCTATGTGAGAACGCGTGTGCTGTTCTGAGGCAGCAAAGCCTTAATCAAGAGGCTGGTTAATCCTCCCTGACTCACTCGTggatgttatttaataaaaatgtagagCTCTGAGACATTTCCAAGGCAGAATTGTGAATACTGAGAACGTCTCGCCCTTGGCTTTTTAAAAGGATAATAATTGAATGTTTTCCCTCTCAGTGTTGTAAGTCTATGTTTaacatgctgtattattccTGGTTGTGGACTGGCACAGTGTCTTTTATGATGTATATTTTTGGATTATGATCATTACACAATAAAATGATTACGGTTTAAATGAAACTA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG:

id description
K04361 EGFR, ERBB1; epidermal growth factor receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929032.2 True 4997 mRNA 0.49 27 2282791 2331670

Neighbor

gene id symbol gene type direction distance location
LOC113535651 NA coding downstream 11138 2261289 ~ 2271653 (-)
LOC117596168 NA coding downstream 23643 2256421 ~ 2259148 (-)
klf7a LOC108258322 coding downstream 345716 1915663 ~ 1937075 (-)
LOC113535707 LOC108258365,LOC108437114 coding downstream 373417 1895048 ~ 1909374 (-)
pard3ba pard3b coding downstream 543856 1618820 ~ 1738935 (-)
LOC113535761 NA coding upstream 15558 2347228 ~ 2350989 (-)
LOC113535442 LOC108258868,LOC108258869 coding upstream 169360 2501030 ~ 2515018 (-)
LOC113535562 LOC108258657 coding upstream 191445 2523115 ~ 2542866 (-)
LOC113535812 mx1 coding upstream 243780 2575450 ~ 2583050 (-)
efnb2b LOC108259076 coding upstream 285956 2617626 ~ 2633096 (-)
LOC117596129 NA non-coding downstream 37633 2199025 ~ 2245158 (-)
LOC117596130 NA non-coding downstream 94849 2186646 ~ 2187942 (-)
LOC117596194 NA non-coding downstream 138340 2115578 ~ 2144451 (-)
G369663 NA non-coding downstream 261476 2018715 ~ 2021315 (-)
G369641 NA non-coding downstream 393417 1888504 ~ 1889374 (-)
LOC113535806 NA non-coding upstream 11443 2343113 ~ 2345533 (-)
G369891 NA non-coding upstream 179086 2510756 ~ 2510962 (-)
G369907 NA non-coding upstream 188828 2520498 ~ 2522127 (-)
G369924 LOC107702554 non-coding upstream 224309 2555979 ~ 2558809 (-)
G369926 NA non-coding upstream 227543 2559213 ~ 2560060 (-)
mdh1b mdh1b other downstream 450062 1824204 ~ 1832729 (-)
G369586 NA other downstream 487567 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 671125 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 1005978 1276021 ~ 1276813 (-)
G369125 actb other downstream 1367108 911553 ~ 915683 (-)
LOC113535702 mx1 other upstream 235087 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 511542 2843212 ~ 2853211 (-)
G370658 NA other upstream 2511659 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 3057234 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 3198322 5529992 ~ 5547032 (-)

Expression


Co-expression Network