cpo (LOC108258336,LOC108440461)


Basic Information

Item Value
gene id cpo
gene name LOC108258336,LOC108440461
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2637335 ~ 2642686 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929079.2
CTGGATATATATAATCGGCTGTAACAGTAACTGCATGCAGATTCCTTGAGTCCTTCGAGCAACATGTTGGGGTCGGTTTTAGCCGTTCTGCTCATTTTAACCCTGCAAACCCATGACAGGGCAGTGGAGGGACTGGAGCAGTGGGCTTATGACTACACCAAGTACCACACCATGGATGAgATCTCGGAGTGGATGAAGACGATGGAGAGGGATTATCCTGACGTTGTTAGCAGCATCATCTATGGAAACACGTATGAAAAGAGGAACATCACACTGCTGAAGATCGGACTGAGCAGCACCGACCCGAAGAAGATGATCTGGATGGACTGCGGGATTCACGCTCGAGAATGGATCGCTCCAGCTTTCTGCCAGCACTTTGTGAAGGAGATCCTGGGCTCCTACAAAACAGACCCAAAGATCGACGAGATGTTGAGACATTTGGACTTCTACATCACCCCAGTGCTGAACATGGACGGATATGTGTACTCATGGAAAGACAACACGACACGGTTATGGAGGAAGACAAGGTCACCTGGAACTGATACGTGCACATGTTTTGGCACGGATCTCAACCGCAACTTCTATGCTAACTGGGGAATGGTGGGCAtttccagaaactgctgctcGGAGATCTATAACGGACTGTCTCCTCTTTCGGAACCCGAGGCCCAGGCGGTGACAGACTTCCTGAGCGCCAATCGAGACAACATCCTCTGCTTCCTCACCATCCATTCGTATGGCCAGCTGATCCTGCTGCCTTACGGGCACCCCAACATCACCGCCCCCAATCAAGACGAGCTGatgaaaGTGGGTCTGGCTGCAGCAGAGGCCATTAAAGCTGTTCACGGAATGGACTACACAGTGGGAACGCCTCCTAAAGTGCTGTACCCCAATTCGGGCTCGTCTCGTGACTTTGCGCGTCTCATCGGCATCCCGTTCTCCTTCACGTTCGAGCTGCGTGATAAGGGCCAGTACGGCTTCTTGCTGCCGGAGGACCAGATCCAGCCCACGTGTGAGGAGGCGTATCAGGGCGCGCTGTCCATCATCACGTACATCCACGATAAATCCTACGTCCGTGCGGCGGCTTCGAGCATCGCAGCTACACTATGGAGCATTGTCCTAGCTGTGTGGCTCTCTTGCGCCACCGTCTGACCTCTTACCTGAACTGAAATCATTCACACAGGTTAAATAACCtggtttattatattattatctccCCAGTTACTCCATAATGGCTCTCTGTCATTATTCAGGTATTATACCCAACACTCTGGACTTACAGTGTAAATGGTGCAGTTTTGTCTGAAATGAATTATCACACAATTTTTAGAGGTCTGTgtgaattttgactttttttccaataacaataTGGCGAACATTTGGAAATTATTTtccataatattataataaaagaaagCTCCCTTAGATATGA

Function

NR:

description
PREDICTED: carboxypeptidase O-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23009 CPO; carboxypeptidase O

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929079.2 True 1432 mRNA 0.49 9 2637335 2642686

Neighbor

gene id symbol gene type direction distance location
efnb2b LOC108259076 coding downstream 4239 2617626 ~ 2633096 (-)
LOC113535812 mx1 coding downstream 54285 2575450 ~ 2583050 (-)
LOC113535562 LOC108258657 coding downstream 94469 2523115 ~ 2542866 (-)
LOC113535442 LOC108258868,LOC108258869 coding downstream 122317 2501030 ~ 2515018 (-)
LOC113535761 NA coding downstream 286346 2347228 ~ 2350989 (-)
atic atic,pur9 coding upstream 75371 2718057 ~ 2728695 (-)
stk16 stk16,LOC107674016,LOC107750290,LOC107676064 coding upstream 104582 2747268 ~ 2757237 (-)
tuba8l2 tuba8l2,LOC108411703,LOC103042625,LOC107556293,LOC107750365,LOC100708793 coding upstream 116283 2758969 ~ 2767493 (-)
LOC113535758 LOC108257886 coding upstream 125943 2768629 ~ 2770657 (-)
LOC113535480 LOC108258552,LOC108258561,LOC108258559 coding upstream 154582 2797268 ~ 2804129 (-)
G369927 NA non-coding downstream 72083 2564712 ~ 2565252 (-)
G369930 NA non-coding downstream 73798 2562804 ~ 2563537 (-)
G369928 pcnp non-coding downstream 74877 2560880 ~ 2562458 (-)
G369926 NA non-coding downstream 77275 2559213 ~ 2560060 (-)
G369924 LOC107702554 non-coding downstream 78526 2555979 ~ 2558809 (-)
G369980 NA non-coding upstream 30869 2673555 ~ 2678270 (-)
G369988 NA non-coding upstream 51463 2694149 ~ 2694577 (-)
G370023 LOC108257886,LOC108258553,LOC108258555,LOC108258552,LOC108258559,LOC108258557,LOC108262136,LOC108258561,LOC108275310,LOC108257788 non-coding upstream 128567 2771253 ~ 2790054 (-)
G370024 LOC108258555,LOC108258552,LOC108258557,LOC108258553,LOC108258556,LOC108258559,LOC108257788,LOC108257800 non-coding upstream 132196 2774882 ~ 2775395 (-)
G370028 NA non-coding upstream 140586 2783272 ~ 2790676 (-)
LOC113535702 mx1 other downstream 62864 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 804606 1824204 ~ 1832729 (-)
G369586 NA other downstream 842111 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 1025669 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 1360522 1276021 ~ 1276813 (-)
LOC117596167 NA other upstream 200526 2843212 ~ 2853211 (-)
G370658 NA other upstream 2200643 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 2746218 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 2887306 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 3299353 5942039 ~ 5952313 (-)

Expression


Co-expression Network