knstrn (knstrn)


Basic Information

Item Value
gene id knstrn
gene name knstrn
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 4619201 ~ 4627241 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929095.2
CGGGCACGCCCCCAACGTTACCGAATACTACCGAAGAAGAAGTTGACGGAAGTGACGCAAATATTTTGAACGTTTACCGCGCTGAAAGTCTTGAAGTCAAGTGTATTTCTTGTGCGCTATAAGAGCAGGAACTTGGATTAGTTTAACACAATCTTTCTGCGGCACTATGAAGAGAGTGGACAGAGCTCCAGTTAAAGATACAGCAATTCCCACGCATCCTAATATAACATCTAAGAAAGCAAACGTCAGGACTGACACTGAGACTATGAGCAGGAAGAACCCAGCAAAAAGTCTTAAAGGGCCCTCAGTAAGATACGGCCACCAAAGTGATGTGAAGGAACAAAACCGTCTTTTGGTGGGAGCGAATGAAGATTTGCAGAAACAGATTTCAGACCTGAAGgAAAATGTGTCTATATTAGAACAACGCTGCAGCAATCTTCAAGAAAACAACACTGACCTTAAGAAACAGCTCAGCGACTGTCACGTACTTCTCATTGCAGAAAACCTTGATCCAgTTTCAGGGGAGAAAGTTGGTGAAACAGCAAAACAGAGGGCAGGACAAAGAAAAGAAGTCatgACCATTTCCCAAAAACTTCTGACTGAGCTAAAGCTGTTTGACGATTTTACAAACGAGCACAGAACACATTTAACGGAGGTGCAGAACACCATGAGAAGTCTTAAAGAAGCCAGAGAAAAGCTTCACCTGGAAAGAGAATCATTTTGCACGTATGCTGAGGACATGGAGAGAGCACTTGAGGATGCAGAGAGGCTGCTGGTagaataaaaacacagtaaaaatacagaaggattttttttggttttggttttaaCAAATTTTCTGGGCTATGTTtgctgattttaaataaaaaagtactgAAATAGATTAAGCTTGTCTTAGTAATAGTATCTCAGTATCCATCCTCCAACACCTCCccctcaataaataaacaaaaataaataaataaaaggtttttgcGTAGTCTCTGTGGGGAAACGGATAAAGGTTTCTGTGTAGAACGCTACAACAACTGAATTAAAGATGGTTATTTTCAACCATGAGGGAGTCCGTGTTTACGCAGATAATCACTAGAGATGAACTCTTTGAGGTTTTGTGGTTTTATAAGAggattcatatttttttctctaatccAGGGCCGGCTCGTGTCAGAGGGCTAGCAGGGCCAAGCATTAATGCTGCCAGACAAACTTTCTTACATAAAATTCAGTTCTTTTAAAGCATTGCAtgttttcagtgctttttttttgttttgttttgttgttccaGAAGGTTTATGTATAATTCCAAGTCATTTATAAAATTTGCTTTACAAAGACCCCATTTCTTGTCGTGTATACGGTATTTacccaataaaataaataactgcacAATGTATTGTTGTTTATATTCCAACATGTCATTTTGAATATACAAAAGCACATCAAGAACACAAATTTTCTATTGTACATCCCAGTTTTCTATAAATACTAAGCTTCT

Function

symbol description
knstrn Predicted to be involved in mitotic sister chromatid segregation; regulation of attachment of spindle microtubules to kinetochore; and spindle organization. Predicted to act upstream of or within chromosome segregation. Predicted to be active in kinetochore and microtubule cytoskeleton. Human ortholog(s) of this gene implicated in actinic keratosis and skin squamous cell carcinoma. Orthologous to human KNSTRN (kinetochore localized astrin (SPAG5) binding protein).

NR:

description
tropomyosin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929095.2 True 1495 mRNA 0.38 8 4619201 4627241

Neighbor

gene id symbol gene type direction distance location
cfap221 cfap221 coding downstream 393 4596430 ~ 4618808 (-)
LOC117596183 NA coding downstream 94417 4524502 ~ 4524784 (-)
cnpy3 cnpy3,tnrc5,LOC102798477 coding downstream 101213 4511270 ~ 4517988 (-)
LOC113535753 LOC108258306,LOC108439384,LOC106595798 coding downstream 114462 4488149 ~ 4504739 (-)
LOC117596198 NA coding downstream 155987 4463108 ~ 4463214 (-)
brat1 brat1 coding upstream 442119 5069360 ~ 5112747 (-)
LOC113537465 atp1a1a.1,LOC108258575,LOC108429870,LOC107653678,LOC107717912,LOC107718011,LOC107698904,LOC107555257 coding upstream 626452 5253693 ~ 5268198 (-)
LOC113537466 atp1a1a.4,LOC108258574,LOC108429869,LOC108429865,LOC108258576,LOC107717913 coding upstream 642269 5269510 ~ 5277092 (-)
LOC113537467 atp1a1a.4,LOC108258577,LOC108429867,LOC108429865,LOC108429869,LOC108258578,LOC108258576,LOC108429866,LOC107717913,LOC107653679 coding upstream 661444 5288685 ~ 5316195 (-)
LOC113537353 atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265 coding upstream 704679 5331920 ~ 5340521 (-)
G370468 NA non-coding downstream 172095 4446458 ~ 4447106 (-)
G370425 NA non-coding downstream 477073 4141922 ~ 4142128 (-)
G370418 NA non-coding downstream 632579 3986205 ~ 3986622 (-)
G370416 NA non-coding downstream 635622 3983111 ~ 3983579 (-)
G370415 NA non-coding downstream 636261 3981710 ~ 3982940 (-)
G370665 NA non-coding upstream 177639 4804880 ~ 4811748 (-)
G370663 NA non-coding upstream 268986 4896227 ~ 4914035 (-)
G370699 NA non-coding upstream 418799 5046040 ~ 5046246 (-)
G370702 NA non-coding upstream 431612 5058853 ~ 5059054 (-)
G370705 NA non-coding upstream 434903 5062144 ~ 5062436 (-)
LOC117596167 NA other downstream 1765990 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 2044730 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 2786472 1824204 ~ 1832729 (-)
G369586 NA other downstream 2823977 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 3007535 1538453 ~ 1611666 (-)
G370658 NA other upstream 216088 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 761663 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 902751 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 1314798 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 1388485 6015726 ~ 6033393 (-)

Expression


Co-expression Network