tlr2 (tlr2)


Basic Information

Item Value
gene id tlr2
gene name tlr2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 703199 ~ 711315 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929176.2
TCAGGAGCAACGTCGGTAATTCTCATCACCAGAAACAAACGACTCCATCTTGGAAAGGTGACATCAGTGACGTTGAAGcggaaagagaggaagaaaggaaagatggCCGTATGACAGCAGGATTTATTACGAATCCTACATCGTATGCAGTCGTGAAGCTGTCAGGAAGGTCTTGGTACGCACGCAGGAGTGAAATAAGGActTCAATTCTTCCTGTGATGCAAATTTTATTTCATCCTGATGTTCTGAGCTTCTCGACAGGAACAACACGCATCCGACATGACAGCAATCAGGATGAAGGTGTCACTGTCCATATTTCTCAGTTTTAGCCTGACTTGGATTCACACTCAGACCTCCGAGAGACCAAACTGTTATGAATGTGACGAAGATCACTTCTGCAACTGTTCTGCAAAGAATCTCCACCGTGTACCCATAGTTCCCGCCAACGTTCTTTCTCTTGACGTGTCCTTCAACGAGATTGAGTCCATTACTCAGAAGGATCTGACCGTGTATACGGAGTTGAGAACTTTAAAGCTGCAGAATAACAAACTCAGCATGATCCACAACACAGCATTTAATTCCCAGAGCAAACTGGAAGAGCTTGATCTGTCGTTCAATAAACTGGAAAACATTTCTTCACTGTGGTTTTCTAAGCTTCAATCTCTGAAACATCTGAACATCTTGGGAAACCAATATACAACCTTGGGATCTGTTGCCCTGTTTCAATTTGCCGATAATCCTGCACTGAGAACGTTAAAATTTGGTAACCCTTTGATCAAGGATGTAAAACGGAATATGTTGGGTAAGATTAGACAGCTGGATGAGTTGACGTTTGTCTGTCGTAACCTAACGTCTTATGAGAATGGAAGTTTCCAGACAGCTCATCCCATCAGGGCGGTTTCAGTCAGCCTTCAGGAGTTGTTTCAGGATGATCCAGAGCTCGTATCAAAGATCCTTCGAGATGTTTCTCACCCTGAGACGTCACTGACCATTAGAGATGTTTCACTGGAGACAAGAGAACCCATACAAGCCTTTAAAGAGGTCAGAAAAGGTTGTACCAGAAGGCTTACCATTCAAAACGTAAGCACAACTGACGAGGGAGTCACCCACTTTCTAGAAGTTTTGGATGGCTCTCCGATGTCTTACATCGGTCTCGAGGATATTCACCTCAGAGGTCGTGGTTGGTGGCAAAGAGCTCAGTGGTCACACTACGAAAACCTGCACACGACTTTTATCCGCAACTTAGAAATCCAGGGCTTCTTCACTTTTAGCAGCATGATACAGTTAGCATTTCTGTTGAAGCGTCTCAACAACATATCCGTTATCAACGGCACTGTTTTCGTTATTCCCTGCAACACCACCTATTTTCTGCGAAAGGTGGAGTACTTGGACCTGAGCCAAAATCTCCTATCAGATATCACCATGCAAGAATCTTTATGCAACGGTCACTGCATCATGCGCAATCTTAACACACTCAATGTAAGTCACAACTCACTGAAATCTCTCCATCTCATGTCACGCCTGGTCACGTGTCTCCACAGGCTCACATCGCTGGACGTAAGTCACAACAACTTTTTGAAGATGCCACAGATTTGCAATTGGCCTGCAAGTCTCAGGTTTATGAATCTCTCTGCTACCAAACTTCATCGCATAACTCCGTGCCTGCCTCTGAGCCTGACTGTTCTGGATTTGAGCCAAAATTACCTGACAGAGTTCCACCACCATCTTCCCAACCTTATGGAGCTCTGGCTTACAGGAAACAGGTTTATTTCCCTCCCGGAAGGTGGACGTTTTCCCAGCCTGCGGATTTTGCTCATTCAAAGCAACACGTTGAACGTGTTCAACAAAAGCGACCTGATGGCATTCCAGTCTCTCCAGTTCTTGGAAGCTGGTCAGAACAATTTTGTCTGCAGCTGTGATTTTGTAGAATTCTTTAAAGGTCATATTGACCAGTTGATTACTCTAAGGGACGGACATCGCAGCTACGTGTGTGACTCTCCTTTCACGTTAAGGGGTCGTACTGTCGATAACGCTCAACTATCGGTCTTCGAGTGCCACATGATCCTGTCAGTGTCCATCCTCTGCTCTGTGATTGTCCTCGTCCTAATCACCATCGGGGTCACCTGCTACAAACTTCACGTCTTATGGTATCTACAGATGACTATGGCATGGTTAAAAGCCAAAGGTAAGCCAGCCGTACACAGAGAAGATGCTGTTCTTCGCTACGATGCTTTCGTATCATACAGCCAGCACGATGCAGAGTGGGTCGAAGAAATCCTAGTGCCGGAGTTAGAAAGCGCTGAACCTCCGGTTGCTCTGTGTCTGCACATGCGAGACTTCCTTCCAGGCCGCTGGATCGTCGACAACATCATCGAGTCCATCGAAAGTAGCTATCGGACTCTCTTCGTCCTGTCGGAGAACTTCGTGACGAGTGAGTGGTGCCGCTACGAGCTGAACTTTTCGCATTTTCGGATCATGGACGAGCACAACGATTCGGCCGTCCTGATCCTGCTGGAGCCTATCGCCAAAGAGACGATTCCTAAGCGTTTCTGCAAATTGCGCAAAATAATGAACTCCAGGACGTACCTCGAGTGGCCTCAGGACGAAGAAAGGCGAGAGGAGTTCTGGCACAATCTCCGAGCTGTGCTTAAGAGGGAGGACGACTGATACGCCTCGGATCACGCCTTTGTCAGATTGGAGACTCATTCTGTATTTCATTTTGTCTATTATTAAGGTTCTGAATTATGTCCGTGCAGAAGCTTTTTGAATTCTTCCTAATAAAATGCTACCCTGTAGCATTTAGTGTATTTATAAAAGCTTACTGACTAATTTAATCTAACATAATCAACACCGTTAGAGTTTATTATTCCTGTGCTGTTGTAAAGATTAGACTTATCTCAAACCTAGACTCAAGCTCTGTCTTAAATCTGATAAAAATCTgctttcaataaataaaagttttatccatttaaggATCGTTTGCATTAGGGGCTTTCCTTTTACTTGTCAGCTTCCTCATAAAATAGagaacataacacacacacacacacacacacacacacctaccccTTATGAGTAACTCTTTCGTT
>XM_034300162.1
tttttgtttttgcagctTCAATTCTTCCTGTGATGCAAATTTTATTTCATCCTGATGTTCTGAGCTTCTCGACAGGAACAACACGCATCCGACATGACAGCAATCAGGATGAAGGTGTCACTGTCCATATTTCTCAGTTTTAGCCTGACTTGGATTCACACTCAGACCTCCGAGAGACCAAACTGTTATGAATGTGACGAAGATCACTTCTGCAACTGTTCTGCAAAGAATCTCCACCGTGTACCCATAGTTCCCGCCAACGTTCTTTCTCTTGACGTGTCCTTCAACGAGATTGAGTCCATTACTCAGAAGGATCTGACCGTGTATACGGAGTTGAGAACTTTAAAGCTGCAGAATAACAAACTCAGCATGATCCACAACACAGCATTTAATTCCCAGAGCAAACTGGAAGAGCTTGATCTGTCGTTCAATAAACTGGAAAACATTTCTTCACTGTGGTTTTCTAAGCTTCAATCTCTGAAACATCTGAACATCTTGGGAAACCAATATACAACCTTGGGATCTGTTGCCCTGTTTCAATTTGCCGATAATCCTGCACTGAGAACGTTAAAATTTGGTAACCCTTTGATCAAGGATGTAAAACGGAATATGTTGGGTAAGATTAGACAGCTGGATGAGTTGACGTTTGTCTGTCGTAACCTAACGTCTTATGAGAATGGAAGTTTCCAGACAGCTCATCCCATCAGGGCGGTTTCAGTCAGCCTTCAGGAGTTGTTTCAGGATGATCCAGAGCTCGTATCAAAGATCCTTCGAGATGTTTCTCACCCTGAGACGTCACTGACCATTAGAGATGTTTCACTGGAGACAAGAGAACCCATACAAGCCTTTAAAGAGGTCAGAAAAGGTTGTACCAGAAGGCTTACCATTCAAAACGTAAGCACAACTGACGAGGGAGTCACCCACTTTCTAGAAGTTTTGGATGGCTCTCCGATGTCTTACATCGGTCTCGAGGATATTCACCTCAGAGGTCGTGGTTGGTGGCAAAGAGCTCAGTGGTCACACTACGAAAACCTGCACACGACTTTTATCCGCAACTTAGAAATCCAGGGCTTCTTCACTTTTAGCAGCATGATACAGTTAGCATTTCTGTTGAAGCGTCTCAACAACATATCCGTTATCAACGGCACTGTTTTCGTTATTCCCTGCAACACCACCTATTTTCTGCGAAAGGTGGAGTACTTGGACCTGAGCCAAAATCTCCTATCAGATATCACCATGCAAGAATCTTTATGCAACGGTCACTGCATCATGCGCAATCTTAACACACTCAATGTAAGTCACAACTCACTGAAATCTCTCCATCTCATGTCACGCCTGGTCACGTGTCTCCACAGGCTCACATCGCTGGACGTAAGTCACAACAACTTTTTGAAGATGCCACAGATTTGCAATTGGCCTGCAAGTCTCAGGTTTATGAATCTCTCTGCTACCAAACTTCATCGCATAACTCCGTGCCTGCCTCTGAGCCTGACTGTTCTGGATTTGAGCCAAAATTACCTGACAGAGTTCCACCACCATCTTCCCAACCTTATGGAGCTCTGGCTTACAGGAAACAGGTTTATTTCCCTCCCGGAAGGTGGACGTTTTCCCAGCCTGCGGATTTTGCTCATTCAAAGCAACACGTTGAACGTGTTCAACAAAAGCGACCTGATGGCATTCCAGTCTCTCCAGTTCTTGGAAGCTGGTCAGAACAATTTTGTCTGCAGCTGTGATTTTGTAGAATTCTTTAAAGGTCATATTGACCAGTTGATTACTCTAAGGGACGGACATCGCAGCTACGTGTGTGACTCTCCTTTCACGTTAAGGGGTCGTACTGTCGATAACGCTCAACTATCGGTCTTCGAGTGCCACATGATCCTGTCAGTGTCCATCCTCTGCTCTGTGATTGTCCTCGTCCTAATCACCATCGGGGTCACCTGCTACAAACTTCACGTCTTATGGTATCTACAGATGACTATGGCATGGTTAAAAGCCAAAGGTAAGCCAGCCGTACACAGAGAAGATGCTGTTCTTCGCTACGATGCTTTCGTATCATACAGCCAGCACGATGCAGAGTGGGTCGAAGAAATCCTAGTGCCGGAGTTAGAAAGCGCTGAACCTCCGGTTGCTCTGTGTCTGCACATGCGAGACTTCCTTCCAGGCCGCTGGATCGTCGACAACATCATCGAGTCCATCGAAAGTAGCTATCGGACTCTCTTCGTCCTGTCGGAGAACTTCGTGACGAGTGAGTGGTGCCGCTACGAGCTGAACTTTTCGCATTTTCGGATCATGGACGAGCACAACGATTCGGCCGTCCTGATCCTGCTGGAGCCTATCGCCAAAGAGACGATTCCTAAGCGTTTCTGCAAATTGCGCAAAATAATGAACTCCAGGACGTACCTCGAGTGGCCTCAGGACGAAGAAAGGCGAGAGGAGTTCTGGCACAATCTCCGAGCTGTGCTTAAGAGGGAGGACGACTGATACGCCTCGGATCACGCCTTTGTCAGATTGGAGACTCATTCTGTATTTCATTTTGTCTATTATTAAGGTTCTGAATTATGTCCGTGCAGAAGCTTTTTGAATTCTTCCTAATAAAATGCTACCCTGTAGCATTTAGTGTATTTATAAAAGCTTACTGACTAATTTAATCTAACATAATCAACACCGTTAGAGTTTATTATTCCTGTGCTGTTGTAAAGATTAGACTTATCTCAAACCTAGACTCAAGCTCTGTCTTAAATCTGATAAAAATCTgctttcaataaataaaagttttatccatttaaggATCGTTTGCATTAGGGGCTTTCCTTTTACTTGTCAGCTTCCTCATAAAATAGagaacataacacacacacacacacacacacacacacctaccccTTATGAGTAACTCTTTCGTT

Function

symbol description
tlr2 Predicted to enable signaling receptor activity and triacyl lipopeptide binding activity. Acts upstream of or within activation of immune response and immune response. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; integument; liver; and spleen. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); dermatitis (multiple); gastrointestinal system cancer (multiple); lung disease (multiple); and rhinitis (multiple). Orthologous to human TLR2 (toll like receptor 2).

NR:

description
Toll-like-receptor 2

GO: NA

KEGG:

id description
K10159 TLR2, CD282; toll-like receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929176.2 True 3089 mRNA 0.45 4 703199 711315
XM_034300162.1 False 2903 mRNA 0.45 2 703199 708240

Neighbor

gene id symbol gene type direction distance location
LOC113535779 cacng3,LOC108258515,LOC108439097 coding downstream 51771 645476 ~ 651428 (-)
plk1 plk1,LOC107722962,LOC107702528 coding downstream 113803 582498 ~ 589396 (-)
chtf18 chtf18,LOC107725360 coding downstream 144987 544258 ~ 558212 (-)
uncx4.1 LOC108258667 coding downstream 178134 518604 ~ 525065 (-)
elfn1b elfn1b,LOC108258545,LOC108439159,LOC107722936,LOC107590768,LOC107702506,LOC107714143 coding downstream 294910 352453 ~ 408289 (-)
fscn1b LOC108258690 coding upstream 185909 897224 ~ 902489 (-)
smcr8b LOC108258855 coding upstream 252540 963855 ~ 969617 (-)
mief2 mief2,LOC108258856,LOC107722977,LOC107725398 coding upstream 259477 970792 ~ 979232 (-)
alkbh5 alkbh5 coding upstream 269555 980870 ~ 986570 (-)
myo15ab LOC108258396,LOC107725350,LOC107692700,LOC108441473,LOC108439093 coding upstream 276440 987755 ~ 1026021 (-)
G368944 NA non-coding downstream 1911 701084 ~ 701288 (-)
G368912 NA non-coding downstream 30169 671640 ~ 673030 (-)
G368903 NA non-coding downstream 121339 578593 ~ 581860 (-)
G368725 NA non-coding downstream 421296 281439 ~ 281903 (-)
G368713 NA non-coding downstream 458419 244177 ~ 244780 (-)
G369130 NA non-coding upstream 160274 871589 ~ 875203 (-)
LOC117596193 NA non-coding upstream 555391 1266706 ~ 1270425 (-)
G369243 LOC108258881,LOC108261507 non-coding upstream 565758 1277073 ~ 1277650 (-)
G369298 NA non-coding upstream 654048 1365363 ~ 1375213 (-)
G369297 NA non-coding upstream 658819 1370134 ~ 1396598 (-)
prkcba prkcb other downstream 854 653453 ~ 702345 (-)
rasd3 LOC108258668 other downstream 110604 591136 ~ 592595 (-)
pmm2 pmm2,LOC107692644,LOC101469678,LOC102299325,LOC100707130,LOC102200931,LOC107082664 other downstream 413291 284863 ~ 289908 (-)
si:dkeyp-75b4.8 NA other downstream 476097 202654 ~ 227102 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other upstream 158444 869759 ~ 948803 (-)
G369125 actb other upstream 200238 911553 ~ 915683 (-)
G369242 LOC108258881 other upstream 564706 1276021 ~ 1276813 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other upstream 827138 1538453 ~ 1611666 (-)
G369586 NA other upstream 1065004 1776319 ~ 1795224 (-)

Expression


Co-expression Network