LOC113535702 (mx1)


Basic Information

Item Value
gene id LOC113535702
gene name mx1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2566757 ~ 2574471 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929206.2
GTAAAGCAACCCGGTGTGTATAAGTTTCGGTTTTTTAAGAAGCACAGAGGAAACAGAGCTGCTGTGTAAAAGCGCACACGAAGTCACATTCCTTGTTCATAATTGTTGATTGTTTACCGAGTTTCTGAGCTGTCGGAGATGAGCGCGAGCCTGAGTGAGCAGTATGAGGAGAAGGTGCGTCCGTGCATCGACCTGATCGACTCTCTGCGCGCGCTCGGTGTGGAGAAGGACCTCGCGCTGCCCGCCATCGCCGTGATCGGAGACCAGAGCTCGGGGAAGAGCTCGGTGCTGGAGGCGCTGTCCGGAGTCGCGCTGCCCCGCGGGAGTGGTATTGTGACGAGATGTCCACTcgagctgaagatgaagaggagcCGAGAGGAAGACTTCTGGCATGGAAAGATCAAGTACAAGAAAGATCATGATCAGGATCATGAGGAAGAGATTGACGATCCAGCAGATGTGGAGAAAAAGATTAGAGAAGCTCAGGACCATATGGCTGGGGTCGGCGTGGGCATCAGTGAAGAGCTCATCAGCCTGGAAGTGACGTCAGCTGATGTTCCCGACCTCACACTCATCGATCTGCCTGGTATTGCTCGAGTGGCAGTCAAAGGCCAACCAGAGAACATCGGAGAACAGATTAAGAGGCTGATCCGAAAGTTCATCACAAAGCAAGAAACCATCAACCTGGTGGTGGTGCCGTGTAACGTGGACATCGCCACTACTGAAGCGCTGAGGATGGCTCAGGAAGTTGATCCAAATGGCGAGAGAACCCTCGGCATCCTAACGAAGCCCGACCTGGTGGATAAAGGCACGGAGGACACGGTGGTGTCCATCATCCATAACGAGATCATTTACCTCACTAAAGGCTACATGATCGTCAGGTGCCGAGGGCAGAAGGAAATCATGGACCGCGTCTCTCTGCACGAAGCCATCGAGAAGGAGAAGGACTTCTTTAAAGACCACTCACATTTCAGTGAGCTGTATGATGAAGGCATGGCCACCATTCCCAACCTGGCTGAGAAGCTCACACTCGAACTCGTCCATCACATCGAGcGATCTCTGCCACGACTGGAGGAGCAGATTGAGATAAAGTTGGCTGAAACTCAGGGTGAACTGGACCGCTATGGCTCAGGGCCTCCTACAGAACCAGGAGAGAGGATCTTCTTCCTGATTGACAAAGTCACAGCGTTCACTCAGGACGCCATTAACCTCACGACCGGAGAGGAGCTGAAGAACCTCCAACATCTCAACATCTTCTCGAGCCTGCGGAGGCAGTTTGCTCTCTGGAAGAATCATCTGGACAACTCAGGAGAGACGTTTAAGAGGAAGATTGAGAAGGAGGTGAAcgagtatgaagaaaaatacCGAGGCAGAGAACTCCCAGGATTCATCAACTACAAGACCTTCGAGGTGATGGTGAAGGACCAGATCAAGCAGCTGGAGGAACCTGCCATCAGGAGACTGAAGGAAATCTCAGATCTCATTCGGAAGGGCTTCATCCAACTGGCTCAATCCAGCTTCTTGGGCTTCCCCAATCTCCTCAAAATGGCAAAGACTAAGATTGAAAACATAAAGCAGGCAAAGGAGTCGGAGGCCGAATCAATGCTGAGGACTCAGTTTAAGATGGAGCTGATCGTCTACACCCAAGACCACATGTACAGCGACACCCTGAGCACGGTGAAGcttgaggaggaagaagaagggaaacaaaaAATTTGCATTCCTCGCATTGCTTCGTGTAGTTTATACAATCAGTCAGACAACAGAGCCACTCTTGAGGAACTGATGCGTCACCTCAAGTCCTACTACAGCATTGCGAGTAAGCGTCTGGCTGACCAGCTGCCGCTGGTGATCAGGTACCTGCTGCTGCAGGAGTCGGCGGcacagctgcagagagagatGCTCCAGCTCATACAGGACAAAAACAACGCGGAGCAGCTGCTGAAAGAAGATCATGACATCGGCAGCAAACGCAACAACCTGCAAAACCGCCAGAAGCGTCTGTTGGAGGCCCGCAACTACCTGGTCAAGTTTTAGAGTCACATATAGTGTCTATTTTGGACATGGCGTTACTGTTGATCACTCGAAGGCAAGTAAAAAGAGTGATATAcagttcaataaataaattataatagtAGCAATGTTccaatattataaacatttttactatCTTTTACTATGCTGTTATAAACTGATTTAGTTCCCATAATtagtgaaagtgtgtgtcagCTATTTAAAATAcctttttttgtattgtatattgAAATTTCTGCTGCTatctgtttcccttttttttcagcTGGATCAATCTTTCAATATTCTAGTATGTACATGTATTTACCCTATCAAGCTGTACTCCCCTCTTACtaccatatacagtactgtatgatCATACTGTCAACATAGCGtgtcataatattaaaaatacactatatggccaaaagtttgtggacacatgatcATCACATCAGTATGTGATTTTTGATCATctcattccagatgtagtcccctGTTGTTGTCATAATGActttcactcttctgggaaggcttttcactagatatTGGAgtgtggctttggggatttgtgctcattcagtcgcaagagcattagtgagatcaggcactgatgttgggtgaggtgttcagtggggttgaggtcctattcactgtgtttatgaGAAAATTCCACGGAGACAGCTCACTCTTGTGATAGATAGAAGTTAAAATGCTCTGATAGCTCAGAGTTCGTGAAGAGACACTGTTTCTCAATTTCAGAGTATGTCAGTTGTCTTGAGTCTATTCCTAAACATTTGCCATAAAAACTGAGTGAAATGA
>XR_003403632.2
GTAAAGCAACCCGGTGTGTATAAGTTTCGGTTTTTTAAGAAGCACAGAGGAAACAGAGCTGCTGTGTAAAAGCGCACACGAAGTCACATTCCTTGTTCATAATTGTTGATTGTTTACCGAGTTTCTGAGCTGTCGGAGATGAGCGCGAGCCTGAGTGAGCAGTATGAGGAGAAGGTGCGTCCGTGCATCGACCTGATCGACTCTCTGCGCGCGCTCGGTGTGGAGAAGGACCTCGCGCTGCCCGCCATCGCCGTGATCGGAGACCAGAGCTCGGGGAAGAGCTCGGTGCTGGAGGCGCTGTCCGGAGTCGCGCTGCCCCGCGGGAGTGGTATTGTGACGAGATGTCCACTcgagctgaagatgaagaggagcCGAGAGGAAGACTTCTGGCATGGAAAGATCAAGTACAAGAAAGATCATGATCAGGATCATGAGGAAGAGATTGACGATCCAGCAGATGTGGAGAAAAAGATTAGAGAAGCTCAGGACCATATGGCTGGGGTCGGCGTGGGCATCAGTGAAGAGCTCATCAGCCTGGAAGTGACGTCAGCTGATGTTCCCGACCTCACACTCATCGATCTGCCTGGTATTGCTCGAGTGGCAGTCAAAGGCCAACCAGAGAACATCGGAGAACAGATTAAGAGGCTGATCCGAAAGTTCATCACAAAGCAAGAAACCATCAACCTGGTGGTGGTGCCGTGTAACGTGGACATCGCCACTACTGAAGCGCTGAGGATGGCTCAGGAAGTTGATCCAAATGGCGAGAGAACCCTCGGCATCCTAACGAAGCCCGACCTGGTGGATAAAGGCACGGAGGACACGGTGGTGTCCATCATCCATAACGAGATCATTTACCTCACTAAAGGCTACATGATCGTCAGGTGCCGAGGGCAGAAGGAAATCATGGACCGCGTCTCTCTGCACGAAGCCATCGAGAAGGAGAAGGACTTCTTTAAAGACCACTCACATTTCAGTGAGCTGTATGATGAAGGCATGGCCACCATTCCCAACCTGGCTGAGAAGCTCACACTCGAACTCGTCCATCACATCGAGcGATCTCTGCCACGACTGGAGGAGCAGATTGAGATAAAGTTGGCTGAAACTCAGGGTGAACTGGACCGCTATGGCTCAGGGCCTCCTACAGAACCAGGAGAGAGGATCTTCTTCCTGATTGACAAAGTCACAGCGTTCACTCAGGACGCCATTAACCTCACGACCGGAGAGGAGCTGAAGAACCTCCAACATCTCAACATCTTCTCGAGCCTGCGGAGGCAGTTTGCTCTCTGGAAGAATCATCTGGACAACTCAGGAGAGACGTTTAAGAGGAAGATTGAGAAGGAGGTGAAcgagtatgaagaaaaatacCGAGGCAGAGAACTCCCAGGATTCATCAACTACAAGACCTTCGAGGTGATGGTGAAGGACCAGATCAAGCAGCTGGAGGAACCTGCCATCAGGAGACTGAAGGAAATCTCAGATCTCATTCGGAAGGGCTTCATCCAACTGGCTCAATCCAGCTTCTTGGGCTTCCCCAATCTCCTCAAAATGGCAAAGACTAAGATTGAAAACATAAAGCAGGCAAAGGAGTCGGAGGCCGAATCAATGCTGAGGACTCAGTTTAAGATGGAGCTGATCGTCTACACCCAAGACCACATGTACAGCGACACCCTGAGCACGGTGAAGcttgaggaggaagaagaagggaaacaaaaAATTTGCATTCCTCGCATTGCTTCGTGTAGTTTATACAATCAGTCAGACAACAGAGCCACTCTTGAGGAACTGATGCGTCACCTCAAGTCCTACTACAGCATTGCGAGTAAGCGTCTGGCTGACCAGCTGCCGCTGGTGATCAGGTACCTGCTGCTGCAGGAGTCGGCGGcacagctgcagagagagatGCTCCAGCTCATACAGGACAAAAACAACGCGGAGCAGCTGCTGAAAGAAGATCATGACATCGGCAGCAAACGCAACAACCTGCAAAACCGCCAGAAGCGTCTGTTGGAGGCCCGCAACTACCTGGTCAAGTTTTAGAGTCACATATAGTGTCTATTTTGGACATGGCGTTACTGTTGATCACTCGAAGcTGGATCAATCTTTCAATATTCTAGTATGTACATGTATTTACCCTATCAAGCTGTACTCCCCTCTTACtaccatatacagtactgtatgatCATACTGTCAACATAGCGtgtcataatattaaaaatacactatatggccaaaagtttgtggacacatgatcATCACATCAGTATGTGATTTTTGATCATctcattccagatgtagtcccctGTTGTTGTCATAATGActttcactcttctgggaaggcttttcactagatatTGGAgtgtggctttggggatttgtgctcattcagtcgcaagagcattagtgagatcaggcactgatgttgggtgaggtgttcagtggggttgaggtcctattcactgtgtttatgaGAAAATTCCACGGAGACAGCTCACTCTTGTGATAGATAGAAGTTAAAATGCTCTGATAGCTCAGAGTTCGTGAAGAGACACTGTTTCTCAATTTCAGAGTATGTCAGTTGTCTTGAGTCTATTCCTAAACATTTGCCATAAAAACTGAGTGAAATGA

Function

symbol description
mx1 Enables identical protein binding activity. Involved in antiviral innate immune response; interleukin-27-mediated signaling pathway; and negative regulation of viral genome replication. Located in cytosol; nuclear membrane; and perinuclear region of cytoplasm. Implicated in alopecia areata; avian influenza; liver disease; and prostate cancer. Biomarker of Human papillomavirus infectious disease.

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K14754 MX; interferon-induced GTP-binding protein Mx

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929206.2 True 2835 mRNA 0.47 12 2566757 2574471
XR_003403632.2 False 2625 misc_RNA 0.49 13 2566757 2574471

Neighbor

gene id symbol gene type direction distance location
LOC113535562 LOC108258657 coding downstream 23891 2523115 ~ 2542866 (-)
LOC113535442 LOC108258868,LOC108258869 coding downstream 51739 2501030 ~ 2515018 (-)
LOC113535761 NA coding downstream 215768 2347228 ~ 2350989 (-)
LOC113535598 LOC108258873 coding downstream 235087 2282791 ~ 2331670 (-)
LOC113535651 NA coding downstream 295104 2261289 ~ 2271653 (-)
LOC113535812 mx1 coding upstream 979 2575450 ~ 2583050 (-)
efnb2b LOC108259076 coding upstream 43155 2617626 ~ 2633096 (-)
cpo LOC108258336,LOC108440461 coding upstream 62864 2637335 ~ 2642686 (-)
atic atic,pur9 coding upstream 143586 2718057 ~ 2728695 (-)
stk16 stk16,LOC107674016,LOC107750290,LOC107676064 coding upstream 172797 2747268 ~ 2757237 (-)
G369927 NA non-coding downstream 1505 2564712 ~ 2565252 (-)
G369930 NA non-coding downstream 3220 2562804 ~ 2563537 (-)
G369928 pcnp non-coding downstream 4299 2560880 ~ 2562458 (-)
G369926 NA non-coding downstream 6697 2559213 ~ 2560060 (-)
G369924 LOC107702554 non-coding downstream 7948 2555979 ~ 2558809 (-)
G369980 NA non-coding upstream 99084 2673555 ~ 2678270 (-)
G369988 NA non-coding upstream 119678 2694149 ~ 2694577 (-)
G370023 LOC108257886,LOC108258553,LOC108258555,LOC108258552,LOC108258559,LOC108258557,LOC108262136,LOC108258561,LOC108275310,LOC108257788 non-coding upstream 196782 2771253 ~ 2790054 (-)
G370024 LOC108258555,LOC108258552,LOC108258557,LOC108258553,LOC108258556,LOC108258559,LOC108257788,LOC108257800 non-coding upstream 200411 2774882 ~ 2775395 (-)
G370028 NA non-coding upstream 208801 2783272 ~ 2790676 (-)
mdh1b mdh1b other downstream 734028 1824204 ~ 1832729 (-)
G369586 NA other downstream 771533 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 955091 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 1289944 1276021 ~ 1276813 (-)
zgc:77849 zgc:77849,LOC108258689,LOC103038624,LOC108439082,LOC107722949,LOC107692663,LOC107590708 other downstream 1617954 869759 ~ 948803 (-)
LOC117596167 NA other upstream 268741 2843212 ~ 2853211 (-)
G370658 NA other upstream 2268858 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 2814433 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 2955521 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 3367568 5942039 ~ 5952313 (-)

Expression


Co-expression Network