stk16 (stk16,LOC107674016,LOC107750290,LOC107676064)


Basic Information

Item Value
gene id stk16
gene name stk16,LOC107674016,LOC107750290,LOC107676064
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2747268 ~ 2757237 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929212.2
ACCCTGAAGACGTCAGTGCTACGTCATAGCGTACCCGGAAGTGCGTGTCTGTAGTGTACGCGGAAGTATCACGCTGCTGTAGCTGAATAGCGGAGGAGGTCGGAATCCGTAAATAAAGttcTGCTCGATGAGTGAGCGATGCTAGGTCGAGGATGGGACATGCACTGTGTATCTGCTCTCGCAGTTCCATCACCATCGACAACAAGAGATACTACTTCATCCAGAAACTCGACGAGGGCGGGTTTAGCTACGTTGATCTGGTAGAAGGAGCTCAGGACGGCCGTTTCTATGCTCTGAAGCGAATCCTTTGTCATGACCGGGAGGGACGGAAGGAGGCACAGACGGAGGTGGAGATGCACCGACTGTTCAACCACCCCAACATCCTGAGTCTGACGGGCCACGCCTTCATGGAGCGTGGAGGAAAGACCGAGGCCTGGCTCCTCCTGCCCTACATCAGTAAAGGAAGCCTGTGGTCCGTCCTGGAGAAGCTGAGGGAAAAAGGTAGCTCCATGCCTGAGAGCCGGATCCTGCACATTTTCCGTGGCGTCTGTGAAGGTCTCAAAGCCATCCATGACAAGGGATATGCACACAGAGACTTGAAGCCCACTAACGTGCTCCTGGAGGAGAACGACAAGCCGGTGCTGATGGACCTCGGTTCTATGAACAAAGCCCGGATTGAAGTGAAAGGCTCCAGAGAGGCCATGACTGTGCAGgaCTGGGCAGCTCAGAGATGCACCATCTCCTACAGAGCACCTGAGCTTTTCAACGTGGAGAGCCACTGTATCATTGACGAAAAGACAGATATTTGGtcatTAGggtgtgtactgtactgtatgatgATGCTCGAAGGACCGTACGATATGGTGTTTCAGAAAGGAGACAGCGTCGCCCTGGCTGTCCAAAACCCAGTTGCCATTCCACAACCGTGCAgCTACTCCGAAGGACTGCAGACACTCCTGAGCTCCATCATGGTGACGAACCCTCAGGAGAGGCCCAACATCGACTGGGTGCTCGAACGGGTCAAAAACCTCCAGAGCTCAGATGGAGGAGCGATCGAAACCGACAGAGTATGACAAAGGGAGCATGATTTTTATCTTCTATctagactgttttttttcccccttactTTTACCTCATTAAACACATTGAGAACACATGCTCCAAACACaaattctctcacacacacacctgcatcaGCCAGGATGAAGGACGTCATTGATTGCGTTGAAGGTTGTCAAAGTTGGACCATGCAAATTTGGATTTTATGTTAGCACTAAAGCTAATAACGTTTCTCCACCTGCTCAAGTGTCCCTGTGGGTacaaggggcggagcttaagttaAATTTGATGATCCAGTCACAAAATTGACCATGTGACATCACAACTAgcctttttaatcatttctttgaCTCAGTGTACTGCTTAGCATAAAATAATAGTTTAGCATATTGAGTTATTGAGCTATTGAGCCgtctttttaaattaatctgtCTGACATTAACATTACGTCTGTCGCAGCTAACTACCGATAATGAAACTATTATGCTGTTTAATTAGAACTAATTTGCTAGAAGctagtttaaattaggctacttaTTATATTTTGTACTTACGACAGGGAACCAACTGTGCTAGCCGTCTGGTTAAAATTAGGCTAGTTATTACATTTTGTGGTTAAGAtcagtagctagctaacattaaattAACTATGGTATATGATAAGCATTATAGAATTTTCAATATCATACTAACAATTAAGCATAACTAGAGGTCGTAAATTACGTAGCTAGCCAGTTTCTTTAACAAACTAGCAAATGTTAggcttattatattatattatattatattatattatattatattatattataatattatataatatatattttatattatattatattatattatattatattatatattttgataGCAAGCTTATTAACAGTAGGCtagtttttatatttgatgACCAGTATTTTATGCTAAACTGTACATCGAGCGAAAGGTACAATTAAGATAATTACGATAAAAGAAGTGTCTTATTCTGGAAATTAAGTATCTgttcttattttatttgtagaaaGAAAGGTTAAAGTTGAAGTACGTATGTAAACAGTAACAGTTACAGTGTGTACGTGTGGAAGACGAACCTGGATTTCgtgaaattttaaaatgacaaagcGTCTAATAAGGCCAGCGGGCATTTGCCATGTTAGCCAGTGTTGCATTTTATGACAAAACAGCAGCATCTAGGACTGGAATGATATGGCATATTGTGTAGTTGCGCAGGTTCGAACTCGCTGATATTGACTGACATCTCTGGAATTCCCACctccttcctccatctctcGGCCAGTGCTTTGTCTCAACTTGATTTTCCTCACTTTCTGTCACGGTACATGGAAAATGTATGTTAGACTTGGCTAACATTAATATATAGTTAACGTCAGTTAGCTATATTAATTAGATACACACCAAaaaattttgtccaattttttttatttactcttcaTTGCATTTTTACTCCCGTCCAGTTTCCACATTATTCCTCTTAGGGGTTGTCAGGCTCAATCCTGTGATATCTTCAATATATCGCCGCGGCCTTAGTGAGCGTTGATCGACAGTACGGCTGCAGTATTAATTCGTAAAGTAACAGTATAAAATGCAAACGGTTTCTAAATGTGATTTTGATAACAGAGCAAGTGAGCAGTGACAATGTCGTCATTCGCTCTGGAGTGTGTATCATTGTGTTTTCATTTGCtgcttttttaatgtgtgtgttttatgctcAAGTGTGCGGTTGAATTTTTCTTAACTGGATGATGTGGTACACGGGATCATTGTGTTCAACAGGCGTGTGCTGAAAATTTCTtcattacatcattttaattCCCCGAAGTTTTATTGAATCTTTTGACACTAATATACAAATGTTCATGTCTCATCGCAactttttaaccaaaaaaacatgttggtaGGCATTGTATTCAGGACACGCCATTCCGTGTATAAAATTAGCTTCGTGGGGGGGAAAAATCACTTGAATGGGAAAGGACACGGAAGAACTAGCTTGGAAGGAGTAGCCAATAGAAACTAAGAAGGCGGGGCTTTTGCTACTTTAAAAATCAGTTAAAGTTTATGAAGATTGGCCACTTTAGGCTCCCGTAGCTCTActttataacattatttattaccGAAAGAATATTTACAAGATTTTCAGACTTACGGTTGATTTAattgcaaatttaaaataaagtgccaCATTACATATGTTTTTCTTACATAAAAGTAATCTACTGTTACCTAtcagcataatttttttttttttttttttttttttttttgcatagatCCTCTTAAAAGGGTCTTTTCTGGCAATTAAGTTAAAATCACATCTGCTCTAGTTAGTAATAAATTATTCCTCAGGCAGAGAATAACCTCTGGAGATAGTTTAAAATCCATGATAACTATAATGTGGTGCTGAGTATCACAATTTGCTGTGTATAAATGAATATCGGTATATGCACACTTATATTTGGGAGCTGCGTGTAATTtatgtcattttgttgtttgtttgttttttttccagcagttCTCAAAGCTTAATGTTAATCTGAGGATGTTAATTTGCAGTAAATTTTACAAAgtcatattgtattttattttatttgtatgtatttgaACAGAGAATCATGTCTGTAAATATGgctcttgtttttatttcataatgattaaaaataattcatgctTTCAa
>XM_034300320.1
CGTAAATAAAGGTAAATACCCGTGTTTGTATTTGCGTTTGCGCTTGAAAATGTACGACATATTAATTTATGGTTAATGACGTCAGCCACGAgccttgtctttttttaagttcTGCTCGATGAGTGAGCGATGCTAGGTCGAGGATGGGACATGCACTGTGTATCTGCTCTCGCAGTTCCATCACCATCGACAACAAGAGATACTACTTCATCCAGAAACTCGACGAGGGCGGGTTTAGCTACGTTGATCTGGTAGAAGGAGCTCAGGACGGCCGTTTCTATGCTCTGAAGCGAATCCTTTGTCATGACCGGGAGGGACGGAAGGAGGCACAGACGGAGGTGGAGATGCACCGACTGTTCAACCACCCCAACATCCTGAGTCTGACGGGCCACGCCTTCATGGAGCGTGGAGGAAAGACCGAGGCCTGGCTCCTCCTGCCCTACATCAGTAAAGGAAGCCTGTGGTCCGTCCTGGAGAAGCTGAGGGAAAAAGGTAGCTCCATGCCTGAGAGCCGGATCCTGCACATTTTCCGTGGCGTCTGTGAAGGTCTCAAAGCCATCCATGACAAGGGATATGCACACAGAGACTTGAAGCCCACTAACGTGCTCCTGGAGGAGAACGACAAGCCGGTGCTGATGGACCTCGGTTCTATGAACAAAGCCCGGATTGAAGTGAAAGGCTCCAGAGAGGCCATGACTGTGCAGgaCTGGGCAGCTCAGAGATGCACCATCTCCTACAGAGCACCTGAGCTTTTCAACGTGGAGAGCCACTGTATCATTGACGAAAAGACAGATATTTGGtcatTAGggtgtgtactgtactgtatgatgATGCTCGAAGGACCGTACGATATGGTGTTTCAGAAAGGAGACAGCGTCGCCCTGGCTGTCCAAAACCCAGTTGCCATTCCACAACCGTGCAgCTACTCCGAAGGACTGCAGACACTCCTGAGCTCCATCATGGTGACGAACCCTCAGGAGAGGCCCAACATCGACTGGGTGCTCGAACGGGTCAAAAACCTCCAGAGCTCAGATGGAGGAGCGATCGAAACCGACAGAGTATGACAAAGGGAGCATGATTTTTATCTTCTA

Function

symbol description
stk16 Predicted to enable protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in Golgi apparatus. Orthologous to human STK16 (serine/threonine kinase 16).

NR:

description
PREDICTED: serine/threonine-protein kinase 16 isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08856 STK16; serine/threonine kinase 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929212.2 True 3760 mRNA 0.39 8 2747268 2757237
XM_034300320.1 False 1091 mRNA 0.52 8 2749928 2757130

Neighbor

gene id symbol gene type direction distance location
atic atic,pur9 coding downstream 18573 2718057 ~ 2728695 (-)
cpo LOC108258336,LOC108440461 coding downstream 104582 2637335 ~ 2642686 (-)
efnb2b LOC108259076 coding downstream 114172 2617626 ~ 2633096 (-)
LOC113535812 mx1 coding downstream 164218 2575450 ~ 2583050 (-)
LOC113535562 LOC108258657 coding downstream 204402 2523115 ~ 2542866 (-)
tuba8l2 tuba8l2,LOC108411703,LOC103042625,LOC107556293,LOC107750365,LOC100708793 coding upstream 1732 2758969 ~ 2767493 (-)
LOC113535758 LOC108257886 coding upstream 11392 2768629 ~ 2770657 (-)
LOC113535480 LOC108258552,LOC108258561,LOC108258559 coding upstream 40031 2797268 ~ 2804129 (-)
LOC113535756 LOC108258552 coding upstream 51080 2808317 ~ 2811609 (-)
LOC113535483 LOC108258552,LOC108258561 coding upstream 66756 2823993 ~ 2827600 (-)
G369988 NA non-coding downstream 52691 2694149 ~ 2694577 (-)
G369980 NA non-coding downstream 68998 2673555 ~ 2678270 (-)
G369927 NA non-coding downstream 182016 2564712 ~ 2565252 (-)
G369930 NA non-coding downstream 183731 2562804 ~ 2563537 (-)
G369928 pcnp non-coding downstream 184810 2560880 ~ 2562458 (-)
G370023 LOC108257886,LOC108258553,LOC108258555,LOC108258552,LOC108258559,LOC108258557,LOC108262136,LOC108258561,LOC108275310,LOC108257788 non-coding upstream 14016 2771253 ~ 2790054 (-)
G370024 LOC108258555,LOC108258552,LOC108258557,LOC108258553,LOC108258556,LOC108258559,LOC108257788,LOC108257800 non-coding upstream 17645 2774882 ~ 2775395 (-)
G370028 NA non-coding upstream 26035 2783272 ~ 2790676 (-)
G370019 NA non-coding upstream 61366 2818603 ~ 2821314 (-)
G370127 NA non-coding upstream 192184 2949421 ~ 2984930 (-)
LOC113535702 mx1 other downstream 172797 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 914539 1824204 ~ 1832729 (-)
G369586 NA other downstream 952044 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 1135602 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 1470455 1276021 ~ 1276813 (-)
LOC117596167 NA other upstream 85975 2843212 ~ 2853211 (-)
G370658 NA other upstream 2086092 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 2631667 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 2772755 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 3184802 5942039 ~ 5952313 (-)

Expression


Co-expression Network