klf7a (LOC108258322)


Basic Information

Item Value
gene id klf7a
gene name LOC108258322
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1915663 ~ 1937075 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929215.2
GCTGAGTGGCAGGTGCGCGCGCGCCTCCTCTCTGCTCGTTCAGTCGGTACGCGCGAGGCGGCCGGCGCGCGATTCCTCTCCCATCACCACCATCTCCATCTCAGCGCTCTGTGCTGGTACCTCTGCTAACTTTCACTTCGTCTTTTCTGCGTTTATTTTAACGATTTATTcctttcatttgaaaaaaaaaaaaatcgaccTCCCTTGAGcgtttagggttttttttttagtatagaGGAGAAAAGTGATGCTGAATGTTCCCGCGGGACTCTGAGGACATTTTTTCCTTGGATTTCTGGCGTCTCGCGTTAGCATCATCAGGAGCATCATCATGGACGTCCTGGccaactacagcatcttccagGAGCTGCAGCTCGTCCACGACACCGGCTATTTCTCCGCCATGCCGTCTCTGGAGGAAAACTGGCAGCAGACATGTCTAGAGCTGGAGCGCTACCTTCAGACAGAACCCAAGCGACTATCAGAGCTCTTCGAAGATGAACTGGACCGCCTGCTCTCTCCAGACTTCATGGAAGGACATGGAGAGGACGAATCGCTCAACCCGTCGCTCTTCAGCCTCACGTCATCCCCGCTGCGCCTCGACGGAGAGCCGCTGACCTCGCCGTCCACCCCGGACCCCTCCGACCTCAGCACAGGGGTCGACGTGGCCCAGCTGAACGCGCTCACCTCTCTGACTCCGCCCTCGTCCCCGGAACTGGAGCGCCATTCTCTCAAGACCGCCCACACTCTCTGTACCACAGCCGACGGGACTCTGATGCTGAAACTGGCCGTGGCGCGGCCGCTCTCGCCCGGACCCAGCGACGGCGAGCAGGCGAGCGGCACCGCAGGGGGCAGAGACTCAGCCGACAGCAAGAAGAGAGTGCACCGCTGCCAGTTCGACGGCTGCAGGAAGGTGTACACCAAGAGCTCTCACCTCAAAGCACACCAGAGGACACACACAGgTGAGAAACCCTACAAGTGCTCATGGGAAGGCTGCGAGTGGCGTTTCGCACGCAGCGACGAACTGACGAGACACTACCGCAAACACACGGGCGCCAAACCCTTCAAGTGCGCACACTGCGACAGGTGCTTCTCGCGGTCGGACCACCTGGCGCTCCACATGAAAAGGCACGTTTAAATAAAAGGACGACGAGTCCGAGAGAAAAGCggacaaacagataaaatataGAAAGGAGGACTCGGGAACGAGGGGAGCAAATCCGAACGCTTTTTTTACGAGACGAATCAGATTCTCGGTTCCGGTTCCGGTTTGGAGGAGAACTTTATAAAACTGATTAGGAATTTAGACCCAGTAAACACACTGACTCAGCTAGGAGTTTTCTCCTGAACATGGAACGGTGTGGaatgtattttcatttcatagCTAGTACGTACAAAACCGGAGGACTGTTGACGAACAGGATCACTTCTGGAGCTTTggggtttttgttgttgttttttttttttttttttttgagtggatAAATACGAAGAACATCTATTGacacaattcttttttttgtttgagctATAAGACTCTTCCTGTTTTACGGGCACAATTAAGAAACATTTCTTGCACAAGCAGTCGAGGATCAAACGCCGAAGACAATTTTACTCCATCGGGGGACGAAATGTCAGAtttgttattgttaatgttattgCACACATCATGAACAgtgctatttatttatgcttcttgtttgttgtt

Function

NR:

description
PREDICTED: Krueppel-like factor 7

GO:

id name namespace
GO:0021634 optic nerve formation biological_process

KEGG:

id description
K09207 KLF6_7; krueppel-like factor 6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929215.2 True 1708 mRNA 0.52 4 1915663 1937075

Neighbor

gene id symbol gene type direction distance location
LOC113535707 LOC108258365,LOC108437114 coding downstream 6289 1895048 ~ 1909374 (-)
pard3ba pard3b coding downstream 176728 1618820 ~ 1738935 (-)
en1b en1,eng1b,LOC108258368,LOC108437127,LOC102785987,LOC103355596 coding downstream 397292 1512321 ~ 1518371 (-)
LOC113535431 LOC108258373 coding downstream 549757 1355723 ~ 1365906 (-)
slc5a10 slc5a10 coding downstream 669622 1204764 ~ 1246041 (-)
LOC117596168 NA coding upstream 319346 2256421 ~ 2259148 (-)
LOC113535651 NA coding upstream 324214 2261289 ~ 2271653 (-)
LOC113535598 LOC108258873 coding upstream 345716 2282791 ~ 2331670 (-)
LOC113535761 NA coding upstream 410153 2347228 ~ 2350989 (-)
LOC113535442 LOC108258868,LOC108258869 coding upstream 563955 2501030 ~ 2515018 (-)
G369641 NA non-coding downstream 26289 1888504 ~ 1889374 (-)
G369618 NA non-coding downstream 61010 1854440 ~ 1854653 (-)
G369617 NA non-coding downstream 61881 1853349 ~ 1853782 (-)
G369573 NA non-coding downstream 92159 1785553 ~ 1823504 (-)
G369663 NA non-coding upstream 81640 2018715 ~ 2021315 (-)
LOC117596194 NA non-coding upstream 178503 2115578 ~ 2144451 (-)
LOC117596130 NA non-coding upstream 249571 2186646 ~ 2187942 (-)
LOC117596129 NA non-coding upstream 261950 2199025 ~ 2245158 (-)
LOC113535806 NA non-coding upstream 406038 2343113 ~ 2345533 (-)
mdh1b mdh1b other downstream 82934 1824204 ~ 1832729 (-)
G369586 NA other downstream 120439 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 303997 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 638850 1276021 ~ 1276813 (-)
G369125 actb other downstream 999980 911553 ~ 915683 (-)
LOC113535702 mx1 other upstream 629682 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 906137 2843212 ~ 2853211 (-)
G370658 NA other upstream 2906254 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 3451829 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 3592917 5529992 ~ 5547032 (-)

Expression


Co-expression Network