LOC113535761


Basic Information

Item Value
gene id LOC113535761
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2347228 ~ 2350989 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929274.2
TACAGCCACATATGGTCCAGAGAAGCAAACAGGAGTACATTAAGAGAATCAAATACGGAAAACAACAAACATTCTGaaatgGATCAGAAAGGCATTTCTATAATCTTGTTTTACTCAGTTATATATGGTGTAGGAGCATATATTCCTCATCGCTATCACTTTGTGAATGAGAATAAAAACTGGAGTGAAGCTCAGACTTACTGCAGAGAGAAATACACTGATCTCGCCACCATCAGCAACATGGAAGAGATGAAGAAGCTGAATCACACACTGAAGAAGGAAACTGCAGAGCAAGCTTGGATCGGTCTACAGAGAGAGGGCACTGGGGAATGGCAGTGGTCTCTGGCAGACCAAACTTTCTACAGAGACGGAGACACTTACAGAAACTGGAATAATGAAGACAAAACGAAAATTGGAGAGAACGAGTTCTGTTCTGACATGGCAAAGGATGGTTCTTGGTATAATTGCAGATGTAATGTGACATTACCTTTTGTGTGTTATGAAGaaaagGACACAGGCACTGATGAATACAAAATCATTAATGAGAGTAAGACCTGGCTTGATGCTCAGATCTACTGCAGAGGGAAACACACTGATCTGGCCAGTGTGAGGAATCAAAGTGAGAATGAGAAAATCAAGGGACACATTGACAAGGTAGTGGGTGCTGGTGTTTGGATTGGTCTGTTTTATGACTTCTGGAAGTGGTCAGATGGGAGTATTTCCTCATTCAGACACTGGAGATCTGACCAACTGAATAATACACATGGTACTGAGAGGTGTGCTGCAGTGAATATGACTGAGAAAAAGGAGAATCTCACCTGGAATGATGAGAACTGCAACAAAAGCTTTCCATTTATCTGCCATGAGAATAAGCTGATCCTGATTAAGCAGAATCTGACCTGGAAAGAAGCTCTGAGATACTGCAGGAACCATCATTACAACCTGGTCTCAGTGCGCACTGAGGAGATGCAGCTCTGGGTGAAGGAAGTGGCTCGAAACACCTCCACTGAACACGTGTGGCTCGGCCTGCGTCACACCTGCGCTCTGGGCTTCTGGTACTGGGTGACTGGAGAGATGATCTGCTACCAGGACTGGGCCCCGGGGAATGGGACAGGGTTCGAAGACTGCAGCAGTGAGGAGAGAACCGGAGCAGTGCAGTCTGGAGGAGAGCAGCAGTGGATCAGCCTGCCTCAGAGCTACACACTCAACTGCATCTGCTCTACCTATGAAGGCTGAAGACAAGTTGTGGTCCATCATCTGTATCCACCATCAGCTGATCTACACCaatatctcatttttattttttttataaacattattaatatattctATCCAAATGTTTAATCCTATATTTACACCATAtatcatggattttttttttcattttacgtATGTTCATGCAAGTTGCACTCACTATGTTATATCTGTTTTCTTCATTAATAGAAGGGGGTTTGAGGTAAACAAGATGAAATGCATTTATATCtttcatactgtatgttcaaGTGTGTTGTCTGCAcacatttgttattattattatgttttttttgaaTAGATAATTAAAGTGTAAGCAGCTTTATAATATTGTAGGTTACACAAGCAtgtagacatacagtataacacCATAAAGTCATAATTACAGGATGTTTATAACaactaaatacatttttctCTCAAAATTGAATGTTTTCATATATGAATagattactgattattttttaaactgtatttttttctaatcaggGGTGGTAGTCTCTCTATACCTGTAATATCAGATAATTTGACTTTTAATACATTAGAATATGGAGTGTAATGAATATTGGAATTATTTTCtccaataaaatga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929274.2 True 1843 mRNA 0.40 7 2347228 2350989

Neighbor

gene id symbol gene type direction distance location
LOC113535598 LOC108258873 coding downstream 15558 2282791 ~ 2331670 (-)
LOC113535651 NA coding downstream 75575 2261289 ~ 2271653 (-)
LOC117596168 NA coding downstream 88080 2256421 ~ 2259148 (-)
klf7a LOC108258322 coding downstream 410153 1915663 ~ 1937075 (-)
LOC113535707 LOC108258365,LOC108437114 coding downstream 437854 1895048 ~ 1909374 (-)
LOC113535442 LOC108258868,LOC108258869 coding upstream 150041 2501030 ~ 2515018 (-)
LOC113535562 LOC108258657 coding upstream 172126 2523115 ~ 2542866 (-)
LOC113535812 mx1 coding upstream 224461 2575450 ~ 2583050 (-)
efnb2b LOC108259076 coding upstream 266637 2617626 ~ 2633096 (-)
cpo LOC108258336,LOC108440461 coding upstream 286346 2637335 ~ 2642686 (-)
LOC113535806 NA non-coding downstream 1695 2343113 ~ 2345533 (-)
LOC117596129 NA non-coding downstream 102070 2199025 ~ 2245158 (-)
LOC117596130 NA non-coding downstream 159286 2186646 ~ 2187942 (-)
LOC117596194 NA non-coding downstream 202777 2115578 ~ 2144451 (-)
G369663 NA non-coding downstream 325913 2018715 ~ 2021315 (-)
G369891 NA non-coding upstream 159767 2510756 ~ 2510962 (-)
G369907 NA non-coding upstream 169509 2520498 ~ 2522127 (-)
G369924 LOC107702554 non-coding upstream 204990 2555979 ~ 2558809 (-)
G369926 NA non-coding upstream 208224 2559213 ~ 2560060 (-)
G369928 pcnp non-coding upstream 209891 2560880 ~ 2562458 (-)
mdh1b mdh1b other downstream 514499 1824204 ~ 1832729 (-)
G369586 NA other downstream 552004 1776319 ~ 1795224 (-)
nrp2a nrp2,LOC107556288,LOC107749808,LOC107750056 other downstream 735562 1538453 ~ 1611666 (-)
G369242 LOC108258881 other downstream 1070415 1276021 ~ 1276813 (-)
G369125 actb other downstream 1431545 911553 ~ 915683 (-)
LOC113535702 mx1 other upstream 215768 2566757 ~ 2574471 (-)
LOC117596167 NA other upstream 492223 2843212 ~ 2853211 (-)
G370658 NA other upstream 2492340 4843329 ~ 4889381 (-)
LOC113537294 NA other upstream 3037915 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 3179003 5529992 ~ 5547032 (-)

Expression


Co-expression Network