spp2 (spp2)


Basic Information

Item Value
gene id spp2
gene name spp2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11539380 ~ 11543697 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931632.2
ATAGAACACAGCCGGAGGAGGGCTGTGGGGATTTAAGGGTAGCGGCAGGTGCTACTGGCCACGAACTCCAGTTTGATTGACAGATGAAGATGAGGTGCTGCGTTCTGCTCGTGCTCTTCCTCCAGTGCCTGGGAGGTTTAGGCCTCCCTCTATTTGAACTGAGTTCTAAAGCAGATGAGGCGCTGCGGATGGCCCTGGACGAGATCAACACTCGTTATGCTCGGCATCACCTCTACAGGGTGTCCAAGGCTACAGTCACAAGAGTTGTACCATTGGGCACAAACATGTATGATATGATGCTGAAATTTGGGATAAGGGAGACGGAATGTCGGAAGGGCTCTGGGATTGACCCTCAGGGCTGCGCCTACCGTAGAGGCTTCTTTGTGTTGGAGGCAGGCTGCCACATCCGAACACGTTTGACTGAGAGACTCACTAATATAATGTCCTTCAAATGCAGCCCCGCACAAAGTTCCAGCTCCGAGTCCAGTGAAGAGGTGTGGACCGGATGGCACTATGATCCAAATCGCCTTGCTCGTAGAGACCCTGTACCTTCGACTGCAACTCCAAGCTCAGGTGTAGCTCCACCAGTACATCCTGGGCGCCGTGGTGACATCAATGTTCATGAAGATTATTTGAGCAACCATCTGGAATAACCACAGCCTTCTAATTTTAACAGTAAAACGTGAGGAATATATGCATACAGACTCTGGAGATTTAAGACTGATTTTGTATAGGTGCAGGGGCTACAAAGTTCTGGAGGTGCTACATAACATACaatattacttaaaaatattttgttaaaaatttatGCTATAAAAATTTCAGTAACATAACCTGTCCACATAGTGGGCTTCCTCTTTgacaaacattaaaataaacagcgTCATCTTGCTATT

Function

symbol description
spp2 Predicted to act upstream of or within bone remodeling. Predicted to be located in extracellular region. Is expressed in cranium.

NR:

description
secreted phosphoprotein 24 precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931632.2 True 896 mRNA 0.47 6 11539380 11543697

Neighbor

gene id symbol gene type direction distance location
trnar-ucu_14 NA coding downstream 66409 11472880 ~ 11472971 (-)
pld6 pld6 coding downstream 67837 11467404 ~ 11471543 (-)
rab3da rab3da,LOC108258507,LOC108435977,LOC103040938,LOC107757002,LOC107747429,LOC107675349,LOC107569532 coding downstream 74758 11448379 ~ 11464622 (-)
tspan34 NA coding downstream 93286 11434514 ~ 11446094 (-)
psmb13a LOC108258499,LOC108433729,LOC103024985,LOC106569958,LOC107104818 coding downstream 129266 11404116 ~ 11410114 (-)
alg11 alg11,LOC107556718,LOC107705036,LOC107588826 coding upstream 3277 11546974 ~ 11552722 (-)
march4l march4,LOC108258493,LOC106596293,LOC107567720,LOC107663921,LOC107722703,LOC107558390 coding upstream 123212 11666909 ~ 11690520 (-)
vps8 vps8,LOC107699090,LOC107719737 coding upstream 226149 11769846 ~ 11866324 (-)
igf2bp2b igf2bp2,LOC108435967,LOC107699092,LOC107704342,LOC107596519 coding upstream 347977 11891674 ~ 11937127 (-)
LOC117596169 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393,LOC107749880 coding upstream 397455 11941152 ~ 11943095 (-)
G374230 ddx39aa,ddx39ab,LOC100304672,LOC107603018,LOC107692155,LOC105901571 non-coding downstream 178959 11358843 ~ 11360421 (-)
G374198 grin2b,grin2bb,LOC108258482,LOC107603025,LOC107551907,LOC107676879 non-coding downstream 296543 11238241 ~ 11242837 (-)
G374196 LOC108258482,LOC107676879,LOC107551907,LOC107603025,LOC107692185 non-coding downstream 301949 11237062 ~ 11237431 (-)
G374111 NA non-coding downstream 391707 11147454 ~ 11147673 (-)
G374105 NA non-coding downstream 399569 11139183 ~ 11139811 (-)
G374370 NA non-coding upstream 50269 11593966 ~ 11594981 (-)
G374371 NA non-coding upstream 51495 11595192 ~ 11596239 (-)
G374442 NA non-coding upstream 125296 11668993 ~ 11669256 (-)
G374495 c26h3orf70 non-coding upstream 208877 11752574 ~ 11755115 (-)
G374657 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393 non-coding upstream 390837 11934534 ~ 11943075 (-)
lipt1 lipt1 other downstream 666824 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 1104013 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 1620601 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 2928539 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 3106942 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 535194 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 1081354 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 1764016 13307713 ~ 13320530 (-)
G375428 NA other upstream 1895522 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 2428639 13972336 ~ 13980251 (-)

Expression


Co-expression Network