psmb9a (psmb9-a,psmb9-b,psmb9a,LOC108258508,LOC108433730,LOC103024362)


Basic Information

Item Value
gene id psmb9a
gene name psmb9-a,psmb9-b,psmb9a,LOC108258508,LOC108433730,LOC103024362
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11380912 ~ 11384271 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931645.2
ACAGGCGCAAGTTACTTTCGTTTTCAACTCGCGGAACGAAAGGGGAAACAACGAACAGCTCCTGAGGAAAGCTGTAGGCCTTGCTATTGTCACGGGCGTTTTTAAAAACAgggcttaattttttttaaagctttaaacgTGTTGTCTTCGAGTGGTGTAGTTTCTCAGCTTCGCCTCATATCGAGTTTCTGTTCTGCTTGGCGTCGGGGCGCGCGCgcggtgcgtgtgtgtctgtgtgtgtctgtgtgcgtctCTCTTTctacgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttctgcagtgaCTGTCGGTAAACTTCGGTCATTTCCACCGGTTTTAGCTGCTATAGTTGTAGGTGAGCTGATTTAAGGCTAAAGCAAGCATCATAATGTTGGAGGAATCATCATCGCAACCAGGCTGGCTGAGTGAAGAAGTCAAAACCGGGACTACAATCATAGCGATTGCGTTTGCAGGCGGAGTTGTTCTCGGCTCCGACTCACGAGTGTCTGCTGGGGAGTCAGTGGTGAATCGAGTTATGAACAAACTTTCTCAACTACATGACAAGATCTACTGTGCTCTGTCCGGGTCAGCTGCTGATGCCCAGACCATCGCTGAGATAGTCAACTACCAACTGGATGTGCACAGTATTGAGGTGGGAGAAGACCCCCTGGTTCGCTCAGCTGCCACATTAGTGAAGAACATTTCCTACAAGTACAAAGAGGAACTATCTGCACATCTGATTGTTGCAGGTTGGGATAAAAGAGGTGGGGGACAGgTGTATGTGACATTGGACGGCCTTCTATCTCAGCAGCCGTTTGCTATTGGCGGCTCTGGTAGTTCATACATCTATGGGTTTGTTGATGCGGAATACCGGAAAGGCATGACACGAAAAGAATCCCAGAAGTTTGTTGTAGatgCACTGACACTTGCTATGAGCAGAGATGGTTCTAGCGGAGGCGTGGCTTACCTTGTTACCATTGATGAAAAGGGAGCGGAGGAgaagtgcattctgggaaatgaaCTACCTACATTTTTTGATGAGTAACAGTGGCAAAACAATGTTGCTGGGTTTGGTAAACGCTGCATTTATCTCTTTATTAGGCACACAGGCCATGTCGGTTAACCCTGTAACAATCTTTCCATAGACAATTTTGTACTAATCTTCCTTATACCCTTTACATTCAGTTACTTTTATGTCCAGAAGATTGCTGTTTGGAGATTATTGGCTGATAGACTGAATAAACTGGAGATTATTGGCTGATAGACTGAATGCAGCAGTAACACTGAGGTGTTTCAAAACCCAAGCAATGCTGTTGAACTTGGTCCACTTGTGTCAGTtccacacacactattatgCCAGTGTCACTGCTGCACTGAAATTGGTCCATCACTAAAATTATCTGATCAGTCAGTATGTCTAATAAATTCAGCTACATTTTACTTTGCCCTAATGCACTGGAAGTGTGTTCATGTTGACATTAAGAttcattagttttaatttaaGTGTCACAAATAAATGCAGTTCCACAAACATCTCA

Function

symbol description
psmb9a Predicted to enable threonine-type endopeptidase activity. Acts upstream of or within cellular response to lipopolysaccharide; response to nitrogen compound; and response to organic cyclic compound. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome core complex, beta-subunit complex. Human ortholog(s) of this gene implicated in autoimmune disease (multiple); lymphoma; and renal cell carcinoma. Orthologous to human PSMB9 (proteasome 20S subunit beta 9).

NR:

description
proteasome subunit beta type-9

GO:

id name namespace
GO:0002376 immune system process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
K02741 PSMB9, LMP2; 20S proteasome subunit beta 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931645.2 True 1547 mRNA 0.45 6 11380912 11384271

Neighbor

gene id symbol gene type direction distance location
LOC113537638 LOC108258487,LOC108258488 coding downstream 1109 11374505 ~ 11379803 (-)
LOC113537567 LOC108258496,LOC108428189 coding downstream 10857 11361426 ~ 11370055 (-)
si:ch211-239f4.1 evi5l,LOC108258486,LOC108428244,LOC107676895,LOC107718810,LOC107692153 coding downstream 28531 11312765 ~ 11352381 (-)
LOC113537574 LOC108258505,LOC108439141,LOC107376145,LOC106957017,LOC103468358,LOC106517844,LOC102204789,LOC106930820,LOC102799753,LOC101476653,LOC102083067 coding downstream 72426 11302783 ~ 11308486 (-)
emp1 emp1,LOC108258510,LOC107718756,LOC107692152,LOC107603024,LOC107676894 coding downstream 100784 11275262 ~ 11280128 (-)
psmb12 pb9la,lmp2/d,LOC108433731,LOC103024673,LOC106569959,LOC106588399 coding upstream 1365 11385636 ~ 11391202 (-)
LOC113537507 psmb8a,psmb8,LOC108258500,LOC108258501,LOC107694758,LOC107549856,LOC107554342 coding upstream 15351 11399622 ~ 11402573 (-)
psmb13a LOC108258499,LOC108433729,LOC103024985,LOC106569958,LOC107104818 coding upstream 19845 11404116 ~ 11410114 (-)
tspan34 NA coding upstream 50243 11434514 ~ 11446094 (-)
rab3da rab3da,LOC108258507,LOC108435977,LOC103040938,LOC107757002,LOC107747429,LOC107675349,LOC107569532 coding upstream 64108 11448379 ~ 11464622 (-)
G374230 ddx39aa,ddx39ab,LOC100304672,LOC107603018,LOC107692155,LOC105901571 non-coding downstream 20491 11358843 ~ 11360421 (-)
G374198 grin2b,grin2bb,LOC108258482,LOC107603025,LOC107551907,LOC107676879 non-coding downstream 138075 11238241 ~ 11242837 (-)
G374196 LOC108258482,LOC107676879,LOC107551907,LOC107603025,LOC107692185 non-coding downstream 143481 11237062 ~ 11237431 (-)
G374111 NA non-coding downstream 233239 11147454 ~ 11147673 (-)
G374105 NA non-coding downstream 241101 11139183 ~ 11139811 (-)
G374370 NA non-coding upstream 209695 11593966 ~ 11594981 (-)
G374371 NA non-coding upstream 210921 11595192 ~ 11596239 (-)
G374442 NA non-coding upstream 284722 11668993 ~ 11669256 (-)
G374495 c26h3orf70 non-coding upstream 368303 11752574 ~ 11755115 (-)
G374657 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393 non-coding upstream 550263 11934534 ~ 11943075 (-)
lipt1 lipt1 other downstream 508356 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 945545 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 1462133 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 2770071 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 2948474 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 694620 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 1240780 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 1923442 13307713 ~ 13320530 (-)
G375428 NA other upstream 2054948 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 2588065 13972336 ~ 13980251 (-)

Expression


Co-expression Network