lrrc58a (LOC108258943,LOC108428195,LOC107566531)


Basic Information

Item Value
gene id lrrc58a
gene name LOC108258943,LOC108428195,LOC107566531
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 9931449 ~ 9937173 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931646.2
CAAAGATCGTGCCCGACGTCACGCGCTGCATATAAAGCGCCTGAGTGTGCGCTCGTGCCTCAGTTCCAGACTGTAACAGAGCTGCACATCTGGCCAGATTTCTCCTGACTTTCCCGAGCAGAAGCTCGCGCGTATCAACAAACCGCTGCACCTGCCCAGCTGTGGTGTTACGATGTAGCCGCTGTATGATACACTAACAGCTGTCCTTTTTACTGCACGCGGAACCATGGAGTCTTTCCCCAGCGTCAGTGAGGGAAGCCCGGTTTTAAACCTGTCGCGTCTGCAGCTGGCCGACTTGAACCTGGAGCACATCACGGAGCCTCAGCGCAAACAGATCCAGCAGCTTCACCTTACACACAACAGCCTCACGTTTTTCCCCACGACACTATGCATGTTTTCCAGCCTGGAATACCTGGACATGAGCAACAACGCGCTCAGTGTTTTCCCCGAGGACATTCTGCAACTCACTAAACTAAAGACGCTGGTCGCCAAAAACAACCAGCTGGACGAAGCGTCGTTTCCGAAGCAGTTCGGTTCGATGCCCATCGAGACGCTGAACTTAAGCGGGAACCGATTTAGAGAAATACCGAAGCAGCTCCTGGAACTGAGCCGACTGCAGTCCCTGTCCATGGGaggaaacagattaaaaagcatCCCAGCAGAAATAGGCAACCTCACCAGCCTGGAGATGTTGTATCTGGGAGGGAATCTGATCTCTTTCATTCCTCCTGAGTTGGCTAACCTGCGCTGCCTCAGGTACCTGGTGCTATGTGACAACTGTATCCAGAGCATTCCACCTGAGCTACACAGACTGCACTCCTTGCTGTCTCTCAGTCTCCATAATAACCTCCTGACATTTCTACCACGTGAGATCCTCAGCCTCGTGCACCTACAGGAGCTCAGTCTCCGCGGTAACCCTCTGGTAGTGCGCTTCATCAAGGACATGACCAATGAGCCCCCGTCCTTGCTTGAGTTGGCGGGACGGACCATTAAATCCCGGAACCTTCCGTACCTCATGAGCGACCTCCCAGCCAACCTGTGCCGCTACCTGGACTCGGCCAGCAAGTGTCCCAACCCCAAATGTGCAGGTGTATACTTTGACTCACGAGTGCGCCACATCAAGTTTGTCGACTTCTGTGGAAAGTTCCGCCTACCCCTCATGCAATACCTCTGCTCCCCTGAATGTAGCTCTCCCTGCAGCTCCAACCCACAGAGTGATGCCGAATCAGAGGATGAGAGTAGTGTGCCGGCAGACAGACTGCAGAAGGTGCTGCTGGGATAGCACAGTCCTCTTCTACAattcttaaaatatattttttgtaagggaaaaaaaatagtcgTGGATGAATGATCAACACTGTGAGCATGTCCATGGTCGCCCATTATTGGGCTAAAGCCCATTAAATGATGTGCTCTACTATTGGTCAGTTCAAGTCTGCTTGATTTGATCCCTAAAATATGTGTATTTCTTCTTGGTCTGTATTACATTTGATGGCTTGTTTATGACCAAAA

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 58-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931646.2 True 1512 mRNA 0.51 4 9931449 9937173

Neighbor

gene id symbol gene type direction distance location
stn1 obfc1 coding downstream 3472 9919822 ~ 9927977 (-)
sh3pxd2aa sh3pxd2a coding downstream 107741 9807172 ~ 9823708 (-)
cfap58 cfap58 coding downstream 225623 9597014 ~ 9705826 (-)
sorcs3 LOC108258285,LOC108443686,LOC107746061,LOC107566138,LOC107684317,LOC105891017,LOC103472494,LOC106951909 coding downstream 384192 9306733 ~ 9547257 (-)
caly caly,LOC108258305,LOC108434710,LOC103039857,LOC105891014 coding downstream 1083285 8835487 ~ 8848164 (-)
fstl1a LOC108258944,LOC108428196,LOC103028151,LOC106575075,LOC105019681 coding upstream 2123 9939296 ~ 9961370 (-)
gja8b gja8,cx44.1,LOC108258942,LOC107566539 coding upstream 31278 9968451 ~ 9970159 (-)
bcl9 bcl9,LOC107676875,LOC107746285 coding upstream 56528 9993701 ~ 10043255 (-)
morc3b LOC108258289 coding upstream 167359 10104532 ~ 10116972 (-)
cbr1 cbr1,LOC108428204,LOC107746284 coding upstream 183369 10120542 ~ 10123973 (-)
G373327 NA non-coding downstream 99124 9831607 ~ 9832325 (-)
G373317 NA non-coding downstream 105756 9825461 ~ 9825693 (-)
G373303 neurl1,neurl1aa,LOC107676877,LOC107746293,LOC107746052 non-coding downstream 131539 9793369 ~ 9799910 (-)
G373316 NA non-coding downstream 138828 9792282 ~ 9792621 (-)
G373310 neurl1 non-coding downstream 144588 9785983 ~ 9786861 (-)
G373398 NA non-coding upstream 25249 9962422 ~ 9964543 (-)
G373629 NA non-coding upstream 85364 10022537 ~ 10024885 (-)
G373649 NA non-coding upstream 147266 10084439 ~ 10084737 (-)
G373656 setd4 non-coding upstream 189652 10126825 ~ 10127889 (-)
G373657 setd4 non-coding upstream 191636 10128809 ~ 10129630 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 12670 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 1320608 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 1499011 8429562 ~ 8432438 (-)
timmdc1 timmdc1 other downstream 1602423 8320868 ~ 8329026 (-)
LOC113537489 NA other downstream 1664177 8261435 ~ 8267272 (-)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 484979 10422152 ~ 10435367 (-)
lipt1 lipt1 other upstream 934051 10871224 ~ 10872556 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 2141718 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 2687878 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 3370540 13307713 ~ 13320530 (-)

Expression


Co-expression Network