jam2a (jam2)


Basic Information

Item Value
gene id jam2a
gene name jam2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5896336 ~ 5908867 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931653.2
CTGGGACAGGCTAGAGGAGAAAGCACAAGTCGTGCCTCGGATTAAAGGGACCTGTctggtgtatacacacacacacacctgtttggAGAAAGGAAAACATTATAAACTCTCGGACAGACTCTGGTTATCCTACAAAGCTTCAAGAGCTCCTGTACTCCTCTGGCAACACACTTTTAAATCAGGATAAAATGAAGATTGCTGTTTTTCTGCCAGTACTTTTACAGCTGTTAATACAGAgtGTTCCTGTTGCTCCTGTCACAGTGACCACCTCCAGCCCCATAGTAAAAGTGGAGGAATACTCAGAGGCCAAGCTTTCCTGTGAGTTTAAGACAGAGAAAGATCAAAGTCCTCGCATCGAGTGGAAGAAAAAGGATAAGGACACCTCCTTTGTCTACTTTCATGGCAACTTCACAGGACCTTTTGTGGGACGTGCAAAGATTGAAGGAGCAACAATAACATTACAGAAGGTGACACAGAAGGATGCTGGAGAATATCGCTGTGAGATCAGTGCTTCTGGTGACACAATCCAGCTGGGAGAGACCAATATCACTCTAAAAGTGTTGGTACCTCCACACATCCCGACCTGTGAGATCCCGAGCTCTGCGCTGACAGGATCTGTAGTGGAGCTGCGCTGTAGGGACCAGTACAGTATTCCTCCGGCAAGCTACACCTGGTACAAAGACAAGAAGCCTGTCTTTCCACCGCGCCATACCAATGCCTCTTACTCTGTCAACAAGGAGACAGGCATTCTTACATTTCATACAGTTACCATAGCCGATGCAGGACTGTATCACTGTGAGGCCAACAATGGGGTTGGAAAGTCAAAGAGCTGTGTAGGAAATCACATGACAATTGATGATCTAAATGTTACAGGGATCATAGCTGGGATTGTAATTTTGTGCCTGATCATAACTTTATGCACTCTTGGGGTCTGTTATGCCCACCGACAAGGCTACTTTAACCGACACAGAGGAAGGTCATTCTGGATCCAACAGTGTCATGGAGTGGCTCACATCAGCAGCCAGAACCTCAACAGATCAGAGGACATccCCCATGCTGGTTATGGACCTCCTTCACAAAATGTTCAAgacttcaaacacacacagtcatttatGCTGTAAGAAGCTTTAAACCTTCCTCAAATCGAAAACCCCCATGCAGCATTTACAGACCCTGGAACTGGACACTGGTGCTTAACTCTGTTACTGTGGATGTGAACGGGacaaaaaaacagcctttttttctttcatgaacGACTGTTATGGGATATCTGTCCTCTAAAAGGACTTGGTGTATTAGTGCTGTGTGAAAATCACTGAAATGTATTAGACCACTGCCCTGCTGTGTTCTTTGTCCACTTCAGCCCTCTAGTGGATATAGTATGCACACAAACACGATCACAGCTGAAATGTGCGACACTTTGGAGTTTTTTTAAAGAGAGTGAGCCTCCCTAAAACATATTATAAAGCTCACGATAGTGCAGAATTTATGACTTGACGTTCCCTGTGCCTTGCTAAAGGAGCACCACTAGGATGCTAGATTCACTGGTTAGCAGTTTAACTTGCATGAAGAAACAACTTGGGCACTAGCCAAGAATTGAGCTTTCTAGAATGCATCCCATGAGTGAAACAATCTTTTATTGTATGTAATTAagactgtatttgtatttggaaCTGTGCCTTTTCATTTTAACTGTACAGTAACTGTTTTGGTTGAAATGCATGAATGATTTGCTGTATATTTTATCAgcattaaaagctttttttttaatgaaa
>XM_026931654.2
CTGGGACAGGCTAGAGGAGAAAGCACAAGTCGTGCCTCGGATTAAAGGGACCTGTctggtgtatacacacacacacacctgtttggAGAAAGGAAAACATTATAAACTCTCGGACAGACTCTGGTTATCCTACAAAGCTTCAAGAGCTCCTGTACTCCTCTGGCAACACACTTTTAAATCAGGATAAAATGAAGATTGCTGTTTTTCTGCCAGTACTTTTACAGCTGTTAATACAGAgtGTTCCTGTTGCTCCTGTCACAGTGACCACCTCCAGCCCCATAGTAAAAGTGGAGGAATACTCAGAGGCCAAGCTTTCCTGTGAGTTTAAGACAGAGAAAGATCAAAGTCCTCGCATCGAGTGGAAGAAAAAGGATAAGGACACCTCCTTTGTCTACTTTCATGGCAACTTCACAGGACCTTTTGTGGGACGTGCAAAGATTGAAGGAGCAACAATAACATTACAGAAGGTGACACAGAAGGATGCTGGAGAATATCGCTGTGAGATCAGTGCTTCTGGTGACACAATCCAGCTGGGAGAGACCAATATCACTCTAAAAGTGTTGGTACCTCCACACATCCCGACCTGTGAGATCCCGAGCTCTGCGCTGACAGGATCTGTAGTGGAGCTGCGCTGTAGGGACCAGTACAGTATTCCTCCGGCAAGCTACACCTGGTACAAAGACAAGAAGCCTGTCTTTCCACCGCGCCATACCAATGCCTCTTACTCTGTCAACAAGGAGACAGGCATTCTTACATTTCATACAGTTACCATAGCCGATGCAGGACTGTATCACTGTGAGGCCAACAATGGGGTTGGAAAGTCAAAGAGCTGTGTAGGAAATCACATGACAATTGATGATCTAAATGTTACAGGGATCATAGCTGGGATTGTAATTTTGTGCCTGATCATAACTTTATGCACTCTTGGGGTCTGTTATGCCCACCGACAAGGCTACTTTAACCGACACAGAGGAAGccCCCATGCTGGTTATGGACCTCCTTCACAAAATGTTCAAgacttcaaacacacacagtcatttatGCTGTAAGAAGCTTTAAACCTTCCTCAAATCGAAAACCCCCATGCAGCATTTACAGACCCTGGAACTGGACACTGGTGCTTAACTCTGTTACTGTGGATGTGAACGGGacaaaaaaacagcctttttttctttcatgaacGACTGTTATGGGATATCTGTCCTCTAAAAGGACTTGGTGTATTAGTGCTGTGTGAAAATCACTGAAATGTATTAGACCACTGCCCTGCTGTGTTCTTTGTCCACTTCAGCCCTCTAGTGGATATAGTATGCACACAAACACGATCACAGCTGAAATGTGCGACACTTTGGAGTTTTTTTAAAGAGAGTGAGCCTCCCTAAAACATATTATAAAGCTCACGATAGTGCAGAATTTATGACTTGACGTTCCCTGTGCCTTGCTAAAGGAGCACCACTAGGATGCTAGATTCACTGGTTAGCAGTTTAACTTGCATGAAGAAACAACTTGGGCACTAGCCAAGAATTGAGCTTTCTAGAATGCATCCCATGAGTGAAACAATCTTTTATTGTATGTAATTAagactgtatttgtatttggaaCTGTGCCTTTTCATTTTAACTGTACAGTAACTGTTTTGGTTGAAATGCATGAATGATTTGCTGTATATTTTATCAgcattaaaagctttttttttaatgaaa

Function

symbol description
jam2 Enables integrin binding activity. Involved in several processes, including hematopoietic stem cell migration to bone marrow; leukocyte tethering or rolling; and lymphocyte aggregation. Located in cell surface; cell-cell contact zone; and plasma membrane. Is integral component of plasma membrane. Part of protein complex involved in cell adhesion. Implicated in basal ganglia calcification.

NR:

description
junctional adhesion molecule B

GO:

id name namespace
GO:0007520 myoblast fusion biological_process
GO:0005515 protein binding molecular_function

KEGG:

id description
K06735 JAM2, CD322; junctional adhesion molecule 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931653.2 True 1775 mRNA 0.43 11 5896336 5908867
XM_026931654.2 False 1703 mRNA 0.43 10 5896336 5908867

Neighbor

gene id symbol gene type direction distance location
n6amt1 n6amt1,LOC107563652 coding downstream 300241 5589772 ~ 5596095 (-)
wu:fa56d06 LOC108258903 coding downstream 339246 5549553 ~ 5557090 (-)
urp2 LOC108258299 coding downstream 483563 5409611 ~ 5412773 (-)
LOC113537353 atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265 coding downstream 555815 5331920 ~ 5340521 (-)
LOC113537467 atp1a1a.4,LOC108258577,LOC108429867,LOC108429865,LOC108429869,LOC108258578,LOC108258576,LOC108429866,LOC107717913,LOC107653679 coding downstream 580141 5288685 ~ 5316195 (-)
mrpl39 mrpl39 coding upstream 5092 5913959 ~ 5920199 (-)
mrpl16 mrpl16 coding upstream 54885 5963752 ~ 5969065 (-)
txnl4b txnl4b coding upstream 62173 5971040 ~ 5973439 (-)
blzf1 blzf1 coding upstream 67510 5976377 ~ 5983797 (-)
LOC113537602 tmem255b coding upstream 227640 6136507 ~ 6160962 (-)
G371121 NA non-coding downstream 648 5892326 ~ 5895688 (-)
LOC117596178 NA non-coding downstream 4539 5886846 ~ 5891797 (-)
G371117 NA non-coding downstream 10724 5880476 ~ 5885612 (-)
LOC117596170 NA non-coding downstream 377956 5510716 ~ 5518380 (-)
G370942 NA non-coding downstream 387967 5508102 ~ 5508369 (-)
G371147 ercc5 non-coding upstream 84622 5993489 ~ 5994747 (-)
G371152 NA non-coding upstream 89136 5998003 ~ 5998159 (-)
G371153 NA non-coding upstream 89981 5998848 ~ 5999474 (-)
G371135 NA non-coding upstream 92312 6001179 ~ 6001613 (-)
G371134 mettl21c,LOC108429839 non-coding upstream 92971 6001838 ~ 6004790 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 349304 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 501324 5388904 ~ 5395012 (-)
G370658 NA other downstream 1006955 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 3043125 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 3321865 2566757 ~ 2574471 (-)
LOC113537623 NA other upstream 33172 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 106859 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 449772 6358639 ~ 6363203 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 961699 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 1149968 7058835 ~ 7068531 (-)

Expression


Co-expression Network