cldng (LOC108258891)


Basic Information

Item Value
gene id cldng
gene name LOC108258891
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13476472 ~ 13478258 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931655.2
TGGACCTATAAAAGCTGTGACAGCAGGACGCAAGTTTTGTGTATTGTGGGTTTAGTGTGCTAATGGTGTTAGTTTAGTGCTTACCTTCAGGAACAGCAGCTTTTTGGTCACCTAAGGCTTTTCTTATGATTTTATTTGCTGGTTTTTATTTCTATTGCAAACGCGTCAAAGCTTCCAGATTGAATCCATCTCTGCCCAAAAGCTGCCATGTCTGCAGGGCTACAGATGCTTGGTACCACACTGGGGGTGCTGGGCTGGCTGGGAACCATCTTGGCCTGCGCTCTCCCACTATGGCGCGTGACTGCTTTCATCGGCAACAACATTGTGACGGCACAGGTCGTCTGGGAGGGTTTGTGGATGACCTGTGTGGTGCAGAGCACTGGCCAAATGCAGTGCAAGGTTTATGACTCTATGCTGGCTCTGTCTTCAGACCTTCAAGCCTCTCGGGCCATTCTCGTCATCGCTCCATTGGTCGCCCTGGTGGCCATACTTGCTAGCATAGCTGGAGGCAAGTGCACAAACTGCTTGGACCAAAGCACTGCCAAGGCCAGGGTGGCTACAGCAGCTGGGGTTTTCTTTCTCATCGCAGGGCTTCTGAGTCTCGTGCCGCCCAGCTGGATGGCAAACGCAGTGATCAGAGACTTCTACAATCCGTTGGTGGCCCAGTCACAAAAGAGGGAGCTGGGGGCATCCATCTTTATCTGTTGGGGGGCTGCTGTGCTCATGGTGATTGGCGGAGGGCTTCTGTGCACCTCTTGGCCCAGCAGTAGAGGAAAGCAAATGGGCCACTACAAACCAGCATCTCAAACCAGTAGAGAGCGTGCTGCTTATGTCTGAGATTATGCTCATCGCTGATCTGTCATGTCTTTTTAAATAAGtgtatgatttttatttctgtaaataaaactgttttatcTTGTTC

Function

NR:

description
PREDICTED: claudin-like protein ZF-A9 isoform X1

GO:

id name namespace
GO:0016338 calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042802 identical protein binding molecular_function
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931655.2 True 922 mRNA 0.50 2 13476472 13478258

Neighbor

gene id symbol gene type direction distance location
creb1a creb1b,LOC108258958,LOC107757658,LOC107714305,LOC107552236,LOC107691602 coding downstream 49318 13417325 ~ 13427154 (-)
cd99 NA coding downstream 127638 13321263 ~ 13348834 (-)
trnar-ucu_18 NA coding downstream 148329 13328052 ~ 13328143 (-)
trnar-ucu_17 NA coding downstream 150388 13325993 ~ 13326084 (-)
trnar-ucu_16 NA coding downstream 150864 13325517 ~ 13325608 (-)
lmo7b LOC108259086,LOC108437774 coding upstream 389430 13867688 ~ 13902247 (-)
tpt1 tpt1,LOC107598740,LOC107691594 coding upstream 558172 14036430 ~ 14042668 (-)
LOC113537775 NA coding upstream 559473 14037731 ~ 14037862 (-)
LOC113537774 NA coding upstream 560270 14038528 ~ 14038598 (-)
LOC113537776 NA coding upstream 560596 14038854 ~ 14038986 (-)
G375420 NA non-coding downstream 59376 13416822 ~ 13417096 (-)
LOC113537738 NA non-coding downstream 75047 13386832 ~ 13401425 (-)
G375329 NA non-coding downstream 204851 13267882 ~ 13271621 (-)
G375141 NA non-coding downstream 643118 12832876 ~ 12833354 (-)
G375121 NA non-coding downstream 733952 12742320 ~ 12742520 (-)
G375455 NA non-coding upstream 20385 13498643 ~ 13505565 (-)
LOC117596174 NA non-coding upstream 26046 13504304 ~ 13507133 (-)
G375466 NA non-coding upstream 42305 13520563 ~ 13520923 (-)
LOC117596119 NA non-coding upstream 350923 13829181 ~ 13830571 (-)
G375614 LOC108259021,LOC107655163,LOC107580539 non-coding upstream 354210 13832468 ~ 13834980 (-)
G375428 NA other downstream 36937 13439219 ~ 13439535 (-)
gyg2 gyg2 other downstream 155942 13307713 ~ 13320530 (-)
LOC113537246 NA other downstream 846069 12625051 ~ 12630403 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 1392423 12078891 ~ 12084049 (-)
lipt1 lipt1 other downstream 2603916 10871224 ~ 10872556 (-)
klf5a LOC108259069 other upstream 494078 13972336 ~ 13980251 (-)
pibf1 pibf1 other upstream 504487 13982745 ~ 14016151 (-)
G375826 NA other upstream 549036 14027294 ~ 14030879 (-)
rnf11a rnf11a,crgm2,LOC108259033,LOC107757048,LOC108441179,LOC103044796,LOC107694828,LOC107583209,LOC108258879,LOC108260578,LOC108260581,LOC108260584,LOC108260582,LOC108280851,LOC108260580,LOC108260664,LOC108260583 other upstream 627948 14106206 ~ 14180614 (-)
dand5 LOC108258523 other upstream 796069 14274327 ~ 14276537 (-)

Expression


Co-expression Network