eed (eed)


Basic Information

Item Value
gene id eed
gene name eed
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6668223 ~ 6675921 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931661.2
CAGTTTCATGAACACATCCCTTTTAGCACGTCCCTTTTAAACGTTGCTCGTGCACAGAGCTCCATCTAGTGTACGAGGATTTCTAACCGCGTGAACCCTAAATCGCAGCTTTTTACAAGCTTAGTGCACTATCTTAGACGTAGAAATCATCATTTCATGCCCTATGCAGTGCTCTAGTATGCGGAGCGCGTAGAGGATTGGGAGTTAGCCGGAGAGTCGTTTTTGCGGCAGTGCGCGCCTGGTTTCCGGCAGTGAGGCCGCTGAGGATGAGGGGGAAGATGTCCGAGGCGGGAAACGACATCATGCCGGCAAAAAAGCAGAAACTGAGCAGCGATGAAAACAGCAACCCTGACCTTTCCGGGGATGAAAATGACGATGCTGTCAGCATTGAGAGCGGAACGAACGCCGAGCGGCCCGACACCCCTACAAACACGGCTAGTGCCCCGGGCAGGAAGAGCTGGGGCAAGGGCAAGTGGAAGTCAAAGAAATGCAAATACTCCTTCAAGTGTGTTAACAGCCTGAGGGAGGACCATGGCCAGCCTTTGTTTGGTGTCCAGTTCAATTGGCACAGTAAGGAGGGCGACCCGCTCGTCTTCGCAACAGTGGGAAGCAACAGAGTCACCTTATATGAATGTCATTCCCAAGGAGAGATCCGGCTCCTGCAGTCTTACGTAGATGCAGATGCAGATGAGAACTTCTACACCTGCGCTTGGACGTATGACACCAGCACCAGTCACCCTCTGTTAGCGGTGGCTGGCTCCCGCGGCATCATCCGCATCATCAACCACATTACTATGCAATGTGTCAAACATTATGTGGGACACGGAAACGCGATCAATGAGCTTAAGTTTCATCCAAGAGATCCCAACTTACTGCTGTCTGTGAGCAAAGACCACGCGTTACGCCtatggaacatccagacagatACGCTCGTAGCCATATTTGGAGGTGTGGAGGGCCATCGAGATGAGGTCTTGAGTGCGGATTTTGATCTACTCGGGGAGAAGATCATGTCCTGTGGAATGGACCACTCTCTGAAGCTGTGGAGAATAAACTCAGAGAGAATGCAAAAAGCAATACGAGGCTCTTATGAGTACAACCCCAGCAAGACCAACAGGCCTTTTGTGTCTCAGAAGATTCACTTCCCAGATTTCTCCACACGGGACATTCACAGAAACTATGTAGATTGTGTGCGCTGGCTTGGGGATTTAATTCTCTCAAAGTCCTGTGAAAATGCCATCGTGTGCTGGAAACCTGGGAAGATGGAGGATGACATTGACCACATCAAGCCCAGTGAGTCCAACGTGACCATTCTGGGCCGATTCGACTACAGCCAGTGTGACATCTGGTACATGCGCTTCTCGATGGACTTCTGGCAGAAGATGCTGGCTCTGGGAAATCAGGTCGGAAAACTGTACGTGTGGGACCTGGAGGTCGAAGATCCTCATAAAGCAAAGTGCACCACTCTCACGCTACCTAAATGCACCTCAGCCATCAGGCAGACCAGCTTCAGCAGAGACAGCAGTATTCTCATAGCAGTGTGTGACGATGCGTCTATCTGGCGCTGGGACAGGCTACGCTGATGACCTTTCATAGCCTGATGCTTTCTTTCCTCGGACCGCTAGAAATGAGCGCTCGTCACAGGACACGTTCCTCGATGAGCAACCTGGACTATGGATGCTTATTAGCTTAAGCTTTGGAAGTTGCTTACCTCAGAtgtgtctgcttttttgttcttcttttgttacCTTTTCTGTCTTTAATAAAAGCTATTTTTACTTGTTTA
>XM_034299930.1
GCCAGTTTCATGAACACATCCCTTTTAGCACGTCCCTTTTAAACGTTGCTCGTGCACAGAGCTCCATCTAGTGTACGAGGATTTCTAACCGCGTGAACCCTAAATCGCAGCTTTTTACAAGCTTAGTGCACTATCTTAGACGTAGAAATCATCATTTCATGCCCTATGCAGTGCTCTAGTATGCGGAGCGCGTAGAGGATTGGGAGTTAGCCGGAGAGTCGTTTTTGCGGCAGTGCGCGCCTGGTTTCCGGCAGTGAGGCCGCTGAGGATGAGGGGGAAGATGTCCGAGGCGGGAAACGACATCATGCCGGCAAAAAAGCAGAAACTGAGCAGCGATGAAAACAGCAACCCTGACCTTTCCGGGGATGAAAATGTAAGCGAAGACGATGCTGTCAGCATTGAGAGCGGAACGAACGCCGAGCGGCCCGACACCCCTACAAACACGGCTAGTGCCCCGGGCAGGAAGAGCTGGGGCAAGGGCAAGTGGAAGTCAAAGAAATGCAAATACTCCTTCAAGTGTGTTAACAGCCTGAGGGAGGACCATGGCCAGCCTTTGTTTGGTGTCCAGTTCAATTGGCACAGTAAGGAGGGCGACCCGCTCGTCTTCGCAACAGTGGGAAGCAACAGAGTCACCTTATATGAATGTCATTCCCAAGGAGAGATCCGGCTCCTGCAGTCTTACGTAGATGCAGATGCAGATGAGAACTTCTACACCTGCGCTTGGACGTATGACACCAGCACCAGTCACCCTCTGTTAGCGGTGGCTGGCTCCCGCGGCATCATCCGCATCATCAACCACATTACTATGCAATGTGTCAAACATTATGTGGGACACGGAAACGCGATCAATGAGCTTAAGTTTCATCCAAGAGATCCCAACTTACTGCTGTCTGTGAGCAAAGACCACGCGTTACGCCtatggaacatccagacagatACGCTCGTAGCCATATTTGGAGGTGTGGAGGGCCATCGAGATGAGGTCTTGAGTGCGGATTTTGATCTACTCGGGGAGAAGATCATGTCCTGTGGAATGGACCACTCTCTGAAGCTGTGGAGAATAAACTCAGAGAGAATGCAAAAAGCAATACGAGGCTCTTATGAGTACAACCCCAGCAAGACCAACAGGCCTTTTGTGTCTCAGAAGATTCACTTCCCAGATTTCTCCACACGGGACATTCACAGAAACTATGTAGATTGTGTGCGCTGGCTTGGGGATTTAATTCTCTCAAAGTCCTGTGAAAATGCCATCGTGTGCTGGAAACCTGGGAAGATGGAGGATGACATTGACCACATCAAGCCCAGTGAGTCCAACGTGACCATTCTGGGCCGATTCGACTACAGCCAGTGTGACATCTGGTACATGCGCTTCTCGATGGACTTCTGGCAGAAGATGCTGGCTCTGGGAAATCAGGTCGGAAAACTGTACGTGTGGGACCTGGAGGTCGAAGATCCTCATAAAGCAAAGTGCACCACTCTCACGCTACCTAAATGCACCTCAGCCATCAGGCAGACCAGCTTCAGCAGAGACAGCAGTATTCTCATAGCAGTGTGTGACGATGCGTCTATCTGGCGCTGGGACAGGCTACGCTGATGACCTTTCATAGCCTGATGCTTTCTTTCCTCGGACCGCTAGAAATGAGCGCTCGTCACAGGACACGTTCCTCGATGAGCAACCTGGACTATGGATGCTTATTAGCTTAAGCTTTGGAAGTTGCTTACCTCAGAtgtgtctgcttttttgttcttcttttgttacCTTTTCTGTCTTTAATAAAAGCTATTTTTACTTGTTTA

Function

symbol description
eed Predicted to contribute to histone methyltransferase activity (H3-K27 specific) and nucleosome binding activity. Predicted to be involved in chromatin silencing and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within histone methylation. Predicted to be located in nucleus. Predicted to be part of ESC/E(Z) complex. Is expressed in several structures, including eye; gonad; heart; intestine; and midbrain hindbrain boundary. Orthologous to human EED (embryonic ectoderm development).

NR:

description
PREDICTED: polycomb protein EED

GO: NA

KEGG:

id description
K11462 EED; polycomb protein EED

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931661.2 False 1786 mRNA 0.50 12 6668223 6675919
XM_034299930.1 True 1797 mRNA 0.50 12 6668223 6675921

Neighbor

gene id symbol gene type direction distance location
hikeshi hikeshi,ck073 coding downstream 2150 6660785 ~ 6666073 (-)
LOC113537292 ccdc81 coding downstream 8136 6641064 ~ 6660087 (-)
LOC113537384 prss23,LOC107570079,LOC106575973 coding downstream 57316 6606600 ~ 6610907 (-)
LOC113537739 LOC108258596 coding downstream 167610 6468517 ~ 6500613 (-)
dusp27 dusp27,LOC102309085 coding downstream 206672 6451575 ~ 6461551 (-)
nfkbiz nfkbiz coding upstream 15743 6691664 ~ 6699031 (-)
cep97 cep97 coding upstream 27513 6703434 ~ 6714568 (-)
LOC113537618 LOC108258862,LOC108258860,LOC108258861,LOC108258859,LOC108429797,LOC108261765 coding upstream 45407 6721328 ~ 6733356 (-)
LOC113537509 LOC108258862,LOC108258860,LOC108258861,LOC108258859,LOC108429797,LOC108261765,LOC108258858,LOC108434714 coding upstream 66666 6742587 ~ 6770718 (-)
LOC117595692 LOC108258862,LOC108258860,LOC108258859,LOC108258861,LOC108429797,LOC108261765 coding upstream 96434 6772355 ~ 6779290 (-)
G371487 NA non-coding downstream 101278 6563849 ~ 6566945 (-)
G371454 NA non-coding downstream 132219 6529397 ~ 6536004 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 663433 6001838 ~ 6004790 (-)
G371135 NA non-coding downstream 666610 6001179 ~ 6001613 (-)
G371153 NA non-coding downstream 668749 5998848 ~ 5999474 (-)
G371595 NA non-coding upstream 132572 6808493 ~ 6815071 (-)
G371632 NA non-coding upstream 191823 6867744 ~ 6867960 (-)
G371625 NA non-coding upstream 203949 6879870 ~ 6881780 (-)
G371634 NA non-coding upstream 215845 6891766 ~ 6901343 (-)
G371787 NA non-coding upstream 475517 7151438 ~ 7153159 (-)
LOC113537742 LOC108258591 other downstream 305020 6358639 ~ 6363203 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 634830 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 715910 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 1121191 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 1273211 5388904 ~ 5395012 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 194645 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 382914 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 681350 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 1042342 7718263 ~ 7724795 (-)
fam155a LOC108258331 other upstream 1236289 7912210 ~ 7993096 (-)

Expression


Co-expression Network