psmb12 (pb9la,lmp2/d,LOC108433731,LOC103024673,LOC106569959,LOC106588399)


Basic Information

Item Value
gene id psmb12
gene name pb9la,lmp2/d,LOC108433731,LOC103024673,LOC106569959,LOC106588399
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11385636 ~ 11391202 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931675.2
CGctttaaacctgtgtgtgtgtgatcgcaAGACACCGGGCTGTTTGCACTCCTAGTTTCCTGAAGCTAATCATCTAAAACTGCCAGTTCTGTGTAACTATGGACCCACCAAAATCCCAGAGTAAAGGTGTCAGCACAGGAACTACCATAGTAGCAGTAAAGTACAATGGAGGTGTTATCATTGGTTCAGACTCCAGGGCCTCAATTGGtgggtCGTATGTGTCATCTAAAGTCATTAACAAGCTGATACAGGTTCATGATCGGATATTTTGCTGCATTGCTGGTTCATTGGCAGACGCACAACATGTCACAAGAGTGGCCAAGTTTCAGCTGTCTTTCCACAGTATACAGATGGGGTCTCCTCCTTTGGTGAAAGCTGCAGCCACTGTGCTAAAGGAGCTGTGCTACAGTAATAGGGAAGATCTACAGGCTGGTTTCATCACAGCGGGTTGGGACAAGAAGAAAGGGCCACAGgtgtACACAGTATCTATGGGAGGGATGCTGATTAGTCAACCCTTTACCATCGGTGGTTCTGGTAGCACATATATCTACGGCTACATGGACGCCAAGTACAAACCTGATATGAGCCGAGAGGAGTGCATTCAGTTTGTTACAAATGCTTTGGCATTGGCTATTGGCAGAGATAACGTGAGTGGTGGCATCGCTCATTTGGTGGTGATTACCGAAGGTGGAGTTGACCATGTGGTTGTTCCTGGTGATAAATTACCAAAGTTCAGTGATGaataactgataaaaaaaaaacagaaaactctGAGTAACTACTGTGATATTCTGAAATGGTAGAGAGAGTACACTAATGTAGTATGCTTGTTCAAACCAATTTGCAATGACAAAATAATTACTATTACAAAAACACCATGTAGTGAATAAGAAGCCATTTGTCCATTGGGGTACAGCCATGTTCAACATTAGATTTTCTAATAAAATTTCTTTTGCTT

Function

NR:

description
proteasome subunit beta type-6-B like protein-like

GO:

id name namespace
GO:0002376 immune system process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005839 proteasome core complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931675.2 True 958 mRNA 0.43 6 11385636 11391202

Neighbor

gene id symbol gene type direction distance location
psmb9a psmb9-a,psmb9-b,psmb9a,LOC108258508,LOC108433730,LOC103024362 coding downstream 1365 11380912 ~ 11384271 (-)
LOC113537638 LOC108258487,LOC108258488 coding downstream 5833 11374505 ~ 11379803 (-)
LOC113537567 LOC108258496,LOC108428189 coding downstream 15581 11361426 ~ 11370055 (-)
si:ch211-239f4.1 evi5l,LOC108258486,LOC108428244,LOC107676895,LOC107718810,LOC107692153 coding downstream 33255 11312765 ~ 11352381 (-)
LOC113537574 LOC108258505,LOC108439141,LOC107376145,LOC106957017,LOC103468358,LOC106517844,LOC102204789,LOC106930820,LOC102799753,LOC101476653,LOC102083067 coding downstream 77150 11302783 ~ 11308486 (-)
LOC113537507 psmb8a,psmb8,LOC108258500,LOC108258501,LOC107694758,LOC107549856,LOC107554342 coding upstream 8420 11399622 ~ 11402573 (-)
psmb13a LOC108258499,LOC108433729,LOC103024985,LOC106569958,LOC107104818 coding upstream 12914 11404116 ~ 11410114 (-)
tspan34 NA coding upstream 43312 11434514 ~ 11446094 (-)
rab3da rab3da,LOC108258507,LOC108435977,LOC103040938,LOC107757002,LOC107747429,LOC107675349,LOC107569532 coding upstream 57177 11448379 ~ 11464622 (-)
pld6 pld6 coding upstream 76202 11467404 ~ 11471543 (-)
G374230 ddx39aa,ddx39ab,LOC100304672,LOC107603018,LOC107692155,LOC105901571 non-coding downstream 25215 11358843 ~ 11360421 (-)
G374198 grin2b,grin2bb,LOC108258482,LOC107603025,LOC107551907,LOC107676879 non-coding downstream 142799 11238241 ~ 11242837 (-)
G374196 LOC108258482,LOC107676879,LOC107551907,LOC107603025,LOC107692185 non-coding downstream 148205 11237062 ~ 11237431 (-)
G374111 NA non-coding downstream 237963 11147454 ~ 11147673 (-)
G374105 NA non-coding downstream 245825 11139183 ~ 11139811 (-)
G374370 NA non-coding upstream 202764 11593966 ~ 11594981 (-)
G374371 NA non-coding upstream 203990 11595192 ~ 11596239 (-)
G374442 NA non-coding upstream 277791 11668993 ~ 11669256 (-)
G374495 c26h3orf70 non-coding upstream 361372 11752574 ~ 11755115 (-)
G374657 igf2bp2,igf2bp2a,LOC108435967,LOC107752879,LOC107668393 non-coding upstream 543332 11934534 ~ 11943075 (-)
lipt1 lipt1 other downstream 513080 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 950269 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 1466857 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 2774795 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 2953198 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 687689 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 1233849 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 1916511 13307713 ~ 13320530 (-)
G375428 NA other upstream 2048017 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 2581134 13972336 ~ 13980251 (-)

Expression


Co-expression Network