trappc5 (trappc5,LOC107712234,LOC107692146,LOC107676838)


Basic Information

Item Value
gene id trappc5
gene name trappc5,LOC107712234,LOC107692146,LOC107676838
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 11046759 ~ 11052112 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931676.2
CCCTGGTTGACAGAGTGTTGAAATTCTGGCTTCACAGCGGTAGTCACTAAATCAGCGGaaatgGAGAATCGCTTCACTAAAGGCAAGTCCGCCATCTTGGAGCGGCCGCTAGCCCGAGCCAAGACGGAAGTGAGCGTGAGTGCGTTTGCGCTGCTCTTCTCGGAGATGGTGCAGTACTGCCAGAGCCGTGTGTACTCCGTGGCCGAGCTGCAGGGCCGACTGGCCGACATGGGTCAAGGTGTAGGGGCCAGCCTGCTGGACGTCCTCGTGATGAGGGAGAAAAATGGCAAGAGGGAGACCAAAGTCCTAAATATCCTACTGTTTATCAAGGTAAATGTATGGAAGGCACTGTTTGGGAAGGAAGCAGATAAACTGGAGCAGGCTAACGATGATGACAAGACCTACTACATCATTGAGAAAGAGCCGCTGATTAACGCTTACATCTCTGTACCCAAAGAGAACAGCACACTGAACTGCGCGGCCTTCACGGGCGGCATAGTGGAGGCCATTTTGACTCACAGTGGATTCCCAGCCAAAGTCACAGTGCACTGGCATAAAGGAACCACGCTGATGATTAAGTTTGATGAAGCGGTCATTGCTCGTGACAAGACTCTGGATGGTAGATAAGACGGCCCAGTTTTTAGCCCTGTGAGGAATATTGCCCTTTTCCCCTAACTGATACTGAATTTCCAATAAGGCTGAGTGTTCTACTGGAGGTCAGGGAGAAAGTTCAGCAGTGTGACTGAGGGAGTGATGTGATAGCAGAGGTTTAACAACAGATCACATGACAatttacagtgttgaattttAGTTTGCAAGAGATCTAAGTTTATTTAGAGGAGGAATGGatgatttccatttttaatggCAGAAACTAGGGTGCAAAGTATGGGACCTTTTAGAGGAGGAGGGTTTGaactctttaattaaaaaagtacagAGTTTTGGGGGTTCATAAAAATTagagatattaaatattttaataataaacaattaaaatgtcagAATAGCACATATAAGTTAGTTTTGAACACCCCTACAATGGGTTGTACCATTTCTTACCTCTTATATCTCTGCCTCAAGCTTGACTCCCTCATTACATATGCATTTGCTATGGTGAGAAAATGTAATGTCACTGTATAATTCACACTGGAGTATTTTCATGATCTAATGATTCATTTTTACTGAAATTGTACTGTAAGTGTTTGGACAAGGACtgaatatactatatatagtcTTTAGCCTTTACAAGTCTAAGTAAAGGTAATGTAGTTTTTCCACCTTAAAGGTGCGCTATGTGCTCACATTTCACTGTTAGATCGTGTATTTGTGTTCTTTTCTTACACCTGGTCACTTGGCGCTGGACCAAGAAGCAATGTTCAGCAGTATTTCCTCAATGCTTGGATCATTTAAAGCTTTCACTTCTTCTTTTACCACATCACATTCCATACTTGAAgttgtataattttttattcaagcgaaaactgtactgtactgtacttattttacctttaatttatgttaataaatgtggcACCCATATTATTGAGAAATTAACCCATATTATTGAGAATTTAATCCttgtttattctttaataatcattaaagtaaattatataCTGCAATCAGGGCAAATACTATCTTGCTCTGTCTGATGCTATATGTTCAAGCCATACAGGATTGTTTTTTGTGTGActaatgatgtttttattaaagtggCTACAATGTGA

Function

symbol description
trappc5 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within Golgi vesicle transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of TRAPPI protein complex; TRAPPII protein complex; and TRAPPIII protein complex. Orthologous to human TRAPPC5 (trafficking protein particle complex subunit 5).

NR:

description
PREDICTED: trafficking protein particle complex subunit 5-like

GO: NA

KEGG:

id description
K20280 TRAPPC5, TRS31; trafficking protein particle complex subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931676.2 True 1730 mRNA 0.41 3 11046759 11052112

Neighbor

gene id symbol gene type direction distance location
mcoln1a mcoln1,mcoln1a,LOC108428233,LOC107561871,LOC107676888,LOC107718592,LOC107603030 coding downstream 694 11025293 ~ 11046065 (-)
si:ch211-214c7.4 prr36,LOC108258951 coding downstream 26774 11001667 ~ 11019985 (-)
pkn1a LOC108428230,LOC107603033,LOC107712223,LOC107676851,LOC107561874 coding downstream 50994 10949078 ~ 10995765 (-)
map2k7 map2k7,LOC107712243,LOC107692141 coding downstream 100057 10934145 ~ 10946702 (-)
eif5b eif5b,LOC102778822 coding downstream 176663 10850376 ~ 10870096 (-)
si:ch211-243a20.3 NA coding upstream 195697 11247809 ~ 11258475 (-)
emp1 emp1,LOC108258510,LOC107718756,LOC107692152,LOC107603024,LOC107676894 coding upstream 223150 11275262 ~ 11280128 (-)
LOC113537574 LOC108258505,LOC108439141,LOC107376145,LOC106957017,LOC103468358,LOC106517844,LOC102204789,LOC106930820,LOC102799753,LOC101476653,LOC102083067 coding upstream 250671 11302783 ~ 11308486 (-)
si:ch211-239f4.1 evi5l,LOC108258486,LOC108428244,LOC107676895,LOC107718810,LOC107692153 coding upstream 260653 11312765 ~ 11352381 (-)
LOC113537567 LOC108258496,LOC108428189 coding upstream 309314 11361426 ~ 11370055 (-)
G374039 NA non-coding downstream 113352 10929739 ~ 10933407 (-)
G374040 NA non-coding downstream 117205 10928467 ~ 10929554 (-)
LOC117596123 NA non-coding downstream 249562 10676632 ~ 10797197 (-)
G373762 NA non-coding downstream 481835 10495636 ~ 10564924 (-)
LOC113537663 NA non-coding downstream 754181 10290637 ~ 10292578 (-)
G374091 sept3 non-coding upstream 15619 11067731 ~ 11067952 (-)
G374093 atf7ip non-coding upstream 32530 11084642 ~ 11120831 (-)
G374105 NA non-coding upstream 87071 11139183 ~ 11139811 (-)
G374111 NA non-coding upstream 95342 11147454 ~ 11147673 (-)
G374196 LOC108258482,LOC107676879,LOC107551907,LOC107603025,LOC107692185 non-coding upstream 184950 11237062 ~ 11237431 (-)
lipt1 lipt1 other downstream 174203 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 611392 10422152 ~ 10435367 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 1127980 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 2435918 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 2614321 8429562 ~ 8432438 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 1026779 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 1572939 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 2255601 13307713 ~ 13320530 (-)
G375428 NA other upstream 2387107 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 2920224 13972336 ~ 13980251 (-)

Expression


Co-expression Network