creb1a (creb1b,LOC108258958,LOC107757658,LOC107714305,LOC107552236,LOC107691602)


Basic Information

Item Value
gene id creb1a
gene name creb1b,LOC108258958,LOC107757658,LOC107714305,LOC107552236,LOC107691602
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 13417325 ~ 13427154 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931688.2
ACTTCGTGAGTCTTCGCGCGCGCTCGACGCTTTCCGGCGCTCCCCGATAGCGAGTCGTGCCGCAGTTTCGTCCTTGCTCGCGTTGTTGTTGTCTGCGGTGACGCGGCGGAGGTGTACCCTGACGCGGGCTCTTACGTGTCGGACTGAATAAAAAGTGGAGCTCCGGAGGCCCGGGAGTGACGCGAGAACAGAGAGAGCGAGTAAGCGAGTCCGTGACCGGGCAGGCCGTGCTAACCGAGTCCACCTCGTTTTCTCACTGCGACTTTTCTAAATGACCATGGACGCAGGAGCAGATGTGCAGCAGGGCAGCGAGACAGCTGTCTCTGAGACAGACACGCAGCAGATTGCCACCCTGGCGCAGcaggtTTCCATGGCAGCCGGCCAGGCCTCAGCCACCGGGCCCACTGTCACACTGGTGCAGCTGCCTAACGGTCAGACGGTGCAGGTTCATGGTGTGATCCAGGCAGCGCAGCCGTCTGTCATCCAGTCTCCCCAGGTCCAAGCCGTACAGATCTCCACCATTGCTGAGAGTGAGGACTCGCAGGAGTCAGTGGACAGTGTGACAGACACtcagaaaaggagagagatcCTCTCCAGGCGGCCCTCATACAGAAAAATCTTGAACGATCTCTCATCAGACACTCCAGCCGTGCCTCGGATAGAGGAGGAGAAAAACGAGGAGGAATCGGCCCCAGCCATAACTACAGTCACCGTGCCCACCCCCATTTACCAAACCAGCAGTGGACAATACATTGCCATCACGCAAGGCGGAGCCATCCAGCTGGCCAATAACGGCACAGACGGCGTTCAGGGCCTGCAGACTCTGACGATGACTAACACAGCAGGGGCCCAGTCAGGCGCCACCATCCTGCAGTACGCTCAGACCAGCGACGGCCAGCAGATCCTGGTGCCCAGTAACCAGGTGGTGGTGCAGGCTGCATCTGGCGATGTGCAGGCGTATCAGATCCGCACGGCATCGTCAGGCACCATCGCTCCCGGAGTGGTGATGGCGCCGGGTCAGGGAGGTGCCGAGGAGGCCACGCGCAAGAGAGAGGTCCGCCTCATGAAGAACAGGGAGGCAGCGCGAGAGTGTCGTCGCAAGAAGAAGGAATATGTGAAGTGTCTGGAGAATCGTGTGGCTGTGCTGGAAAACCAGAACAAAACCCTCATCGAGGAGCTGAAAGCACTTAAGGACTTGTACTGTCACAAATCGGAATAACACTcgcacacgcatgcacacacacacacacacacacacacatattgcgCTTTTCCCCAGGTCCTACTGAGGCAGTGACTCTTCCCCGTTACATAGGCACCTGGGCAgcagtcttttctttttctatctgtctcttttttttttttttgttttgtttttgtgtgttttttttttttttttttaaagatattggCCTATAAGAAATGAGAAAACCCGAACTCCTAAAATCTAATGCCTTTATTGTcttctgtataaaaaaaaaatccaacctTTTAAAAGAGTGTCTCGTGAGACGTAAAACTCCAAAGCGGCCCGACAGATGTGTTACGAGGTATCGCAGATGCAAAAACAGGGCTGATTTCATCTCAAGTCCTTCACCGTGATTGCGATTTCATTCGGAGAAATCCCACGATGCACCGGTGTTGgatggccacgcctcctttcaaTCACGCTGACTTTTTGGGAGACGGCGTTCGTCCGATATCACCAAGTGGGACTTCAGTGAATTAACAAATGAACTCGGATTTGTTTGAATTTCTATGTGCTTCTGTTACTAACACATGAACCCTATTTTGATATGAAAAATCTATcgaatatgtatgtatatgcttCTATTATGGGTTGTTTTGCCATTTAACCTGCGCCTTTGCCTCTTTCTTTCAGCTCCAGCTTCGTTGCATTGTTTGTGTTAAAGGAAATAGGACTTTCGATCTAAATCAGGATAAAAGTGATTATTTCTGCAATGTTCAAAATACAGTTAAACGCTTTTCAGCATAA
>XM_026931689.2
CTTCGTGAGTCTTCGCGCGCGCTCGACGCTTTCCGGCGCTCCCCGATAGCGAGTCGTGCCGCAGTTTCGTCCTTGCTCGCGTTGTTGTTGTCTGCGGTGACGCGGCGGAGGTGTACCCTGACGCGGGCTCTTACGTGTCGGACTGAATAAAAAGTGGAGCTCCGGAGGCCCGGGAGTGACGCGAGAACAGAGAGAGCGAGTAAGCGAGTCCGTGACCGGGCAGGCCGTGCTAACCGAGTCCACCTCGTTTTCTCACTGCGACTTTTCTAAATGACCATGGACGCAGGAGCAGATGTGCAGCAGGGCAGCGAGACAGCTGTCTCTGAGACAGACACGCAGCAGATTGCCACCCTGGCGCAGgtTTCCATGGCAGCCGGCCAGGCCTCAGCCACCGGGCCCACTGTCACACTGGTGCAGCTGCCTAACGGTCAGACGGTGCAGGTTCATGGTGTGATCCAGGCAGCGCAGCCGTCTGTCATCCAGTCTCCCCAGGTCCAAGCCGTACAGATCTCCACCATTGCTGAGAGTGAGGACTCGCAGGAGTCAGTGGACAGTGTGACAGACACtcagaaaaggagagagatcCTCTCCAGGCGGCCCTCATACAGAAAAATCTTGAACGATCTCTCATCAGACACTCCAGCCGTGCCTCGGATAGAGGAGGAGAAAAACGAGGAGGAATCGGCCCCAGCCATAACTACAGTCACCGTGCCCACCCCCATTTACCAAACCAGCAGTGGACAATACATTGCCATCACGCAAGGCGGAGCCATCCAGCTGGCCAATAACGGCACAGACGGCGTTCAGGGCCTGCAGACTCTGACGATGACTAACACAGCAGGGGCCCAGTCAGGCGCCACCATCCTGCAGTACGCTCAGACCAGCGACGGCCAGCAGATCCTGGTGCCCAGTAACCAGGTGGTGGTGCAGGCTGCATCTGGCGATGTGCAGGCGTATCAGATCCGCACGGCATCGTCAGGCACCATCGCTCCCGGAGTGGTGATGGCGCCGGGTCAGGGAGGTGCCGAGGAGGCCACGCGCAAGAGAGAGGTCCGCCTCATGAAGAACAGGGAGGCAGCGCGAGAGTGTCGTCGCAAGAAGAAGGAATATGTGAAGTGTCTGGAGAATCGTGTGGCTGTGCTGGAAAACCAGAACAAAACCCTCATCGAGGAGCTGAAAGCACTTAAGGACTTGTACTGTCACAAATCGGAATAACACTcgcacacgcatgcacacacacacacacacacacacacatattgcgCTTTTCCCCAGGTCCTACTGAGGCAGTGACTCTTCCCCGTTACATAGGCACCTGGGCAgcagtcttttctttttctatctgtctcttttttttttttttgttttgtttttgtgtgttttttttttttttttttaaagatattggCCTATAAGAAATGAGAAAACCCGAACTCCTAAAATCTAATGCCTTTATTGTcttctgtataaaaaaaaaatccaacctTTTAAAAGAGTGTCTCGTGAGACGTAAAACTCCAAAGCGGCCCGACAGATGTGTTACGAGGTATCGCAGATGCAAAAACAGGGCTGATTTCATCTCAAGTCCTTCACCGTGATTGCGATTTCATTCGGAGAAATCCCACGATGCACCGGTGTTGgatggccacgcctcctttcaaTCACGCTGACTTTTTGGGAGACGGCGTTCGTCCGATATCACCAAGTGGGACTTCAGTGAATTAACAAATGAACTCGGATTTGTTTGAATTTCTATGTGCTTCTGTTACTAACACATGAACCCTATTTTGATATGAAAAATCTATcgaatatgtatgtatatgcttCTATTATGGGTTGTTTTGCCATTTAACCTGCGCCTTTGCCTCTTTCTTTCAGCTCCAGCTTCGTTGCATTGTTTGTGTTAAAGGAAATAGGACTTTCGATCTAAATCAGGATAAAAGTGATTATTTCTGCAATGTTCAAAATACAGTTAAACGCTTTTCAGCATAA

Function

symbol description
creb1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of ATF4-CREB1 transcription factor complex. Orthologous to human CREB1 (cAMP responsive element binding protein 1).

NR:

description
PREDICTED: cyclic AMP-responsive element-binding protein 1-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001756 somitogenesis biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K05870 CREB1; cyclic AMP-responsive element-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931688.2 True 1996 mRNA 0.51 8 13417325 13427154
XM_026931689.2 False 1992 mRNA 0.51 8 13417325 13427153

Neighbor

gene id symbol gene type direction distance location
cd99 NA coding downstream 68491 13321263 ~ 13348834 (-)
trnar-ucu_18 NA coding downstream 89182 13328052 ~ 13328143 (-)
trnar-ucu_17 NA coding downstream 91241 13325993 ~ 13326084 (-)
trnar-ucu_16 NA coding downstream 91717 13325517 ~ 13325608 (-)
trnar-ucu_15 NA coding downstream 93152 13324082 ~ 13324173 (-)
cldng LOC108258891 coding upstream 49318 13476472 ~ 13478258 (-)
lmo7b LOC108259086,LOC108437774 coding upstream 440534 13867688 ~ 13902247 (-)
tpt1 tpt1,LOC107598740,LOC107691594 coding upstream 609276 14036430 ~ 14042668 (-)
LOC113537775 NA coding upstream 610577 14037731 ~ 14037862 (-)
LOC113537774 NA coding upstream 611374 14038528 ~ 14038598 (-)
G375420 NA non-coding downstream 229 13416822 ~ 13417096 (-)
LOC113537738 NA non-coding downstream 15900 13386832 ~ 13401425 (-)
G375329 NA non-coding downstream 145704 13267882 ~ 13271621 (-)
G375141 NA non-coding downstream 583971 12832876 ~ 12833354 (-)
G375121 NA non-coding downstream 674805 12742320 ~ 12742520 (-)
G375455 NA non-coding upstream 71489 13498643 ~ 13505565 (-)
LOC117596174 NA non-coding upstream 77150 13504304 ~ 13507133 (-)
G375466 NA non-coding upstream 93409 13520563 ~ 13520923 (-)
LOC117596119 NA non-coding upstream 402027 13829181 ~ 13830571 (-)
G375614 LOC108259021,LOC107655163,LOC107580539 non-coding upstream 405314 13832468 ~ 13834980 (-)
gyg2 gyg2 other downstream 96795 13307713 ~ 13320530 (-)
LOC113537246 NA other downstream 786922 12625051 ~ 12630403 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other downstream 1333276 12078891 ~ 12084049 (-)
lipt1 lipt1 other downstream 2544769 10871224 ~ 10872556 (-)
cab39l cab39l,LOC107676861,LOC107718429 other downstream 2981958 10422152 ~ 10435367 (-)
G375428 NA other upstream 12065 13439219 ~ 13439535 (-)
klf5a LOC108259069 other upstream 545182 13972336 ~ 13980251 (-)
pibf1 pibf1 other upstream 555591 13982745 ~ 14016151 (-)
G375826 NA other upstream 600140 14027294 ~ 14030879 (-)
rnf11a rnf11a,crgm2,LOC108259033,LOC107757048,LOC108441179,LOC103044796,LOC107694828,LOC107583209,LOC108258879,LOC108260578,LOC108260581,LOC108260584,LOC108260582,LOC108280851,LOC108260580,LOC108260664,LOC108260583 other upstream 679052 14106206 ~ 14180614 (-)

Expression


Co-expression Network