tfdp1b (tfdp1)


Basic Information

Item Value
gene id tfdp1b
gene name tfdp1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6203697 ~ 6222555 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931690.2
AATCACAACACAGCACCGTAGGACACCGCCAAGATTAGTTTGATGGCTAACTCAACAATATAGCTGGGCTTGTAGTGGCTCCGCTAGCTAACCTCCATAGCGAGCTAGCTAGCCTGCCTCACACCACCACCCTCACTCCCAGCCAGCACCAGGCTTCACCCGAAACGGGTGTTTACGACCTCTAAAGTAGCAACAAAGCCAAAACTTATAATGACGACACGAAGTGTGGAAACTTAGCTGAGGGAAAGCAGACCAGAAGCTGAAACGTGCAGTGGGGAAGACGCTCTTGCAGCCTCTGCAAGAGCCAAACATGATGGCAAGAGATGGTGGCCTCAAAGAAACCAGTGGAGAGCTGAAGGTTTTTACCACTCAGAATGTGAGTCCTGGAACAGGTGCTGTGGTGTCTCTCGTGACTGTCCATCCTTCTTCTGTCACCGGAGTGAAGCAGATAATGCCTAAAGCGCTCGGTGCCCCTGGCGTTAATGTGCTTTCACATGTGGTGATCGGCACTCCTCAGAGGCCCACTGCTCCTGCTGGTGCTGCTCTATTAACCAGCCCCAGAACTCCCAGTGCTCAGTTCctcacaccacagacacacacgcgaGAGTCTTCGCCCTGGTCCAGTGGACGCAGCAGTAGAAGAGGGGACAAGAATGGGAAAGGCTTGAGACATTTCTCCATGAAGGTATGCGAGAAGGTTCAGAAGAAAGGTGTAACCTCCTATAATGAGGTCGCAGACGAGCTGGTGACTGAGCTGAGTTCTGGAGACAACATCTCTCCCAATGAATCCCATGTTTATGACCAGAAGAACATTCGGAGGCGGGTATATGATGCACTAAATGTCCTAATGGCGATGAACATCATCTCCAAAGACAAGAAGGAAATCAAATGGATCGGCTTCCCAACCAATTCTGCTCAGGAGTGCAAGGAACTGGAGGCTGAGCGCCAGAGACGACTTGAAAGAATCAAGCAGAAACAGTCCCAGCTTCAAGAGCTTATACTACAGcaAATAGCCTTCAAGCGCCTAGTGCAAAGGAATCGCGAGGCAGAGCAGAAGAACCACAGACCTCCTCCCAATACGGTCATCCACCTCCCCTTTATCATAGTGAACACCAGCAAGAAGACAGTCATCGACTGCAGCATCTCAAATGACAAGTTTGAATACCTGTTTAACTTTGACAACATGTTTGAGATCCACGATGACATCGAGGTGCTGAAGCGCATGGGCATGGCGTTTGGGCTCGAGTCAGGCAAATGTACGCCAGAAAATCTGAAGATAGCCCGGACCCTTGTACCTAAAGCTCTGGAACCGTATGTAACAGATATGGCACAGGGCATCCACAAACAGCCCAATGGAGGCTATTCTCGTACAAACAGTGATAATGGAGCTGTTGCCACTGTGGCCTCCAGCTCCAACAGCTCATACCATGGCAGCTCTCGTGATACTCCAGCATCCTTCCTGgaagacgaggaggaggaggatgatgaggatgacgAGGACtttgatgatgacgatgatgaagaTTAACTCCTTTGCCCTGCCTTTGCGTTAGTCTGCACCGCCTGCAGCATGgcggtgtgtgtggagtgagatGTATGTTCTAATAAGAGGTTTCTGTTCTTCTGTGGCCTCTACAAATCCTCATATGGTTGTATGTTCTAGCAACCCTTCACAGTCTGCTGAGCAAAGTGCAGCTGCCTTGTAAAGGACCTCAGTGGTGCTTTggaaacagacttttttttttttcagtgtttttttttttttttgttttgttgttttttttcccccctttttatCCCCCTTTAACTGTTTATGATTCTGTTGAAACACTTTTTGCATTCTGTTGGAAGTTGAGACCTAATGCTCATGTGATCACTTTTCCTGTCCAAAGATTCATACATGAATTGTAATATGGAAAGCCATTTTCTTAACATTCAGCTTGAtgtggcagatttttttttttaactgttccCTTACTTCTTTTCATACAGGCAACTATTTTTCTTACCTTAGAAGGTTTTTGGAATGATTGAACACTTTCCACCGAGTGTCCCATTATAATAACCTTTGATCTGTAATTCCAAAGGCAGTATCTCTAGTTAagaatgaatattaaatttCTGCAGGtgttcatttttatgtaaattcctttttttacaattattttttaaagaacaacaaatATCCTACagataatatacattttatatggGTTTATATGGATGTGGGGTTGTTCTGTAGTTCTTCTGTGTGTCTAAGCTTCTTATTTCAGGAAGGGCTAAGAAAAGAATAAGGTATTTGTAATCTTTTATTCATATCTTTATGACTTACTGTATGCTGATAATTAACTTAcatacaattttaaattaagaaaatacattttggaCAAGTAAAtacaacttgtttttttttttttttttttttttttaaatccttaatATTGTCTCTAATACAAAGGTTGATTTGCAAAGCAAgttttttgtgttattgatTCATACTGGAATgacatggaaaataaaatttaaaaaaggcacAAACGTAA
>XM_026931691.2
AATCACAACACAGCACCGTAGGACACCGCCAAGATTAGTTTGATGGCTAACTCAACAATATAGCTGGGCTTGTAGTGGCTCCGCTAGCTAACCTCCATAGCGAGCTAGCTAGCCTGCCTCACACCACCACCCTCACTCCCAGCCAGCACCAGGCTTCACCCGAAACGGGTGTTTACGACCTCTAAAGTAGCAACAAAGCCAAAACTTATAATGACGACACGAAGTGTGGAAACTTAGCTGAGTTTCAGTTCTGTAATGAAGCGAATGTGGAGGATCTGAACTGTCCATCTTCCTCCAGGGAAAGCAGACCAGAAGCTGAAACGTGCAGTGGGGAAGACGCTCTTGCAGCCTCTGCAAGAGCCAAACATGATGGCAAGAGATGGTGGCCTCAAAGAAACCAGTGGAGAGCTGAAGGTTTTTACCACTCAGAATGTGAGTCCTGGAACAGGTGCTGTGGTGTCTCTCGTGACTGTCCATCCTTCTTCTGTCACCGGAGTGAAGCAGATAATGCCTAAAGCGCTCGGTGCCCCTGGCGTTAATGTGCTTTCACATGTGGTGATCGGCACTCCTCAGAGGCCCACTGCTCCTGCTGGTGCTGCTCTATTAACCAGCCCCAGAACTCCCAGTGCTCAGTTCctcacaccacagacacacacgcgaGAGTCTTCGCCCTGGTCCAGTGGACGCAGCAGTAGAAGAGGGGACAAGAATGGGAAAGGCTTGAGACATTTCTCCATGAAGGTATGCGAGAAGGTTCAGAAGAAAGGTGTAACCTCCTATAATGAGGTCGCAGACGAGCTGGTGACTGAGCTGAGTTCTGGAGACAACATCTCTCCCAATGAATCCCATGTTTATGACCAGAAGAACATTCGGAGGCGGGTATATGATGCACTAAATGTCCTAATGGCGATGAACATCATCTCCAAAGACAAGAAGGAAATCAAATGGATCGGCTTCCCAACCAATTCTGCTCAGGAGTGCAAGGAACTGGAGGCTGAGCGCCAGAGACGACTTGAAAGAATCAAGCAGAAACAGTCCCAGCTTCAAGAGCTTATACTACAGcaAATAGCCTTCAAGCGCCTAGTGCAAAGGAATCGCGAGGCAGAGCAGAAGAACCACAGACCTCCTCCCAATACGGTCATCCACCTCCCCTTTATCATAGTGAACACCAGCAAGAAGACAGTCATCGACTGCAGCATCTCAAATGACAAGTTTGAATACCTGTTTAACTTTGACAACATGTTTGAGATCCACGATGACATCGAGGTGCTGAAGCGCATGGGCATGGCGTTTGGGCTCGAGTCAGGCAAATGTACGCCAGAAAATCTGAAGATAGCCCGGACCCTTGTACCTAAAGCTCTGGAACCGTATGTAACAGATATGGCACAGGGCATCCACAAACAGCCCAATGGAGGCTATTCTCGTACAAACAGTGATAATGGAGCTGTTGCCACTGTGGCCTCCAGCTCCAACAGCTCATACCATGGCAGCTCTCGTGATACTCCAGCATCCTTCCTGgaagacgaggaggaggaggatgatgaggatgacgAGGACtttgatgatgacgatgatgaagaTTAACTCCTTTGCCCTGCCTTTGCGTTAGTCTGCACCGCCTGCAGCATGgcggtgtgtgtggagtgagatGTATGTTCTAATAAGAGGTTTCTGTTCTTCTGTGGCCTCTACAAATCCTCATATGGTTGTATGTTCTAGCAACCCTTCACAGTCTGCTGAGCAAAGTGCAGCTGCCTTGTAAAGGACCTCAGTGGTGCTTTggaaacagacttttttttttttcagtgtttttttttttttttgttttgttgttttttttcccccctttttatCCCCCTTTAACTGTTTATGATTCTGTTGAAACACTTTTTGCATTCTGTTGGAAGTTGAGACCTAATGCTCATGTGATCACTTTTCCTGTCCAAAGATTCATACATGAATTGTAATATGGAAAGCCATTTTCTTAACATTCAGCTTGAtgtggcagatttttttttttaactgttccCTTACTTCTTTTCATACAGGCAACTATTTTTCTTACCTTAGAAGGTTTTTGGAATGATTGAACACTTTCCACCGAGTGTCCCATTATAATAACCTTTGATCTGTAATTCCAAAGGCAGTATCTCTAGTTAagaatgaatattaaatttCTGCAGGtgttcatttttatgtaaattcctttttttacaattattttttaaagaacaacaaatATCCTACagataatatacattttatatggGTTTATATGGATGTGGGGTTGTTCTGTAGTTCTTCTGTGTGTCTAAGCTTCTTATTTCAGGAAGGGCTAAGAAAAGAATAAGGTATTTGTAATCTTTTATTCATATCTTTATGACTTACTGTATGCTGATAATTAACTTAcatacaattttaaattaagaaaatacattttggaCAAGTAAAtacaacttgtttttttttttttttttttttttttaaatccttaatATTGTCTCTAATACAAAGGTTGATTTGCAAAGCAAgttttttgtgttattgatTCATACTGGAATgacatggaaaataaaatttaaaaaaggcacAAACGTAA

Function

symbol description
tfdp1 Enables protein domain specific binding activity. Contributes to DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in positive regulation of G1/S transition of mitotic cell cycle; regulation of transcription, DNA-templated; and transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Part of RNA polymerase II transcription regulator complex.

NR:

description
PREDICTED: transcription factor Dp-1-like isoform X2

GO: NA

KEGG:

id description
K04683 TFDP1; transcription factor Dp-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931690.2 False 2543 mRNA 0.43 12 6203697 6222555
XM_026931691.2 True 2599 mRNA 0.43 12 6203697 6222555

Neighbor

gene id symbol gene type direction distance location
grk1a grk1,grk1a,LOC107748333 coding downstream 3517 6191628 ~ 6200180 (-)
cenpe cenpe,LOC107751066,LOC107573438 coding downstream 13303 6162114 ~ 6190394 (-)
LOC113537602 tmem255b coding downstream 42735 6136507 ~ 6160962 (-)
blzf1 blzf1 coding downstream 219900 5976377 ~ 5983797 (-)
txnl4b txnl4b coding downstream 230258 5971040 ~ 5973439 (-)
tmco3 tmco3 coding upstream 3498 6226053 ~ 6238578 (-)
lamp1a NA coding upstream 57269 6279824 ~ 6292747 (-)
cul4a cul4a,LOC102780633 coding upstream 72825 6295380 ~ 6317459 (-)
LOC117596162 LOC108258591 coding upstream 104222 6326777 ~ 6330275 (-)
LOC113537543 LOC108258588 coding upstream 141257 6363812 ~ 6380175 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 198907 6001838 ~ 6004790 (-)
G371135 NA non-coding downstream 202084 6001179 ~ 6001613 (-)
G371153 NA non-coding downstream 204223 5998848 ~ 5999474 (-)
G371152 NA non-coding downstream 205538 5998003 ~ 5998159 (-)
G371147 ercc5 non-coding downstream 208950 5993489 ~ 5994747 (-)
G371454 NA non-coding upstream 306842 6529397 ~ 6536004 (-)
G371487 NA non-coding upstream 341294 6563849 ~ 6566945 (-)
G371595 NA non-coding upstream 585938 6808493 ~ 6815071 (-)
G371632 NA non-coding upstream 645189 6867744 ~ 6867960 (-)
G371625 NA non-coding upstream 657315 6879870 ~ 6881780 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 170304 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 251384 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 656665 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 808685 5388904 ~ 5395012 (-)
G370658 NA other downstream 1314316 4843329 ~ 4889381 (-)
LOC113537742 LOC108258591 other upstream 136084 6358639 ~ 6363203 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 648011 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 836280 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 1134716 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 1495708 7718263 ~ 7724795 (-)

Expression


Co-expression Network