atg4da (atg4d)


Basic Information

Item Value
gene id atg4da
gene name atg4d
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14569640 ~ 14579218 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931702.2
GGCGCCGGTTTGACAACAGGAAGTAAATGGCGTTGTGGTGTAGGGCGAGAGCGGCGGCTGCGGAGGCTCGGGCTCGGTGTGTGGAGTCAGTGCGAgcagaggcagaggcagaggcagagtGGATCAGAAAACAGAGAGTATTCTGCTTTTAATTAGTTCTGGCTGAATGGAGGTATTATAGTAGCTGGTTATCTAGTTATCTAGTtatctagctagttagctatagCCCTTGCCTTGACATCTAATACTGCTGTTCAGAGGCAGCGCCGACATTAATAACAACTGagcacaaaaatattacataacacACTGACATGAGGCATTTAATACTGAGCTTGCGCTGGTGATGATGTCACTCCGCGGAGGTCAGCGCGAGGCCTGAGTCATGAACTCGGTCACCCCCAGCGCCGCCCAGTACGCGAGGGGCGGAGCTCTTCACAACGACCTTGTGGATGGGAGGAAATTGCCGCGGCCTTCCTCGCCGCAGGTCCTGGAGACGAAGGGGCATTTCGGGAACGGGTTACTCGCCGACGGGGCGGGAGAGCCGGATGAGGTGGacaagctgaagctgaagctgatgACGGCGTGGAACAACGTCAAATACGGATGGTCAGTCAAAAGCAAAACCGTCTTCAACAAAACGTCCCCGCTGATCCTGATGGGACAGTCCTACTTACTCAACACTGAGGAGGAAGTGGAGCGTTTCCGGCTGGCGTTCGGCTCGCGAGTGTGGCTCACCTACAGGAAGGAGTTTCCTCAGCTGGAGGGGTCGAACCTGACGTCGGACTGCGGCTGGGGCTGCATGCTGCGTAGCGGACAGATGCTCCTCGCCCAGGGGCTCATGCTCCATCTTCTGCCTCGACACTGGAGATGGCCTGACTGTCCTCAGCTGGCTGATGTGGATTTCGAGGTGTTGAGACCCCGCTCACCGTCTCGTCCGGCCGGTATCTCCATCCCCTCCTTCAGCTCTACATGGAGCACATCGGGACCTGAGAAACGCCCGTCCTCCATGAACGAGATTCCAAAACAAGCTGAGTCGAGACGGGACGTGCAGACCGAGAGCCTCCACCGCAGGCTGGTGTCATGGTTCGGGGACGAGCCGGCTGCGCCCTTCGGGGTTCACCGGCTGGTCGAGCTGGGCAAGGAGTCGGGGAAGAAGGCGGGAGACTGGTACGGGCCTTCACTCGTCGCACACTTACTGCGaaaaGCTGTGGCCAAAAGCACAGAGTTGGACGATCTGGTCGTGTACGTGGCTCAGGACTGCACAGTGTATAAAGGGGACGTGATGTGGCTGTGTGAACAGAGCTCCTCTGACTCCGGTAGCTCCGGCTGGAAGTCTGTCATCATCCTGGTCCCGGTGCGACTGGGAGGAGATTCACTCAACCCGTCCTACATCGAATGCGTCAAGaATCTTCTGAAGTTGGACTGCTGTATCGGGATCATCGGCGGGAAACCCAAACACTCGCTCTTTTTCATTGGCTTTCATGATGAGCAGCTATTGTATTTAGACCCACACTACTGTCAGCTGGTGGTCGACGTCACACAAGGAAACTTCCCGCTGGAGtCCTTTCACTGTAACTCTCCCAGGAAGATGAACTTTAATCGCATGGATCCCAGCTGCACTTTGGGCTTCTACGCTCACAGTAAAAAAGATTTTGAGTCTCTGTGCTCAGCCGTTAGCGGGGCTTTGTCCGTGTCTAAAGAGCGCTACCCGATCTTCACGTTTGTAGAGGGCAGGGGGCAGGACTACAGCCTGGAGGGGTACAGCGGAGGCAGCACACACCCCAGCGCCCACATCCTCCCCCCTGACACGATGAACAGAAACAGCGCTGAGGGCTTTGTGTTTCTGTGAGGACTCACTCATGTGGAGCACAAACCAGCTTCGAAActgaagctgaagatgaagctGAAGCTGGGGCACGATGGAGCGACTCCATACAATGCACTGCAGtcgtagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggtcataGAAAATTGAATAAATAGGTGTGTtgaggatttttattttaagcacaACCATTCACTACAATttaactttctctctttctttctgtcagtctcttgtggtgtctctctctttctttctctctctcattctctctctcttattctctctct
>XM_034299962.1
CGGCGCCGGTTTGACAACAGGAAGTAAATGGCGTTGTGGTGTAGGGCGAGAGCGGCGGCTGCGGAGGCTCGGGCTCGGTGTGTGGAGTCAGTGCGAgcagaggcagaggcagaggcagagtGGATCAGAAAACAGAGAGTATTCTGCTTTTAATTAGTTCTGGCTGAATGGAGGTATTATAGTAGCTGGTTATCTAGTTATCTAGTtatctagctagttagctatagCCCTTGCCTTGACATCTAATACTGCTGTTCAGAGGCAGCGCCGACATTAATAACAACTGagcacaaaaatattacataacacACTGACATGAGGCATTTAATACTGAGGAATCTGGTTATGCGAGGAATAAAACCATAttgggagtgtgctgttataggaaattaatcacaAACAGAGGCACTTGCGCTGGTGATGATGTCACTCCGCGGAGGTCAGCGCGAGGCCTGAGTCATGAACTCGGTCACCCCCAGCGCCGCCCAGTACGCGAGGGGCGGAGCTCTTCACAACGACCTTGTGGATGGGAGGAAATTGCCGCGGCCTTCCTCGCCGCAGGTCCTGGAGACGAAGGGGCATTTCGGGAACGGGTTACTCGCCGACGGGGCGGGAGAGCCGGATGAGGTGGacaagctgaagctgaagctgatgACGGCGTGGAACAACGTCAAATACGGATGGTCAGTCAAAAGCAAAACCGTCTTCAACAAAACGTCCCCGCTGATCCTGATGGGACAGTCCTACTTACTCAACACTGAGGAGGAAGTGGAGCGTTTCCGGCTGGCGTTCGGCTCGCGAGTGTGGCTCACCTACAGGAAGGAGTTTCCTCAGCTGGAGGGGTCGAACCTGACGTCGGACTGCGGCTGGGGCTGCATGCTGCGTAGCGGACAGATGCTCCTCGCCCAGGGGCTCATGCTCCATCTTCTGCCTCGACACTGGAGATGGCCTGACTGTCCTCAGCTGGCTGATGTGGATTTCGAGGTGTTGAGACCCCGCTCACCGTCTCGTCCGGCCGGTATCTCCATCCCCTCCTTCAGCTCTACATGGAGCACATCGGGACCTGAGAAACGCCCGTCCTCCATGAACGAGATTCCAAAACAAGCTGAGTCGAGACGGGACGTGCAGACCGAGAGCCTCCACCGCAGGCTGGTGTCATGGTTCGGGGACGAGCCGGCTGCGCCCTTCGGGGTTCACCGGCTGGTCGAGCTGGGCAAGGAGTCGGGGAAGAAGGCGGGAGACTGGTACGGGCCTTCACTCGTCGCACACTTACTGCGaaaaGCTGTGGCCAAAAGCACAGAGTTGGACGATCTGGTCGTGTACGTGGCTCAGGACTGCACAGTGTATAAAGGGGACGTGATGTGGCTGTGTGAACAGAGCTCCTCTGACTCCGGTAGCTCCGGCTGGAAGTCTGTCATCATCCTGGTCCCGGTGCGACTGGGAGGAGATTCACTCAACCCGTCCTACATCGAATGCGTCAAGaATCTTCTGAAGTTGGACTGCTGTATCGGGATCATCGGCGGGAAACCCAAACACTCGCTCTTTTTCATTGGCTTTCATGATGAGCAGCTATTGTATTTAGACCCACACTACTGTCAGCTGGTGGTCGACGTCACACAAGGAAACTTCCCGCTGGAGtCCTTTCACTGTAACTCTCCCAGGAAGATGAACTTTAATCGCATGGATCCCAGCTGCACTTTGGGCTTCTACGCTCACAGTAAAAAAGATTTTGAGTCTCTGTGCTCAGCCGTTAGCGGGGCTTTGTCCGTGTCTAAAGAGCGCTACCCGATCTTCACGTTTGTAGAGGGCAGGGGGCAGGACTACAGCCTGGAGGGGTACAGCGGAGGCAGCACACACCCCAGCGCCCACATCCTCCCCCCTGACACGATGAACAGAAACAGCGCTGAGGGCTTTGTGTTTCTGTGAGGACTCACTCATGTGGAGCACAAACCAGCTTCGAAActgaagctgaagatgaagctGAAGCTGGGGCACGATGGAGCGACTCCATACAATGCACTGCAGtcgtagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggtcataGAAAATTGAATAAATAGGTGTGTtgaggatttttattttaagcacaACCATTCACTACAATttaactttctctctttctttctgtcagtctcttgtggtgtctctctctttctttctctctctcattctctctctcttattctctctct
>XM_034299964.1
GCTTTTTTACCGAATGACGTCACagtgctaatttgcatatttgttaAATCGTCAGTTGCGTGTGAAAATGTGTCATATTTCCTCAAGACACAGCAGAGTTTTGTccaaagcaataaaacactcaggggtgtggtgttacaggaaaataatcagtgactggaCGGCGTGATTCATTTCAGAAGCTTGCGCTGGTGATGATGTCACTCCGCGGAGGTCAGCGCGAGGCCTGAGTCATGAACTCGGTCACCCCCAGCGCCGCCCAGTACGCGAGGGGCGGAGCTCTTCACAACGACCTTGTGGATGGGAGGAAATTGCCGCGGCCTTCCTCGCCGCAGGTCCTGGAGACGAAGGGGCATTTCGGGAACGGGTTACTCGCCGACGGGGCGGGAGAGCCGGATGAGGTGGacaagctgaagctgaagctgatgACGGCGTGGAACAACGTCAAATACGGATGGTCAGTCAAAAGCAAAACCGTCTTCAACAAAACGTCCCCGCTGATCCTGATGGGACAGTCCTACTTACTCAACACTGAGGAGGAAGTGGAGCGTTTCCGGCTGGCGTTCGGCTCGCGAGTGTGGCTCACCTACAGGAAGGAGTTTCCTCAGCTGGAGGGGTCGAACCTGACGTCGGACTGCGGCTGGGGCTGCATGCTGCGTAGCGGACAGATGCTCCTCGCCCAGGGGCTCATGCTCCATCTTCTGCCTCGACACTGGAGATGGCCTGACTGTCCTCAGCTGGCTGATGTGGATTTCGAGGTGTTGAGACCCCGCTCACCGTCTCGTCCGGCCGGTATCTCCATCCCCTCCTTCAGCTCTACATGGAGCACATCGGGACCTGAGAAACGCCCGTCCTCCATGAACGAGATTCCAAAACAAGCTGAGTCGAGACGGGACGTGCAGACCGAGAGCCTCCACCGCAGGCTGGTGTCATGGTTCGGGGACGAGCCGGCTGCGCCCTTCGGGGTTCACCGGCTGGTCGAGCTGGGCAAGGAGTCGGGGAAGAAGGCGGGAGACTGGTACGGGCCTTCACTCGTCGCACACTTACTGCGaaaaGCTGTGGCCAAAAGCACAGAGTTGGACGATCTGGTCGTGTACGTGGCTCAGGACTGCACAGTGTATAAAGGGGACGTGATGTGGCTGTGTGAACAGAGCTCCTCTGACTCCGGTAGCTCCGGCTGGAAGTCTGTCATCATCCTGGTCCCGGTGCGACTGGGAGGAGATTCACTCAACCCGTCCTACATCGAATGCGTCAAGaATCTTCTGAAGTTGGACTGCTGTATCGGGATCATCGGCGGGAAACCCAAACACTCGCTCTTTTTCATTGGCTTTCATGATGAGCAGCTATTGTATTTAGACCCACACTACTGTCAGCTGGTGGTCGACGTCACACAAGGAAACTTCCCGCTGGAGtCCTTTCACTGTAACTCTCCCAGGAAGATGAACTTTAATCGCATGGATCCCAGCTGCACTTTGGGCTTCTACGCTCACAGTAAAAAAGATTTTGAGTCTCTGTGCTCAGCCGTTAGCGGGGCTTTGTCCGTGTCTAAAGAGCGCTACCCGATCTTCACGTTTGTAGAGGGCAGGGGGCAGGACTACAGCCTGGAGGGGTACAGCGGAGGCAGCACACACCCCAGCGCCCACATCCTCCCCCCTGACACGATGAACAGAAACAGCGCTGAGGGCTTTGTGTTTCTGTGAGGACTCACTCATGTGGAGCACAAACCAGCTTCGAAActgaagctgaagatgaagctGAAGCTGGGGCACGATGGAGCGACTCCATACAATGCACTGCAGtcgtagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaggtcataGAAAATTGAATAAATAGGTGTGTtgaggatttttattttaagcacaACCATTCACTACAATttaactttctctctttctttctgtcagtctcttgtggtgtctctctctttctttctctctctcattctctctctcttattctctctct

Function

symbol description
atg4d Enables cysteine-type peptidase activity. Involved in proteolysis. Located in mitochondrion and nucleoplasm.

NR:

description
PREDICTED: cysteine protease ATG4D

GO: NA

KEGG:

id description
K08342 ATG4; cysteine protease ATG4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931702.2 False 2147 mRNA 0.54 11 14569640 14579217
XM_034299962.1 True 2221 mRNA 0.54 12 14569640 14579218
XM_034299964.1 False 1995 mRNA 0.54 11 14569640 14578369

Neighbor

gene id symbol gene type direction distance location
actr2a actr2,LOC108423375,LOC108441254,LOC107660226,LOC104930021 coding downstream 2554 14554491 ~ 14567086 (-)
etaa1 NA coding downstream 86776 14476538 ~ 14482864 (-)
aplf NA coding downstream 139094 14411372 ~ 14430546 (-)
ctsh ctsh,LOC107690365,LOC107556249 coding downstream 198953 14361464 ~ 14370687 (-)
prdx2 prdx2,LOC107757043 coding downstream 216486 14345342 ~ 14353154 (-)
mast1a LOC108258536,LOC108441252,LOC100710771 coding upstream 6976 14586194 ~ 14641454 (-)
zgc:66455 NA coding upstream 153357 14732575 ~ 14737860 (-)
commd1 commd1 coding upstream 171812 14751030 ~ 14760038 (-)
usp34 usp34,LOC107746122,LOC107729952 coding upstream 207901 14787119 ~ 14851953 (-)
xpo1a xpo1,LOC108258411,LOC107746076,LOC107729732,LOC107703835,LOC100380723,LOC106585804 coding upstream 275663 14854881 ~ 14878584 (-)
G376093 NA non-coding downstream 36956 14532367 ~ 14532684 (-)
G376055 NA non-coding downstream 103132 14462142 ~ 14466508 (-)
G376048 NA non-coding downstream 114171 14383208 ~ 14455469 (-)
G376050 snrpb2 non-coding downstream 181765 14386338 ~ 14387875 (-)
G376038 NA non-coding downstream 229250 14322184 ~ 14340390 (-)
G376127 taf5l non-coding upstream 78728 14657946 ~ 14661311 (-)
G376171 NA non-coding upstream 160151 14739369 ~ 14739807 (-)
G376364 NA non-coding upstream 455947 15035165 ~ 15035466 (-)
G376574 NA non-coding upstream 465494 15044712 ~ 15045359 (-)
G376602 NA non-coding upstream 519798 15099016 ~ 15101012 (-)
meis1a meis1 other downstream 45124 14460283 ~ 14524516 (-)
dand5 LOC108258523 other downstream 293103 14274327 ~ 14276537 (-)
rnf11a rnf11a,crgm2,LOC108259033,LOC107757048,LOC108441179,LOC103044796,LOC107694828,LOC107583209,LOC108258879,LOC108260578,LOC108260581,LOC108260584,LOC108260582,LOC108280851,LOC108260580,LOC108260664,LOC108260583 other downstream 389026 14106206 ~ 14180614 (-)
G375826 NA other downstream 538761 14027294 ~ 14030879 (-)
pibf1 pibf1 other downstream 553489 13982745 ~ 14016151 (-)
G376143 NA other upstream 103169 14682387 ~ 14684328 (-)
ifngr1 NA other upstream 118021 14697239 ~ 14712646 (-)
b3gnt2a LOC108259010 other upstream 160914 14740132 ~ 14749734 (-)
akt3b akt3b,LOC108259077,LOC108438606,LOC107594289,LOC107703832,LOC107729704,LOC101071975 other upstream 331444 14910662 ~ 14961052 (-)
triobpa LOC108259073 other upstream 538294 15117512 ~ 15129256 (-)

Expression


Co-expression Network