LOC113537292 (ccdc81)


Basic Information

Item Value
gene id LOC113537292
gene name ccdc81
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6641064 ~ 6660087 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931710.2
tcacatttttccccattctgatgattgatgtgTATATCAtttgggattagggttagattCGTGTTTTGATTCTGTTTGTTTCTGAATTGCTAAATGTTCTCAGAGTAATAATGCTGGAAATTTCCCAAATTTAAGACAAAATTTCccaaatttaagaaaaaattagGTAACTGATACCCTGCGAAATCTTTTTCCTCCACCGCCAGCTGCTTATGTACCTTTTTCCCAGACCGTCATGATGGAGGAAAGCTGAGTGCTGAGGAGGTGAAGcagatactgaagatgagtgaatgctttgtgacagtgtctattGGGAATTGATTGAACTGAACTAGAAAGGGCTACCTGTTGCAAAACTGCATATGTGCTGATTGCAGTGTGTCAACCAAAGCTATTTAAGTACCatttgtacttttaaaaaaaaaaaaggacttttGACCAAGAGCCTACTCATGCAGAAGAAGTTTGTGGTTTATGGTCCACAAACCATGCAAGTTTTGAAACATATGGAGTCTCTGCTGCGCAATAAAAACCACTGCTGTAATATTCAGGGAAACTCCATGTGCTGATTATTAGGCTGTAAATATATTTGTCAGGTCTCGCCTGCAGTGTGTAGGGGCAGTGGTGGTCTAGTGGTTAAGACGCTGGGCTCCTGAGCAGAAGGTCGGaggttcaaaccccagcactgccagAGTTAGGctcctgagcaaggcccttaaaccTCACTTTCTGCTGTATCATGACTGACCCTGCATTCAGACCCTAACTTCCCGGCATGTTGGGGAAAGAAGGTCACTGTACTGTGaagtatatgtgacaaataaaggcttcttctatTGTCTAAAGTCACAATGCGGGAGGTTCTGGGCGCATCAGTGTATTGCGTCATCTCCCCATGGCAACGCGCTCAGCTCACTAAGATTCCTGAGCACTGCAGCAGAGCTCGCGCGGAGCAAACACggattttctttaaataataaactgtactgctgttttcattttggAGGCAGTTTTAACGCCATGACTGACGGCTTGCTTGGCGTGGTGTCGGAGGCAGAACGCAACAGCTTTCCAACTCTGTCTCAGCTGAGCGAGAACGATGTGGATAACATTTGGGCAAATGTGTCAGCTTTCATCGAACAGCAAATGTCTATGCAAAAGGGAGTGTGCATTGCTGGCCTTGGAGTGTTCACCTTCTCCCAGCAGAAGCTGGATGTAGGCAACAAGTATGTCCTTTATCAGAGACCAGTCTTCATCTTAACTGAGAAACTTTGCCAGTCTCACGGCCTTAAACAGACCAAACCTCTCGCTGCAGCAGGGGACATTCCAGTGGTGCAGCTCAATTTCACCGCCCTGAGCATGGACAGCCCGTTCGAGCGTGACGTGGTGGAGGGCTGTGTGAGGGAGATGCTCCTCTTGCTGCTACGTGCTGTGGCTGCCCAGCGCACTGTCTTCCTTATCTTCAGGGGCATTGGCATCCTCTCAATCCGACACAGCAATGTCAAGATGAAGTTCTACCGCGACTTCATCTCGAGCATGGATGGCTCAGGCACACTCCTCTGGGCTCTGACCAATAGACCTGGAACGAGCATCTCTGTAGTCTCTGGGAAACTCTCAAGCCTCCAGCACCCTGGGAGCTGCAATGCTATCACATTCCCCAAAATCTCATCAGGAAAGGCActgagagaggaggaagaggagaatgaAGGTTCTGCGCCTAAGCTGTATGATAGACAAGAGGAGAATCGGAAAGagtcCAGGCTTTCAGCACAGCCTGAATTCAAGCCATCCACAGCCAAAGCAAATGGAAACATCTCAAGTGATAACCAAGAGACTGAGTTCCCATTAGAAACGATGGAAAGACATGCTAAAGCCCCACAGCCACTAGATGGCACTGCTGAAAAAGTAGAAGTGAAGCAAGAAGCTGCCTACCCCAGTCAGTCATGCCTCGACCACACCCGAGCTGGACAGgagCTATGCTACCTGTGTATGCAGCGAGCCCAGCGTAATGTTCCACTGTATCTGACAGAGGAGAGACGCAGACAGGACAAGGAAGAGGAGAAACTGCTGCTGCTCGCTCAGAAACACAAAGATGAGCAGTTCTTACAGACAGAACAAGCCAAGCAAGAGCAGAAACGGCAGGACAATAAGAAGATGGCAGCATTTAATCTCGGGGTCGCTGAAACACTGAAGGCAAAGAAGTCAGCAAAGTCGTCCCAGTTTGAGGGCTCGTATGTCTTGGGTAGACGGCCTGTCACTCCTCCCAGGCTTCTGAAGCAGAGGTTCTACATGCAGGAATTGTCAGAGCAACTGACCCAGCGGAGGCTGAACCACTCACAGAGATGCCAAGACCAGGAGCTCTCTGAGCAGCTACACCAAATCCAGCTAGCTGATGAGTTTGCTAAACTGAAAGCTCAGGAACACGTccagaaaaaggagaaaatcaaGAGGCTCCAAAAGGCCCTGGATATCCAACTGGAACGCCGGAATCCAGGCCTCCCTGCACGTCAGCCTGACTCGGACGGCCCTGTGTTTGGGGTGAGGGATGGTGCTCCAGCCTTTCTGGCTGAACAAAAGGAGAGAGCACAAAAAGTTTGTGAAGAGCAAATAAAGGCAGCATGCAGCAAGAGGAAGGAGGCACTGTGCAGCTGGCTGAGTGAgcagagaaaggaaagagacaTGCTGCAGCGCAACCACCAGGAACTGATAGCAGATCGGATCGCCAGTTATGAGAGGCTGAAGAACCTGAGGACTGCACTAGAAGACACATGGTCTCGCAGCGCTGACCTGAAACACTGCCGAGAACTAGAGGAGAGCGCTTTCATTAGGTCTGGCGGCAGGCTGCTGTTAGATCAGTGTGAACAGTACCGCCGCTGTTTCCAGTGCAAGAGAAAAACCACCAACTGTGGTGAGAGCAACATCTGGAAGGAGTCCCACTACATCCCCGGCTCCCGTCTGATGGTGTAGCCTCCTCTAACTCTACTCTAGAATAAACTAAAATACTTGAAGTTCTGGCACACTTGAATGTGGCTATATCTGTTTGGTATCTGGTGTGGATGCTGAAGCCTGTGCTGAGGGATTTCTTCACACTAAAAGTCATAAAGATACAAATGTCCTGCtgtgtgtcattcttttaatGGCCCAACATAAAAAGtcacaaagttttaaaaaaaataataaatctgtggcATATTTTGTTAACACTTTACTATAAGAACTacaaattaacatttattaataacgAATTAATACACACCAATTCCTGGAGCATTAGGAAATAATGAACCATATACATTATACCTCATATACCTCAGACAtaaatattactgttattaaagTATTAACATGATGTTAAGTCATTGCCTTA

Function

symbol description
ccdc81 Located in centrosome.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931710.2 True 3367 mRNA 0.47 14 6641064 6660087

Neighbor

gene id symbol gene type direction distance location
LOC113537384 prss23,LOC107570079,LOC106575973 coding downstream 30157 6606600 ~ 6610907 (-)
LOC113537739 LOC108258596 coding downstream 140451 6468517 ~ 6500613 (-)
dusp27 dusp27,LOC102309085 coding downstream 179513 6451575 ~ 6461551 (-)
LOC113537523 pou2f1 coding downstream 191145 6432009 ~ 6449919 (-)
LOC113537540 LOC108258592,LOC108429813,LOC107739159,LOC107739162,LOC107751098,LOC107694465,LOC107570071 coding downstream 236976 6403262 ~ 6404088 (-)
hikeshi hikeshi,ck073 coding upstream 698 6660785 ~ 6666073 (-)
eed eed coding upstream 8136 6668223 ~ 6675921 (-)
nfkbiz nfkbiz coding upstream 31577 6691664 ~ 6699031 (-)
cep97 cep97 coding upstream 43347 6703434 ~ 6714568 (-)
LOC113537618 LOC108258862,LOC108258860,LOC108258861,LOC108258859,LOC108429797,LOC108261765 coding upstream 61241 6721328 ~ 6733356 (-)
G371487 NA non-coding downstream 74119 6563849 ~ 6566945 (-)
G371454 NA non-coding downstream 105060 6529397 ~ 6536004 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 636274 6001838 ~ 6004790 (-)
G371135 NA non-coding downstream 639451 6001179 ~ 6001613 (-)
G371153 NA non-coding downstream 641590 5998848 ~ 5999474 (-)
G371595 NA non-coding upstream 148406 6808493 ~ 6815071 (-)
G371632 NA non-coding upstream 207657 6867744 ~ 6867960 (-)
G371625 NA non-coding upstream 219783 6879870 ~ 6881780 (-)
G371634 NA non-coding upstream 231679 6891766 ~ 6901343 (-)
G371787 NA non-coding upstream 491351 7151438 ~ 7153159 (-)
LOC113537742 LOC108258591 other downstream 277861 6358639 ~ 6363203 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 607671 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 688751 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 1094032 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 1246052 5388904 ~ 5395012 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 210479 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 398748 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 697184 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 1058176 7718263 ~ 7724795 (-)
fam155a LOC108258331 other upstream 1252123 7912210 ~ 7993096 (-)

Expression


Co-expression Network