mrpl39 (mrpl39)


Basic Information

Item Value
gene id mrpl39
gene name mrpl39
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5913959 ~ 5920199 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931713.2
TTATGACGGTGGACACGCAGCGGATGTCAAAGCATGGCGCGTTCTATGCGCAGTAATTGACTGGTTATTAAGTTTACAGCGTCTTGTATATGTGTTGTTTTACGTGAATTAAATCAGTGTTCGCTTGAAAGAGGATTTGACATGGCGTGTGGGAGAGTTTGTCAAACGGTGCAGCGCCGATTGGTGTCCAGTGCGGCAGCTGAGCGGCTTTCTGCATCTGAGTTGCGCAGTTGGCGTAGTACCCTGTTCTCTAAAGAGCAAGCTCGCCAGCGCTCACTGTATCCCCGTGTTGAGAAAATCGAGGTGACTATGGATGCCCCCGGGCTACAGGGAACACTTCTGGTGATGAACAAGGGCATGTCCACGCCATATAGCTGCGCAAGACATTTGACAGAGTGGCATGTAACGAGTGCAGCTCTCGCCCTGGTGGACGGAGAGCCATGGCACATGCATCGTCCGCTCACTCGCTCCTGCTCGCTCACACTGCTCACATTCAAAGACGCCAATCCTCAGCTCGTTAACCAGGCGTATTGGCGCTCCTGTGCAGCCTTGTTGGGCCAAGTGCTTGATGACGCCTTTAAGGAAGAGTACACTGTGGAGCTGCTGAAGATTCCTGAAGTTCCTGTGACCGCTGGTGCTTTCTGCTGTGACGTGGTGCTGGATCCTCGGTTAGATTCCTGGACTCCATCAGAGGAAAACCTACGCTCATTAACTCGTGAAGCTCAGCAGCTCATGCTTAAAGATTTACCCTGGGAGCCTCTGGAGGTGACGCCCCCTGTAGCATTGGAGATCTTCTCTCATAGCAGATATAAACAAGAGGAGGTGGAAGAAATGGCTGCTAATTGCCCCAGTGGCACAGTGTCATTATACAGGTGTGGGGAGCATGTGACTCTGTCTGAGGGCCCCCTGGTGGCCAGAACAGGTCTGTGCTGTCAGTATGAAGTAACAGCACTGCATACACTGGGAGGAGGACAGTGGGGTTTACGACGCCGAGCCCAGGGCCTCTCACTTCCCCTGAACCTCACGaTTCACCACACAATGTGGAGGAAGCTGAGGAAGAGAGCTGAGAAATTGGTGGAGATTCCCTCATCTGCAGCCACAAAATCTGTGACCACACCCCCTTCTCCCAAAACCACTCCCTCATCTTCCCAACACTGACCTGCAACTAATCATATGCATATAAAATACTGTTTCATCTCTGTGTAATATTGTTGAATAAATCGCACACCAGTG

Function

symbol description
mrpl39 Predicted to enable nucleotide binding activity. Predicted to be located in ribosome. Predicted to be active in mitochondrion. Orthologous to human MRPL39 (mitochondrial ribosomal protein L39).

NR:

description
39S ribosomal protein L39, mitochondrial

GO:

id name namespace
GO:0007520 myoblast fusion biological_process
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K17420 MRPL39; large subunit ribosomal protein L39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931713.2 True 1233 mRNA 0.52 10 5913959 5920199

Neighbor

gene id symbol gene type direction distance location
jam2a jam2 coding downstream 5092 5896336 ~ 5908867 (-)
n6amt1 n6amt1,LOC107563652 coding downstream 317864 5589772 ~ 5596095 (-)
wu:fa56d06 LOC108258903 coding downstream 356869 5549553 ~ 5557090 (-)
urp2 LOC108258299 coding downstream 501186 5409611 ~ 5412773 (-)
LOC113537353 atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265 coding downstream 573438 5331920 ~ 5340521 (-)
mrpl16 mrpl16 coding upstream 43553 5963752 ~ 5969065 (-)
txnl4b txnl4b coding upstream 50841 5971040 ~ 5973439 (-)
blzf1 blzf1 coding upstream 56178 5976377 ~ 5983797 (-)
LOC113537602 tmem255b coding upstream 216308 6136507 ~ 6160962 (-)
cenpe cenpe,LOC107751066,LOC107573438 coding upstream 241915 6162114 ~ 6190394 (-)
G371121 NA non-coding downstream 18271 5892326 ~ 5895688 (-)
LOC117596178 NA non-coding downstream 22162 5886846 ~ 5891797 (-)
G371117 NA non-coding downstream 28347 5880476 ~ 5885612 (-)
LOC117596170 NA non-coding downstream 395579 5510716 ~ 5518380 (-)
G370942 NA non-coding downstream 405590 5508102 ~ 5508369 (-)
G371147 ercc5 non-coding upstream 73290 5993489 ~ 5994747 (-)
G371152 NA non-coding upstream 77804 5998003 ~ 5998159 (-)
G371153 NA non-coding upstream 78649 5998848 ~ 5999474 (-)
G371135 NA non-coding upstream 80980 6001179 ~ 6001613 (-)
G371134 mettl21c,LOC108429839 non-coding upstream 81639 6001838 ~ 6004790 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 366927 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 518947 5388904 ~ 5395012 (-)
G370658 NA other downstream 1024578 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 3060748 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 3339488 2566757 ~ 2574471 (-)
LOC113537623 NA other upstream 21840 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 95527 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 438440 6358639 ~ 6363203 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 950367 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 1138636 7058835 ~ 7068531 (-)

Expression


Co-expression Network