stn1 (obfc1)


Basic Information

Item Value
gene id stn1
gene name obfc1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 9919822 ~ 9927977 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931714.2
ATATCCGCTCGGGGCGCTAGGGGGCAGTGTGTGCACTCGGTGTGTATATGACCGTTTGTGAATCTGCGAAGAATAAGAACATCTTGTCCTGTTTCCTGTTACTGACGCTTTAGCGGCAGCTAGaGCTTTTTTTCATGTACAATGGACGGTGATCAGGGTGGTGCTGAAGATGAACCTCCATCACTGCTGTGGGGACTGGACCCTGTGTTTTCTGCCTACGCCAGGCTTTATGTTAAAGACATCCTACAAATGAGAGAATCTCGACAAGTTCCAGGAATTTACTTCTATAAAAGTCACCCGCTGTTCCAGGTGGATGTACTGGGCACTGTGGTGTACAGACGGGAGAGAGATGACTTTTACTGCTATGGAGTGGATGACAGTACCGGAGTCATCAACTGCCTGTGCTGGAAAGATGAGAAATGGCGAGATCATGGAGACTTGGCAAAGGATGCAGCTAGAGGTCCTGCTGGAGGTGGCTTTAATGTAGAGGAGCAGTTGAGGAAGCTCCGGGAGGCACAGAGGAGCAGCTCAGTGCTGGAGATTGGAGATCTGCTCCAAGTACGCGGTTCCCTTAAAACCTCACGTGAACAGAGAGAGATCATGGCCTCCTCATTTTataaAGTGAATGATCCTGTGATGAGTGTGCAGATCTCCCGCATGTTGGAGATGCCTCAGCTCTACAGAGACTGCTATGACAAACCATTCTTTATCCCATCCAGTGAGCTTAGTGCAAGCTCCACTGAtaatGGAAGACCCTCAAGTTTCCAGTCTGTACTGAGTCAGTCAGTTCACATCTTGAAGGAGTTCCTAAAAGAGAAGGAGGTGACCAGGTTTCGACCTTATGATGTCGAGTATCTTTTACACCCATTGATCCAACAGCCTGGTTCAAACACGTCAGCGGAACAGgAGCCTGGTTCTGTTCGGTCGATGATCCCTGCACAGATCAGGAACCTCCTCAAAGAGACCCTGAAAATTCTGCAAGTGGAGGGAGAGATATTCCGCAAAGTCCTGTCTCAGGATGAGGTGTACAATGTAACTGAACATGACAAAGATCTGCTTGCGGCGATTTGTGACATCTTGAGAGAGGATtgcaaaagagagaaatATGCTGAAAAGGGTTGCCATGTGCTGCACATCTTGTCCAGCGTGAGGCAGCGTTACAGCCGTAATCTGAGCAGAGAAGCACTGGATGTGGCGCTGAAGTTCTTAGAGTGtaacagtgacatcatcagtacAACAGATGCCCATTACACTGTTTTATAATCATGGGGTTTAAAATGTTCTGGGAAACTTACACACCCCAAATCTTTATTATGTCTAAGCAAAGAACATTCAAGGCTAGAGTTTCTTAAAGTGCCTGACTGAGTCCTCATGGGGCTGTGCAGAAATTGCTGTCAATATGCCTTTGCCAAATATCTCAAAACTATTTTTGATATGCTGTTGACAAATTTCATAATTATCATTTGCTTGCAAATTGATTTTGGTATTAATCTGTCCAAAATAGGCCTGTTTTACAGACAACTTTTACAGATAGCAATCAATTTACATGCTGTTTTAGCTCAGTGATTTTCTAAACTGGGGTATGAAAGATGTTATACGATCATGCTCGATTTCTGCTTTTTAATACAACGTTAATTCAATGATCGCACAAGCCCCAGAGTCATACATCTATATTGCTCTATATTGCTCTATAGATGTATGACTCTGGGGCTTGTATGATCATGGGGCTTTGCTTAGGGTTCcacttaattaattttattattaataaggtTAAATAAATTGACAGACCTACTGCTTGAAGCAACTTTTCAGGGTATCAGCGTTCTCTATATGGCAGACTTgcctagcattataataaagaAAGGATATATTTTTCGAATTGAAAAagatatttggggaaaaaaagaaaccaacaAAAAACCACCAAAGTTGTTttgcattatattatttaaaaaatttagcCATCTAGATCTGACATGTGCTTTTAAAAAGGTAACACAGAGATGAAATTAGTCATGTGATCATAgttcaatactttttttttttccttttttacactttaaagaATTGCCTTTTTTTCTTACACTTTAAAGAATTAAAGGAATAGCATTTTCCAAG
>XM_026931715.2
TGTATGACTGCAGATGTTATCCTGACCTGAGATAAGGCAGTCTGTTTAAATGTCTTGTTTTTATGACCAGTAGGTGTAGGTGGCGTTCAGAAGGTCCACAAAGGACAAAGAAGCACTATGCTTTTTTTCATGTACAATGGACGGTGATCAGGGTGGTGCTGAAGATGAACCTCCATCACTGCTGTGGGGACTGGACCCTGTGTTTTCTGCCTACGCCAGGCTTTATGTTAAAGACATCCTACAAATGAGAGAATCTCGACAAGTTCCAGGAATTTACTTCTATAAAAGTCACCCGCTGTTCCAGGTGGATGTACTGGGCACTGTGGTGTACAGACGGGAGAGAGATGACTTTTACTGCTATGGAGTGGATGACAGTACCGGAGTCATCAACTGCCTGTGCTGGAAAGATGAGAAATGGCGAGATCATGGAGACTTGGCAAAGGATGCAGCTAGAGGTCCTGCTGGAGGTGGCTTTAATGTAGAGGAGCAGTTGAGGAAGCTCCGGGAGGCACAGAGGAGCAGCTCAGTGCTGGAGATTGGAGATCTGCTCCAAGTACGCGGTTCCCTTAAAACCTCACGTGAACAGAGAGAGATCATGGCCTCCTCATTTTataaAGTGAATGATCCTGTGATGAGTGTGCAGATCTCCCGCATGTTGGAGATGCCTCAGCTCTACAGAGACTGCTATGACAAACCATTCTTTATCCCATCCAGTGAGCTTAGTGCAAGCTCCACTGAtaatGGAAGACCCTCAAGTTTCCAGTCTGTACTGAGTCAGTCAGTTCACATCTTGAAGGAGTTCCTAAAAGAGAAGGAGGTGACCAGGTTTCGACCTTATGATGTCGAGTATCTTTTACACCCATTGATCCAACAGCCTGGTTCAAACACGTCAGCGGAACAGgAGCCTGGTTCTGTTCGGTCGATGATCCCTGCACAGATCAGGAACCTCCTCAAAGAGACCCTGAAAATTCTGCAAGTGGAGGGAGAGATATTCCGCAAAGTCCTGTCTCAGGATGAGGTGTACAATGTAACTGAACATGACAAAGATCTGCTTGCGGCGATTTGTGACATCTTGAGAGAGGATtgcaaaagagagaaatATGCTGAAAAGGGTTGCCATGTGCTGCACATCTTGTCCAGCGTGAGGCAGCGTTACAGCCGTAATCTGAGCAGAGAAGCACTGGATGTGGCGCTGAAGTTCTTAGAGTGtaacagtgacatcatcagtacAACAGATGCCCATTACACTGTTTTATAATCATGGGGTTTAAAATGTTCTGGGAAACTTACACACCCCAAATCTTTATTATGTCTAAGCAAAGAACATTCAAGGCTAGAGTTTCTTAAAGTGCCTGACTGAGTCCTCATGGGGCTGTGCAGAAATTGCTGTCAATATGCCTTTGCCAAATATCTCAAAACTATTTTTGATATGCTGTTGACAAATTTCATAATTATCATTTGCTTGCAAATTGATTTTGGTATTAATCTGTCCAAAATAGGCCTGTTTTACAGACAACTTTTACAGATAGCAATCAATTTACATGCTGTTTTAGCTCAGTGATTTTCTAAACTGGGGTATGAAAGATGTTATACGATCATGCTCGATTTCTGCTTTTTAATACAACGTTAATTCAATGATCGCACAAGCCCCAGAGTCATACATCTATATTGCTCTATATTGCTCTATAGATGTATGACTCTGGGGCTTGTATGATCATGGGGCTTTGCTTAGGGTTCcacttaattaattttattattaataaggtTAAATAAATTGACAGACCTACTGCTTGAAGCAACTTTTCAGGGTATCAGCGTTCTCTATATGGCAGACTTgcctagcattataataaagaAAGGATATATTTTTCGAATTGAAAAagatatttggggaaaaaaagaaaccaacaAAAAACCACCAAAGTTGTTttgcattatattatttaaaaaatttagcCATCTAGATCTGACATGTGCTTTTAAAAAGGTAACACAGAGATGAAATTAGTCATGTGATCATAgttcaatactttttttttttccttttttacactttaaagaATTGCCTTTTTTTCTTACACTTTAAAGAATTAAAGGAATAGCATTTTCCAAG
>XM_034299958.1
GCACTATATGTGGTATGAAGTAATGGCTTCTGCACTCTAACTAGTGCACTATACGTTCAGTGCGGGGCCGTTTGGAATACAGCCGTGCTTTTTTTCATGTACAATGGACGGTGATCAGGGTGGTGCTGAAGATGAACCTCCATCACTGCTGTGGGGACTGGACCCTGTGTTTTCTGCCTACGCCAGGCTTTATGTTAAAGACATCCTACAAATGAGAGAATCTCGACAAGTTCCAGGAATTTACTTCTATAAAAGTCACCCGCTGTTCCAGGTGGATGTACTGGGCACTGTGGTGTACAGACGGGAGAGAGATGACTTTTACTGCTATGGAGTGGATGACAGTACCGGAGTCATCAACTGCCTGTGCTGGAAAGATGAGAAATGGCGAGATCATGGAGACTTGGCAAAGGATGCAGCTAGAGGTCCTGCTGGAGGTGGCTTTAATGTAGAGGAGCAGTTGAGGAAGCTCCGGGAGGCACAGAGGAGCAGCTCAGTGCTGGAGATTGGAGATCTGCTCCAAGTACGCGGTTCCCTTAAAACCTCACGTGAACAGAGAGAGATCATGGCCTCCTCATTTTataaAGTGAATGATCCTGTGATGAGTGTGCAGATCTCCCGCATGTTGGAGATGCCTCAGCTCTACAGAGACTGCTATGACAAACCATTCTTTATCCCATCCAGTGAGCTTAGTGCAAGCTCCACTGAtaatGGAAGACCCTCAAGTTTCCAGTCTGTACTGAGTCAGTCAGTTCACATCTTGAAGGAGTTCCTAAAAGAGAAGGAGGTGACCAGGTTTCGACCTTATGATGTCGAGTATCTTTTACACCCATTGATCCAACAGCCTGGTTCAAACACGTCAGCGGAACAGgAGCCTGGTTCTGTTCGGTCGATGATCCCTGCACAGATCAGGAACCTCCTCAAAGAGACCCTGAAAATTCTGCAAGTGGAGGGAGAGATATTCCGCAAAGTCCTGTCTCAGGATGAGGTGTACAATGTAACTGAACATGACAAAGATCTGCTTGCGGCGATTTGTGACATCTTGAGAGAGGATtgcaaaagagagaaatATGCTGAAAAGGGTTGCCATGTGCTGCACATCTTGTCCAGCGTGAGGCAGCGTTACAGCCGTAATCTGAGCAGAGAAGCACTGGATGTGGCGCTGAAGTTCTTAGAGTGtaacagtgacatcatcagtacAACAGATGCCCATTACACTGTTTTATAATCATGGGGTTTAAAATGTTCTGGGAAACTTACACACCCCAAATCTTTATTATGTCTAAGCAAAGAACATTCAAGGCTAGAGTTTCTTAAAGTGCCTGACTGAGTCCTCATGGGGCTGTGCAGAAATTGCTGTCAATATGCCTTTGCCAAATATCTCAAAACTATTTTTGATATGCTGTTGACAAATTTCATAATTATCATTTGCTTGCAAATTGATTTTGGTATTAATCTGTCCAAAATAGGCCTGTTTTACAGACAACTTTTACAGATAGCAATCAATTTACATGCTGTTTTAGCTCAGTGATTTTCTAAACTGGGGTATGAAAGATGTTATACGATCATGCTCGATTTCTGCTTTTTAATACAACGTTAATTCAATGATCGCACAAGCCCCAGAGTCATACATCTATATTGCTCTATATTGCTCTATAGATGTATGACTCTGGGGCTTGTATGATCATGGGGCTTTGCTTAGGGTTCcacttaattaattttattattaataaggtTAAATAAATTGACAGACCTACTGCTTGAAGCAACTTTTCAGGGTATCAGCGTTCTCTATATGGCAGACTTgcctagcattataataaagaAAGGATATATTTTTCGAATTGAAAAagatatttggggaaaaaaagaaaccaacaAAAAACCACCAAAGTTGTTttgcattatattatttaaaaaatttagcCATCTAGATCTGACATGTGCTTTTAAAAAGGTAACACAGAGATGAAATTAGTCATGTGATCATAgttcaatactttttttttttccttttttacactttaaagaATTGCCTTTTTTTCTTACACTTTAAAGAATTAAAGGAATAGCATTTTCCAAG

Function

NR:

description
CST complex subunit STN1-like

GO:

id name namespace
GO:0010833 telomere maintenance via telomere lengthening biological_process
GO:0043047 single-stranded telomeric DNA binding molecular_function

KEGG:

id description
K23312 STN1; CST complex subunit STN1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931714.2 True 2118 mRNA 0.42 10 9919822 9927977
XM_026931715.2 False 2113 mRNA 0.41 10 9919822 9927577
XM_034299958.1 False 2080 mRNA 0.41 10 9919822 9927674

Neighbor

gene id symbol gene type direction distance location
sh3pxd2aa sh3pxd2a coding downstream 96114 9807172 ~ 9823708 (-)
cfap58 cfap58 coding downstream 213996 9597014 ~ 9705826 (-)
sorcs3 LOC108258285,LOC108443686,LOC107746061,LOC107566138,LOC107684317,LOC105891017,LOC103472494,LOC106951909 coding downstream 372565 9306733 ~ 9547257 (-)
caly caly,LOC108258305,LOC108434710,LOC103039857,LOC105891014 coding downstream 1071658 8835487 ~ 8848164 (-)
msx1b LOC108258334 coding downstream 1121574 8796367 ~ 8798248 (-)
lrrc58a LOC108258943,LOC108428195,LOC107566531 coding upstream 3472 9931449 ~ 9937173 (-)
fstl1a LOC108258944,LOC108428196,LOC103028151,LOC106575075,LOC105019681 coding upstream 11319 9939296 ~ 9961370 (-)
gja8b gja8,cx44.1,LOC108258942,LOC107566539 coding upstream 40474 9968451 ~ 9970159 (-)
bcl9 bcl9,LOC107676875,LOC107746285 coding upstream 65724 9993701 ~ 10043255 (-)
morc3b LOC108258289 coding upstream 176555 10104532 ~ 10116972 (-)
G373327 NA non-coding downstream 87497 9831607 ~ 9832325 (-)
G373317 NA non-coding downstream 94129 9825461 ~ 9825693 (-)
G373303 neurl1,neurl1aa,LOC107676877,LOC107746293,LOC107746052 non-coding downstream 119912 9793369 ~ 9799910 (-)
G373316 NA non-coding downstream 127201 9792282 ~ 9792621 (-)
G373310 neurl1 non-coding downstream 132961 9785983 ~ 9786861 (-)
G373398 NA non-coding upstream 34445 9962422 ~ 9964543 (-)
G373629 NA non-coding upstream 94560 10022537 ~ 10024885 (-)
G373649 NA non-coding upstream 156462 10084439 ~ 10084737 (-)
G373656 setd4 non-coding upstream 198848 10126825 ~ 10127889 (-)
G373657 setd4 non-coding upstream 200832 10128809 ~ 10129630 (-)
LOC117596103 LOC102201964,LOC102304430 other downstream 1043 9878843 ~ 9918779 (-)
tsga10 LOC108258346 other downstream 1308981 8591407 ~ 8610841 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other downstream 1487384 8429562 ~ 8432438 (-)
timmdc1 timmdc1 other downstream 1590796 8320868 ~ 8329026 (-)
LOC113537489 NA other downstream 1652550 8261435 ~ 8267272 (-)
cab39l cab39l,LOC107676861,LOC107718429 other upstream 494175 10422152 ~ 10435367 (-)
lipt1 lipt1 other upstream 943247 10871224 ~ 10872556 (-)
mzt1 mzt1,si:dkey-15d12.2,LOC107556706 other upstream 2150914 12078891 ~ 12084049 (-)
LOC113537246 NA other upstream 2697074 12625051 ~ 12630403 (-)
gyg2 gyg2 other upstream 3379736 13307713 ~ 13320530 (-)

Expression


Co-expression Network