LOC113537312 (LOC108259043)


Basic Information

Item Value
gene id LOC113537312
gene name LOC108259043
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 8062221 ~ 8066451 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931731.2
TTACGCAATATTTCAAGCGCGTGAATTTTCCCCGTTAGTTTCCGGTGACGTGATTACTTCCGGAGGGAGGGTGGTGAGAGAGTGAAACGGCTGTGATATTTTATGGCCACTCACGCAGCCTGAAGTCTAAAGAGGCGCTTGTGACACTCTGCGGAttattttacaaacacacacacacacacgccaaacCCGGAGACCACCATGACCAAAGTCTGAGGTGACGTCATTTAAAGTAAcgagatattttttaaaaagatatatataagaaaaagaaaaaacaacccAAACTCTTCTAAAATTGTTACATTTCTTAAAAAACTGTTAAACTGCAATGCCCGCGGCGAGGAAAACGAGGAAGCCTGATATTAAGATGGTCATTCTGGGAGACATGAACGTTGGGAAAACGTCTCTTCTCCACAGATACACGGAGAGGAGTTTTAAAGACACGCTGAGCACAGTCGGAGGAGCTTTCTTCCTCAAGCAGTGGGGACCCTACAACATCTCCATTTGGGACACTGCAGGTCGTGAGCAGTTCCATGGTCTGGGCTCCATGTACTGCCGTGGTGCGGCAGCCATCATCCTGACATATGATGTGACCAGCTGGCAAAGCCTGTTGCAGCTTGAGGAACGGTTCCTGTCGCTCACCGACTCGGCCAACAGCGACTGTGTTTTCGCCGTTGTAGGCAACAAGGCTGACCTGACAGACCCATGCGCCCAGGTCACGACCACTGAGGACACTCCAGCATGCCCTACGCCCCCGCACACGCCTACTGTCCACAAGCAGGTGGCACAGGAGGATGCTGTGGCGCTCTACAACCGCATCATTCGCTACAAGGCCcttgacacacacaccctcccacGTGCTGAGGATATGTGCTTCGAGACAAGTGCAAAGACAGGCTACAACGTTGATGCACTGTTTGAGACACTGTTCGAGCTGCTGCTGCCGTCCATCATCAGAAAGCAGGCACAAACACAGACTGGGTCAGCTACTGTATGTTTGGAGGACTCtcaggaagaaaagaagaagaaaattgaatgttgtgtgtgaagaaCAGGAATACTATTAGACGGTCAAAGATTTCTTAGGTTTTCAGTCAtccaggtttctattaatgcagAGTAAATCACAGTGATGACTTACTAACTAAATCTTAGACATATTGCTGCTGAAGAGTGACAAAAAGTCTTTAAGATTATAACCAAACCCTAGCTGCCTTGACCTCATGATGCTCTGGCTTGGTCAAAATCGCAATCTTTACACGAAAACCATGACAACTGACTTCAATCCTGCACCTGGTGTCAGTGATAGTGGTTTACGTTTTTATCATGTGGATCACTTTTTCTGACACCTTTGCTTGAGATGTTTGAGTATTTGGAGAAGTGAAAGCCTTAaagagtgattgtgtgtgaggaagagatGGTAGGAGCCACTGTAGATACTAGTTCTAGCTTTACCTCTTTATGCTGATCAACAGTGTTGCCATCCCAGGGCTTGAATAAGACTTAAGACTGCTGACCTCAAATCAGCCTGAAAGGGGCACAATCTTTCTCGTTACTGTGGTTTATGTCAAGACAATTATGTGTTAACATTATGTACTGATAAGTTTGTTGTTTCTGCAGCAGGTTCTACAATGGCACTTACAGGCTTGGACGTGTGCAAAACACACTTATGGTGTACACAAATCTGTTTTGGCACAAAATTGTTTTTCTCAATATTCATGTGCCAACCCTGGCATTTCTCTGTTTTAtggcattttatttcatttactgtgACTGTACTGTGAAAACAATTTATGGGATTTTACATATTTGCAAACTGAttgtattataaattaaaataaaggctgattaaattatttttacttaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931731.2 True 1870 mRNA 0.44 2 8062221 8066451

Neighbor

gene id symbol gene type direction distance location
irs2a LOC108258957,LOC108434672 coding downstream 7676 8042485 ~ 8054545 (-)
lig4 lig4,LOC108412030,LOC107654268 coding downstream 51988 8006372 ~ 8010233 (-)
mid1 mid1,LOC103030906,LOC106575281,LOC106574413 coding downstream 759657 7253751 ~ 7302564 (-)
ednrba ednrb,LOC108258323,LOC108434743,LOC107658690,LOC107566659,LOC105911940,LOC106600156,LOC105022329 coding downstream 835572 7218365 ~ 7226649 (-)
LOC113537349 LOC108258693 coding downstream 860896 7184802 ~ 7201325 (-)
LOC113537306 ube2a,ube2al,LOC108259060,LOC103029486,LOC103021436,LOC107552373,LOC105934920,LOC107588833 coding upstream 21329 8087780 ~ 8090097 (-)
ankrd10a ankrd10 coding upstream 24915 8091366 ~ 8105352 (-)
cryaa cryaa,LOC106939151 coding upstream 61110 8127561 ~ 8131183 (-)
cbsa cbs,LOC107742639,LOC107654262,LOC107667662 coding upstream 66536 8132987 ~ 8148533 (-)
u2af1 u2af1,LOC102219527,LOC105917412,LOC103389252,LOC101158751 coding upstream 83689 8150140 ~ 8157560 (-)
G372307 NA non-coding downstream 45833 8016105 ~ 8016388 (-)
G372300 NA non-coding downstream 73023 7988950 ~ 7989198 (-)
G372288 NA non-coding downstream 85230 7976777 ~ 7976991 (-)
G372168 NA non-coding downstream 152669 7909124 ~ 7909552 (-)
G372132 NA non-coding downstream 281016 7780062 ~ 7781205 (-)
G372471 NA non-coding upstream 136317 8202768 ~ 8204224 (-)
G372522 NA non-coding upstream 362153 8428604 ~ 8444065 (-)
G372742 NA non-coding upstream 708581 8775032 ~ 8788141 (-)
LOC113537261 NA non-coding upstream 897134 8963585 ~ 8965621 (-)
G373288 NA non-coding upstream 1693290 9759741 ~ 9759949 (-)
fam155a LOC108258331 other downstream 69125 7912210 ~ 7993096 (-)
G372086 LOC108258915 other downstream 337426 7718263 ~ 7724795 (-)
LOC113537388 arhgap6 other downstream 583712 7357271 ~ 7478509 (-)
LOC113537271 LOC108258282 other downstream 993690 7058835 ~ 7068531 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other downstream 1151675 6870566 ~ 6910546 (-)
cars2 cars2 other upstream 2951 8069402 ~ 8084539 (-)
LOC113537489 NA other upstream 194984 8261435 ~ 8267272 (-)
timmdc1 timmdc1 other upstream 254417 8320868 ~ 8329026 (-)
LOC113537606 nhlh2,LOC108258389,LOC103035065,LOC108434665,LOC107739819,LOC105019883 other upstream 363111 8429562 ~ 8432438 (-)
tsga10 LOC108258346 other upstream 524956 8591407 ~ 8610841 (-)

Expression


Co-expression Network