actr2a (actr2,LOC108423375,LOC108441254,LOC107660226,LOC104930021)


Basic Information

Item Value
gene id actr2a
gene name actr2,LOC108423375,LOC108441254,LOC107660226,LOC104930021
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 14554491 ~ 14567086 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931754.2
ACGATTGGGGATTTTGCAATTTTATTGCTGTAATTTTAACTGTAGTAAAAAGGGGACTTgaagatttgtttttctttatttctgtagttttaGACGCAGTGAAGAGGGgactcttttattttaaaaagtaatatgtttttgttcatAACTGCAGTAAAGAGgagattttaattttgatttatttctcaTCACTAGTTTTAGCAGCGGTAAAGAGGAGACTTTtagtttgaaaaataataagGCTGTGGTTATAACTGCAGTAAATAGGggacttttattttgatatatttctTATTGCTGTGGTTATGACTGCAGTAAAGAGGGGAcgtttattttgatttatttcttaattgCCGTGGTTATAACCGCGGTGAAGAAGGGACCTTTATTTTGAAAAGTTTCCCGGCTGTAGTTGAATGCGGAACAGGAGCTGGGCGGCGCTTCCGCCTGTGCTGAGGAAAGTTGGGCTGCCAGATCAGGGCGGATTCTCGGATTTTGATAAGAAGATGGACAGTCAGGGGAGGAAAGTGGTGGTGTGTGATAACGGCACCGGGtttgtgAAGTGTGGATATGCCGGCTCTAATTTTCCTGAGCACATCTTCCCTGCACTGGTGGGGCGACCCATCATCCGTTCCACAGCCAAAGTGGGCAACATCGAGATCAAGGACCTGATGGTGGGGGACGAAGCGAGCGAGCTGCGCTCCATGCTGGAGGTCAACTACCCAATGGAGAACGGCATCGTGCGCAACTGGGATGACATGAAGCACCTGTGGGACTACACCTTCGGCCCCGAGAAGCTCAACATCGACTCACGCAACTGCAAGATCCTCCTCACCGAGCCCCCGATGAACCCCACCAAGAACCGAGAGAAGATCATCGAGGTGATGTTCGAGACGTACCAGTTTGCTGGTGTTTACATCGCCATCCAGGCCGTGCTCACGCTCTATGCTCAAGgccTGCTCACTGGCGTGGTTGTAGACTCTGGTGATGGTGTGACTCACATCTGTCCCGTGTATGAGGGCTTCTCTCTCCCCCACCTCACACGACGACTGGACATCGCTGGCCGAGACATCACACGCTACCTCATCAAGctgctgTTGCTAAGAGGTTACGCCTTCAACCACTCGGCTGACTTTGAGACTGTGAGGATGATGAAGGAGAAGCTGTGCTACGTGGGCTACAACATCGAACAGGAGCAGAAACTTGCGCTGGAGACCACCGTGCTGGTCGAGTCCTACactctgccTGATGGCAGGGTAATAAAGGTCGGGGGTGAGCGTTTCGAGGCTCCCGAGGCGCTCTTCCAGCCGCACCTGATTAACGTGGAGGGGGTAGGCGTGGCCGAACTGCTCTTCAACACCATCCAAGCAGCCGACATTGATACCAGGGCTGAGTTCTATAAGCACATTGTGTTGTCTGGCGGTTCGACGATGTATCCTGGTCTCCCGTCCCGTCTGGAGCGCGAGCTCAAGCAGCTTTACCTGGAGAGGGTGCTCAAAGGAGATGTGGACAAGCTCTCTaaGTTTAAGATCCGTATCGAAGACCCCCCTCGCCGTAAGCACATGGTGTTTCTGGGCGGAGCCGTGCTCGCTGACATCATGAAAGATAAAGATAATTTCTGGCTGACTAGAGAGGAGTATCAGGAGAAGGGCATGCGCGTGCTGGAGAAACTCGGCGTGACCGTCagataaacaacacacacagaaacacacacccacacccacacacacacacacacacacttgaattaattcacacattcatacagGGTGGCATTTTGGCAGTGTATAAATGGGGAAAATAAGCAGTTCTACctgattattataataatgataataataataataataataatgatacttgAATTTTACAGTTGCAGCATAAAAATATCATCGTCTTATTGGTGCAACCTTCTGACCACGATGTGGACTTTAAAGCTCtgataagggggaaaaaaacggtTAAGTAAAATCCTCACTCATTAAAGTACTTGTTTATGCTGCCAAAATTAATCCTAGGATggagcttctctctctctctctctctcttcatgtctTTCACATTTTGTCGCCACTTGTCATTTTTGAAGGACGTACAGCTCACACAAATGGTTAAAAACGTGTAAAATAAacttgattaaataaataaatgaatcgccAGGAGATCCAGACAACAAGAACAATGAACTGTATGAACTGTAAgatgtttaaaggtgcagtctgtaatttttCAAAGAGTTCCTAGACCTGCAGCAATCATGCAAATTTAAAGATAACTCAGAAAAACTTTGAGTCACGGTATTGGTATACAACAGattttggctattttttttatttttttatttcaggtttctgtttacattttttctggccctgaaatgaTCTCCCAGGCAATGCTGGTTCACAACTGCCACGTTGCCATAAAAGGCAACTCAAAGGCAAATACAATTTGAATACAGGGGTTgtggtttttggttttttttttttctaaaaattacaaactgctcctttaaagcCAACAGGATCAAATGTGTAAAGGCACCCAGCTGAGATGagctgcttttttaaaatgtaaaatgtgttactatcctttctatttttctttttaatttcctttttatgtttttattgtttgatATGTTGTCGGATGTGCACACACTGTTCTACGAAAATGCTCTGGTCCACTAGAGGGCGCTAAGGTGAACAAATTCATTCAAGTTTATTAGCCGTGTAGTTTAGAGTGTAgcgtagaaaaaaaaattaggattGTGTTTCATCCATCAGGACCAAATTACCATCATTCCCACTTAGTGTTAGATCTGGTACAGGACCTTTCAGAAGTTAGCTTGGAGAAAATTCTGGATCGGTGTGATTTTTACGACGCAGCCTTTAACAGGAACCATCTTTAACGTTAATGTTACGCGTGTTGACGATATCGTGAATGAAACTGTTTCCAGATCAGCACAGCGTTTGAATGAAATGTCAGCAGCAGCGCTGCCCTCGGAACATTCCCTCTTAAGTTCAGATATGCTAATCAGGCTAACGAGGGGTGAATGCTAGTGTTACTAACACAGCTAACCTTCGTTCATCGCCTGGAGAATTAGCATTGCTTTTTATCAAACTGTCCCTTTAGCAGCCACTTCGCCATCGAGTCCACCATTGTTTATCAGCTCAAATCTGTCTGCTGATCACCGtcacatgtttttaatgtagGCTGgaatttttatgttgttttcttttcctttctttttggTATGCGCTTTCTATTTTGATACGGTTCATTTTCTCGTACACGGTTTGTTGGGTTAGCGCAGCTCGCATACACAAGCAGGTTTTGTGCGGTCTAgatgaaacttaaaaaaaaaaaaaaaaaaaaaaaaaagcttacagGGCTAATTTATCAAAACAATGCTAATAAGGCTAGCCATGTTGCTAATGTTGCTATGTGGTATTTGCGGTTATATTAGCAACAGCTATCCTCACATTTAAACGGCTAATAGGTAGCTAGTGTTGGCAgttggctagctagcttagaATGACATTAAGGAAGCTGCTGAGGAGctaaaaggtgaaaaaaaaaaacataaatataaacaaaattcaTGACCATTAACACTTTGTTTATGTAACAA

Function

symbol description
actr2 A structural constituent of cytoskeleton. Contributes to actin filament binding activity. Involved in positive regulation of cellular component biogenesis and positive regulation of nucleobase-containing compound metabolic process. Acts upstream of or within cilium assembly. Located in cytoplasm; nucleus; and site of double-strand break. Part of Arp2/3 protein complex. Biomarker of colorectal carcinoma.

NR:

description
actin-related protein 2-A isoform X2

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K17260 ACTR2, ARP2; actin-related protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931754.2 True 3631 mRNA 0.43 9 14554491 14567086

Neighbor

gene id symbol gene type direction distance location
etaa1 NA coding downstream 71627 14476538 ~ 14482864 (-)
aplf NA coding downstream 123945 14411372 ~ 14430546 (-)
ctsh ctsh,LOC107690365,LOC107556249 coding downstream 183804 14361464 ~ 14370687 (-)
prdx2 prdx2,LOC107757043 coding downstream 201337 14345342 ~ 14353154 (-)
LOC113537614 LOC108441182,LOC107694826,LOC107757045,LOC107583205,LOC108258878,LOC107569528,LOC107675400 coding downstream 307233 14136218 ~ 14247258 (-)
atg4da atg4d coding upstream 2554 14569640 ~ 14579218 (-)
mast1a LOC108258536,LOC108441252,LOC100710771 coding upstream 19108 14586194 ~ 14641454 (-)
zgc:66455 NA coding upstream 165489 14732575 ~ 14737860 (-)
commd1 commd1 coding upstream 183944 14751030 ~ 14760038 (-)
usp34 usp34,LOC107746122,LOC107729952 coding upstream 220033 14787119 ~ 14851953 (-)
G376093 NA non-coding downstream 21807 14532367 ~ 14532684 (-)
G376055 NA non-coding downstream 87983 14462142 ~ 14466508 (-)
G376048 NA non-coding downstream 99022 14383208 ~ 14455469 (-)
G376050 snrpb2 non-coding downstream 166616 14386338 ~ 14387875 (-)
G376038 NA non-coding downstream 214101 14322184 ~ 14340390 (-)
G376127 taf5l non-coding upstream 90860 14657946 ~ 14661311 (-)
G376171 NA non-coding upstream 172283 14739369 ~ 14739807 (-)
G376364 NA non-coding upstream 468079 15035165 ~ 15035466 (-)
G376574 NA non-coding upstream 477626 15044712 ~ 15045359 (-)
G376602 NA non-coding upstream 531930 15099016 ~ 15101012 (-)
meis1a meis1 other downstream 29975 14460283 ~ 14524516 (-)
dand5 LOC108258523 other downstream 277954 14274327 ~ 14276537 (-)
rnf11a rnf11a,crgm2,LOC108259033,LOC107757048,LOC108441179,LOC103044796,LOC107694828,LOC107583209,LOC108258879,LOC108260578,LOC108260581,LOC108260584,LOC108260582,LOC108280851,LOC108260580,LOC108260664,LOC108260583 other downstream 373877 14106206 ~ 14180614 (-)
G375826 NA other downstream 523612 14027294 ~ 14030879 (-)
pibf1 pibf1 other downstream 538340 13982745 ~ 14016151 (-)
G376143 NA other upstream 115301 14682387 ~ 14684328 (-)
ifngr1 NA other upstream 130153 14697239 ~ 14712646 (-)
b3gnt2a LOC108259010 other upstream 173046 14740132 ~ 14749734 (-)
akt3b akt3b,LOC108259077,LOC108438606,LOC107594289,LOC107703832,LOC107729704,LOC101071975 other upstream 343576 14910662 ~ 14961052 (-)
triobpa LOC108259073 other upstream 550426 15117512 ~ 15129256 (-)

Expression


Co-expression Network