LOC113537353 (atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265)


Basic Information

Item Value
gene id LOC113537353
gene name atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5331920 ~ 5340521 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931789.2
TGACCAAGTTTACTCAAATCTCCTCCCCTGCAGGCAGGTGAGCAAGTAGGATATAAATGTATGTGAGCCCGGTTTGGAACAGCAGGAGCTTTTAATTGTCTCCAGAGGACGGGAATAGGAAAAGCCCTGCTGAAcattgaataaattaaaaagacaaaatgggaTTAGGTGGCAGTGATAAGTACGAATTAGCAGCAACCTCTGAGGatggggagaaaaagaagaaaaagggaaagaagCAGGAGAAGGACATGGACGATCTAAAAAAAGAAGTTGATCTGGATGATCATAAGTTGACCTTAGATGAGCTTCATCGCAAATATGGCACTGACCTTGAAAGAGGCTTGACTGCTTCTCGTGCAAAAGAGATCCTGGCACGTGATGGACCCAATGCTCTGACACCTCCTCCTACAACCCCAGAATGGGTCAAATTCTGTAAGCAGCTCTTTGGTGGATTTTCCACTTTATTGTGGATTGGAgctattctttgttttttggcATATGGAATCCAGGCAGCTTCGGAAGATGAACCAGCAAATGATaatttgtATCTCGGAATTGTCCTGTCTGCTGTTGTAATGATTACTGGATGTTTCTCATACTATCAAGAGGCTAAGAGCTCAAAGATCATGGAATCCTTTAAAAACCTTGTCCCTCAgCAAGCTCTGGTTGTCCGTGATGGTGATAAGAAGAGCATTAATGCTGAGGAAGTAGTGGTTGGTGACATTGTGGAGATTAAGGGTGGTGACAGAATCCCTGCTGATCTGCGCATTATCTCTGCACATGGATGCAAGGTGGACAATTCATCCCTTACTGGTGAATCTGAGCCTCAGACACGTACTCCTGACTTCTCCAATGACAATCCTCTGGAAACAAGGAACATTGTATTCTTTTCTACAAATTGTGTTGAagGTTCTGCCAGAGGTATTGTCATCAACACAGGTGATCGCACTGTGATGGGTCGAATTGCCACCCTGGCCTCAAGTCTTGAGGTTGGACAGACACCAATTGCTAAAGAGATTGAACACTTCATCCACATTATTACTGGTGTGGCTGTTTTCCTGGGCGTGTCCTTCTTCATCTTGTCCCTAATTCTTGGATATGGGTGGCTTGAAGCTGTCATCTTCCTTATTGGAATCATTGTTGCCAATGTGCCTGAGGGTCTGCTTGCTACAGTAACTGTGTGTCTGACTTTAACTGCCAAACGTATGGCGAAGAAGAACTGTTTGGTGAAAAATCTTGAGGCAGTGGAGACACTTGGCTCTACCTCCACCATCTGCTCAGACAAGACAGGAACTCTGACTCAGAACCGTATGACTGTGGCACATATGTGGTTTGACAACCAGATTCATGAAGCAGATACCACAGAGAACCAAAGTGGAACCTCCTTTGACAGAAGCTCTCCCACTTGGTCTGCCCTGGCTCGTGTAGCTGGCCTCTGCAACCGTGCAGTCTTCCTTGCAGATCAAGCCAATGTTCCTATCCTTAAGAGAGAAACTGCTGGTGATGCATCAGAGTCTGCTTTGCTGAAATGTATTGAGCTCTGCTGTGGTACAGTGAAGGAAATGAGGGACAAATACCCCAAAATTGCTGAGATCCCTTTCAACTCCACCAATAAATACCAGCTCTCAATCCACAAGAACCCCAACTCTTCAGAGACAAAACACTTGCTTGTAATGAAGGGAGCTCCTGAGAGAATCCTAGACCGATGCTCAACTATTATACTTCAAGGAAAAGAGCAGCCACTGGATGATGAACTGAAGGATGCTTTTCAGAATGCTTATGTGGAACTGGGAGGTCTCGGAGAAAGAGTATTAGGTTTCTGTCATTACAGCCTCCCTGATGATCAGTTTCCTGAAGGCTTTGCATTTGATACTGATGAGGTGAACTTCCCCACTGAGAACCTGTGCTTTGTTGGACTCATGGCCATGATTGATCCTCCTCGTGCTGCGGTACCTGATGCAGTGGGCAAGTGCAGGAGTGCTGGAATCAAGGTCATCATGGTTACTGGTGATCACCCAATTACTGCTAAAGCCATTGCTAAGGGTGTGGGTATCATCTCTGAAGGCAATGAGACTGTGGAAGACATCGCTGCTCGTCTAAACATTCCTGTTGGAGATGTCGACCCCAGGGATGCAAAGGCTTGTGTGGTCCATGGTGGAGATTTGAAGGACATGACCTCAGAACACCTGGATGACATCCTAAGCCACCACACTGAGATTGTGTTTGCCAGAACTTCTCCACAGCAGAAATTGATAATTGTTGAAGGCTGTCAGCGACAGGGTGCTATTGTGGCTGTGACTGGTGATGGTGTTAATGATTCTCCTGCTCTGAAGAAGGCTGACATTGGAGTAGCAATGGGTATTGCTGGATCTGACGTCTCCAAACAGGCTGCTGATATGATTCTCCTGGATGATAACTTTGCTTCCATTGTTACTGGAGTAGAAGAAGGCCGTCTGATATTTGACAACTTGAAGAAATCTATTGCATACACTCTGACCAGCAACATTCCTGAGATTTCCCCCTTTCTGCTCTTCATTATTGCAAACATTCCTCTTCCTCTGGGCACTGTCACTATTTTATGTATTGACCTGGGAACTGACATGGTTCCTGCTATTTCTTTGGCATACGAAGTTGCCGAAAGTGACATCATGAAGAGACAGCCCAGAAATGCTAAAACAGACAAGCTGGTGAATGAAAGGCTTATTAGTATGGCCTATGGTCAAATTGGAATGATGCAAGCTACTGCAGGATTCTTCACTTATTTTGTGATTCTTGCTGAGAATGGATTCCTGCCTTCAGACCTAATAGGAGTGCGTGTTAATTGGGATGATAAATATTACAATGATCTAGAAGACAGCTATGGCCAACAATGGACTTATGAACGAAGAAAAATTGTGGAGTACACATGCCATACTGCATTCTTTGCCAGCATAGTAATTGTGCAGTGGGCCGATCTAATCATCTGTAAGACCAGGAGGAACTCCATCCTACAACAGGGAATGAAaaacaaaatattaatatttggaTTGTTTGAGGAGACCGCTTTGGCAGCTTTCTTATCCTACTGCCCAGGCATGGACGTAGCTCTTAGAATGTATCCACTGAACCAAGCTGGTGGTTCTGTGCCTTCCCATATTCACTGCTCATCTTCCTTTATGATGAGGCAAGAAGGTACCTCCTTAGACGGAACCCAGGCGGATGGGTGGAAAAGGAGACATACTACTAAGAAAACCCCCTTTTCAACTATGAAATTCATGATAAATGCACAATGCCCTAGAAATAAATGGGCACACAAAATATACACTCCCAATTTGCATTAATCATACAAATGTACTGCTATATTTTAATAAAGGTGAACTGAGACAGTAA
>XM_026931790.2
AAGTTTACTCAAATCTCCTCCCCTGCAGGCAGGTGAGCAAGTAGGATATAAATGTATGTGAGCCCGGTTTGGAACAGCAGGAGCTTTTAATTGTCTCCAGAGGACGGGAATAGGAAAAGCCCTGCTGAAcattgaataaattaaaaagacaaaatgggaTTAGGTAAGGGCAGTGATAAGTACGAATTAGCAGCAACCTCTGAGGatggggagaaaaagaagaaaaagggaaagaagCAGGAGAAGGACATGGACGATCTAAAAAAAGAAGTTGATCTGGATGATCATAAGTTGACCTTAGATGAGCTTCATCGCAAATATGGCACTGACCTTGAAAGAGGCTTGACTGCTTCTCGTGCAAAAGAGATCCTGGCACGTGATGGACCCAATGCTCTGACACCTCCTCCTACAACCCCAGAATGGGTCAAATTCTGTAAGCAGCTCTTTGGTGGATTTTCCACTTTATTGTGGATTGGAgctattctttgttttttggcATATGGAATCCAGGCAGCTTCGGAAGATGAACCAGCAAATGATaatttgtATCTCGGAATTGTCCTGTCTGCTGTTGTAATGATTACTGGATGTTTCTCATACTATCAAGAGGCTAAGAGCTCAAAGATCATGGAATCCTTTAAAAACCTTGTCCCTCAgCAAGCTCTGGTTGTCCGTGATGGTGATAAGAAGAGCATTAATGCTGAGGAAGTAGTGGTTGGTGACATTGTGGAGATTAAGGGTGGTGACAGAATCCCTGCTGATCTGCGCATTATCTCTGCACATGGATGCAAGGTGGACAATTCATCCCTTACTGGTGAATCTGAGCCTCAGACACGTACTCCTGACTTCTCCAATGACAATCCTCTGGAAACAAGGAACATTGTATTCTTTTCTACAAATTGTGTTGAagGTTCTGCCAGAGGTATTGTCATCAACACAGGTGATCGCACTGTGATGGGTCGAATTGCCACCCTGGCCTCAAGTCTTGAGGTTGGACAGACACCAATTGCTAAAGAGATTGAACACTTCATCCACATTATTACTGGTGTGGCTGTTTTCCTGGGCGTGTCCTTCTTCATCTTGTCCCTAATTCTTGGATATGGGTGGCTTGAAGCTGTCATCTTCCTTATTGGAATCATTGTTGCCAATGTGCCTGAGGGTCTGCTTGCTACAGTAACTGTGTGTCTGACTTTAACTGCCAAACGTATGGCGAAGAAGAACTGTTTGGTGAAAAATCTTGAGGCAGTGGAGACACTTGGCTCTACCTCCACCATCTGCTCAGACAAGACAGGAACTCTGACTCAGAACCGTATGACTGTGGCACATATGTGGTTTGACAACCAGATTCATGAAGCAGATACCACAGAGAACCAAAGTGGAACCTCCTTTGACAGAAGCTCTCCCACTTGGTCTGCCCTGGCTCGTGTAGCTGGCCTCTGCAACCGTGCAGTCTTCCTTGCAGATCAAGCCAATGTTCCTATCCTTAAGAGAGAAACTGCTGGTGATGCATCAGAGTCTGCTTTGCTGAAATGTATTGAGCTCTGCTGTGGTACAGTGAAGGAAATGAGGGACAAATACCCCAAAATTGCTGAGATCCCTTTCAACTCCACCAATAAATACCAGCTCTCAATCCACAAGAACCCCAACTCTTCAGAGACAAAACACTTGCTTGTAATGAAGGGAGCTCCTGAGAGAATCCTAGACCGATGCTCAACTATTATACTTCAAGGAAAAGAGCAGCCACTGGATGATGAACTGAAGGATGCTTTTCAGAATGCTTATGTGGAACTGGGAGGTCTCGGAGAAAGAGTATTAGGTTTCTGTCATTACAGCCTCCCTGATGATCAGTTTCCTGAAGGCTTTGCATTTGATACTGATGAGGTGAACTTCCCCACTGAGAACCTGTGCTTTGTTGGACTCATGGCCATGATTGATCCTCCTCGTGCTGCGGTACCTGATGCAGTGGGCAAGTGCAGGAGTGCTGGAATCAAGGTCATCATGGTTACTGGTGATCACCCAATTACTGCTAAAGCCATTGCTAAGGGTGTGGGTATCATCTCTGAAGGCAATGAGACTGTGGAAGACATCGCTGCTCGTCTAAACATTCCTGTTGGAGATGTCGACCCCAGGGATGCAAAGGCTTGTGTGGTCCATGGTGGAGATTTGAAGGACATGACCTCAGAACACCTGGATGACATCCTAAGCCACCACACTGAGATTGTGTTTGCCAGAACTTCTCCACAGCAGAAATTGATAATTGTTGAAGGCTGTCAGCGACAGGGTGCTATTGTGGCTGTGACTGGTGATGGTGTTAATGATTCTCCTGCTCTGAAGAAGGCTGACATTGGAGTAGCAATGGGTATTGCTGGATCTGACGTCTCCAAACAGGCTGCTGATATGATTCTCCTGGATGATAACTTTGCTTCCATTGTTACTGGAGTAGAAGAAGGCCGTCTGATATTTGACAACTTGAAGAAATCTATTGCATACACTCTGACCAGCAACATTCCTGAGATTTCCCCCTTTCTGCTCTTCATTATTGCAAACATTCCTCTTCCTCTGGGCACTGTCACTATTTTATGTATTGACCTGGGAACTGACATGGTTCCTGCTATTTCTTTGGCATACGAAGTTGCCGAAAGTGACATCATGAAGAGACAGCCCAGAAATGCTAAAACAGACAAGCTGGTGAATGAAAGGCTTATTAGTATGGCCTATGGTCAAATTGGAATGATGCAAGCTACTGCAGGATTCTTCACTTATTTTGTGATTCTTGCTGAGAATGGATTCCTGCCTTCAGACCTAATAGGAGTGCGTGTTAATTGGGATGATAAATATTACAATGATCTAGAAGACAGCTATGGCCAACAATGGACTTATGAACGAAGAAAAATTGTGGAGTACACATGCCATACTGCATTCTTTGCCAGCATAGTAATTGTGCAGTGGGCCGATCTAATCATCTGTAAGACCAGGAGGAACTCCATCCTACAACAGGGAATGAAaaacaaaatattaatatttggaTTGTTTGAGGAGACCGCTTTGGCAGCTTTCTTATCCTACTGCCCAGGCATGGACGTAGCTCTTAGAATGTATCCACTGAAACCAAGCTGGTGGTTCTGTGCCTTCCCATATTCACTGCTCATCTTCCTTTATGATGAGGCAAGAAGGTACCTCCTTAGACGGAACCCAGGCGGATGGGTGGAAAAGGAGACATACTACTAAGAAAACCCCCTTTTCAACTATGAAATTCATGATAAATGCACAATGCCCTAGAAATAAATGGGCACACAAAATATACACTCCCAATTTGCATTAATCATACAAATGTACTGCTATATTTTAATAAAGGTGAACTGAGACAGTAA

Function

symbol description
atp1a1a.4 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; immature eye; integument; nervous system; and pronephros. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).

GO:

id name namespace
GO:0006754 ATP biosynthetic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931789.2 True 3372 mRNA 0.44 22 5331920 5340521
XM_026931790.2 False 3371 mRNA 0.44 22 5331920 5340516

Neighbor

gene id symbol gene type direction distance location
LOC113537467 atp1a1a.4,LOC108258577,LOC108429867,LOC108429865,LOC108429869,LOC108258578,LOC108258576,LOC108429866,LOC107717913,LOC107653679 coding downstream 15725 5288685 ~ 5316195 (-)
LOC113537466 atp1a1a.4,LOC108258574,LOC108429869,LOC108429865,LOC108258576,LOC107717913 coding downstream 54828 5269510 ~ 5277092 (-)
LOC113537465 atp1a1a.1,LOC108258575,LOC108429870,LOC107653678,LOC107717912,LOC107718011,LOC107698904,LOC107555257 coding downstream 63722 5253693 ~ 5268198 (-)
brat1 brat1 coding downstream 219173 5069360 ~ 5112747 (-)
knstrn knstrn coding downstream 704679 4619201 ~ 4627241 (-)
urp2 LOC108258299 coding upstream 69090 5409611 ~ 5412773 (-)
wu:fa56d06 LOC108258903 coding upstream 209032 5549553 ~ 5557090 (-)
n6amt1 n6amt1,LOC107563652 coding upstream 249251 5589772 ~ 5596095 (-)
jam2a jam2 coding upstream 555815 5896336 ~ 5908867 (-)
mrpl39 mrpl39 coding upstream 573438 5913959 ~ 5920199 (-)
G370845 NA non-coding downstream 81824 5249832 ~ 5250096 (-)
G370837 NA non-coding downstream 91644 5240065 ~ 5240276 (-)
G370836 NA non-coding downstream 93908 5236722 ~ 5238012 (-)
LOC113537335 NA non-coding downstream 140273 5190347 ~ 5191647 (-)
G370784 NA non-coding downstream 141620 5190075 ~ 5190300 (-)
G370853 NA non-coding upstream 2234 5342755 ~ 5343080 (-)
LOC113537484 NA non-coding upstream 5074 5345595 ~ 5365148 (-)
LOC113537576 NA non-coding upstream 75105 5415626 ~ 5429432 (-)
G370941 NA non-coding upstream 165591 5506112 ~ 5506317 (-)
G370942 NA non-coding upstream 167581 5508102 ~ 5508369 (-)
G370658 NA other downstream 442539 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 2478709 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 2757449 2566757 ~ 2574471 (-)
mdh1b mdh1b other downstream 3499191 1824204 ~ 1832729 (-)
G369586 NA other downstream 3536696 1776319 ~ 1795224 (-)
LOC113537294 NA other upstream 48383 5388904 ~ 5395012 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other upstream 189471 5529992 ~ 5547032 (-)
LOC113537623 NA other upstream 601518 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 675205 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 1018118 6358639 ~ 6363203 (-)

Expression


Co-expression Network