acta1a (acta1,LOC102689871,LOC108414322,LOC108430668,LOC103383882)


Basic Information

Item Value
gene id acta1a
gene name acta1,LOC102689871,LOC108414322,LOC108430668,LOC103383882
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15181633 ~ 15186072 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931794.2
CACATTCCTGACGTCTGGAGGCGGGAGGACGGAGGAGCGCTGGGGGTATAAGAGCAGTCGTGCTCGCTTTCTGTCTGCAGCTGGAACTAGCGTCCAAGGCACCCTCGAGCTTCTTTCTTCTGCGGGAACGAGCACAGGAACCCATTCAACATGTGCGATGACGAAGAGACCACCGCCCTGGTGTGTGATAACGGTTCTGGCCTGGTGAAGGCTGGTTTTGCTGGAGATGACGCCCCCAGAGCCGTCTTCCCCTCCATCGTCGGTCGCCCTCGCCACCAGGGTGTCATGGTTGGTATGGGTCAGAAAGACTCCTATGTGGGAGATGAGGCCCAGAGCAAGAGAGGTATCCTGACCCTGAAGTACCCCATCGAGCACGGCATCATCACCAACTGGGATGATATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGTGTGGCCCCTGAGGAACACCCCACCCTGCTCACAGAGGCACCCCTGAACCCCAAGGCCAACCGTGAGAAGATGACCCAGATCATGTTTGAGACCTTCAACGTTCCCGCCATGTATGTGGCCATCCAGGCCGTGCTGTCCCTGTACGCCTCCGGCCGTACCACCGGTATTGTGCTGGACTCTGGTGATGGTGTGACACACAATGTGCCCATCTATGAGGGTTACGCTTTGCCCCACGCCATCATGCGTCTGGATCTGGCCGGTCGTGATCTGACTGACTACCTGATGAAGATCCTGACTGAGCGTGGCTACTCTTTTGTCACCACTGCTGAGCGTGAGATTGTGCGTGACATCAAGGAGAAGTTGTGTTACGTTGCCCTGGACTTTGAGAACGAGATGGCCACTgcagcctcctcctcctccctggAGAAGAGCTATGAGCTTCCCGACGGTCAGGTGATCACCATTGGAAATGAACGTTTCCGCTGCCCAGAGACCCTCTTCCAGCCTTCCTTCATCGGCATGGAGTCCGCTGGCATCCATGAGACCGCCTACAACAGCATCATGAAGTGCGACATTGACATCAGGAAGGACCTGTACGCCAACAACGTCCTGTCTGGTGGCACCACCATGTACCCCGGTATCGCTGACCGTATGCAGAAGGAGATCACTGCTCTGGCCCCCAGCACAATGAAGATCAAGATCATCGCTCTCCCCGAGCGTAAGTACTCCGTCTGGATCGGTGGCTCCATCCTGGCTTCCCTGTCTACCTTCCAGCAGATGTGGATCAGCAAGCAGGAGTACGATGAGGCCGGTCCTAGCATCGTCCACCGCAAGTGCTTCTAAGTTCTCGGCCTCTCCAGGACCAACCTCTCGCTCGGGAACTCGCTGTCACGAATTTCTGAGCTGTTATTATTTCAGAACAGCAGCTTCCTTCCTCCTAGTTTACAAACACATCAACATCAAGAAATGTAGGGGGTAAAAACAAGGAATCATGTACACTCTGTTGTATGGAGATTATTTACTGAAGACTGTAACATTGTTTTTATGTGAAGGAGCCAcgttactgcaaaaaaaaatggattctgGAACCAATCGTCAGCGTCATTAAGCTATGATAGCGGAGTGAAGCTGACATCAAGTGGGTTGGATGGGCCACAACAGGGCTCAGGCGATCAAATCTGTCATCCTTCGACAATGCAAAGCCTCCCTTTTAaaccactgtactgtacatctgATTGCCTTGAGTCCTTTTCtacatctgtctgtgtttttttttcttcttttcaaccCAATGATCAAcagaataatacaaaataaataaataaataaataaaatctctatTTTTGAA

Function

symbol description
acta1 Predicted to enable ADP binding activity; ATP binding activity; and myosin binding activity. Predicted to be a structural constituent of cytoskeleton. Involved in skeletal muscle thin filament assembly. Located in actin filament; stress fiber; and striated muscle thin filament. Implicated in congenital fiber-type disproportion and nemaline myopathy 3.

NR:

description
actin, alpha cardiac muscle 1

GO:

id name namespace
GO:0036302 atrioventricular canal development biological_process
GO:0045471 response to ethanol biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0042493 response to drug biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0003272 endocardial cushion formation biological_process
GO:0030049 muscle filament sliding biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005829 cytosol cellular_component
GO:0070062 extracellular exosome cellular_component
GO:0031674 I band cellular_component
GO:0042643 obsolete actomyosin, actin portion cellular_component
GO:0017022 myosin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K12314 ACTC1; actin, alpha cardiac muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931794.2 True 1790 mRNA 0.52 7 15181633 15186072

Neighbor

gene id symbol gene type direction distance location
ccsapa LOC108258518 coding downstream 805 15172738 ~ 15180828 (-)
dla LOC108258338,LOC103023774,LOC108438608,LOC107746130,LOC107703728,LOC107598533,LOC107700799,LOC107594356 coding downstream 38832 15136233 ~ 15142801 (-)
dcaf15 dcaf15,LOC106592097,LOC106594349 coding downstream 68340 15104177 ~ 15113293 (-)
rln3b rln3 coding downstream 104017 15074671 ~ 15077616 (-)
spast spast coding downstream 109288 15060921 ~ 15072345 (-)
nup133 nup133,LOC107700801,LOC107729904,LOC107746127,LOC106958119,LOC106908639,LOC107729676 coding upstream 5233 15191305 ~ 15208140 (-)
ndufaf5 ndufaf5,LOC107684300,LOC107583196,LOC107594415 coding upstream 50788 15236860 ~ 15243012 (-)
LOC113537336 NA coding upstream 64539 15250611 ~ 15258294 (-)
LOC113537242 NA coding upstream 75974 15262046 ~ 15272834 (-)
btbd3a btbd3,btbd3a,LOC107747408,LOC107594463,LOC107675618,LOC107583195,LOC103354797 coding upstream 100038 15286110 ~ 15291362 (-)
LOC117596121 NA non-coding downstream 22987 15158146 ~ 15158646 (-)
G376615 NA non-coding downstream 28513 15152892 ~ 15153120 (-)
G376613 NA non-coding downstream 33648 15147785 ~ 15147985 (-)
G376608 LOC108259073 non-coding downstream 49343 15132017 ~ 15132290 (-)
G376602 NA non-coding downstream 80621 15099016 ~ 15101012 (-)
G376671 jag1 non-coding upstream 211596 15397668 ~ 15401270 (-)
G376670 LOC107729604,LOC103360699,LOC104950577,LOC105910653 non-coding upstream 275062 15461134 ~ 15462622 (-)
G376755 NA non-coding upstream 362320 15548392 ~ 15549785 (-)
G376758 NA non-coding upstream 425550 15611622 ~ 15653021 (-)
G376763 NA non-coding upstream 488735 15674807 ~ 15679171 (-)
triobpa LOC108259073 other downstream 52377 15117512 ~ 15129256 (-)
akt3b akt3b,LOC108259077,LOC108438606,LOC107594289,LOC107703832,LOC107729704,LOC101071975 other downstream 220581 14910662 ~ 14961052 (-)
b3gnt2a LOC108259010 other downstream 431899 14740132 ~ 14749734 (-)
ifngr1 NA other downstream 468987 14697239 ~ 14712646 (-)
G376143 NA other downstream 497305 14682387 ~ 14684328 (-)
dpy30 dpy30,LOC107684266 other upstream 226352 15412424 ~ 15458205 (-)
G376956 NA other upstream 731556 15917628 ~ 15920553 (-)
khsrp khsrp other upstream 743681 15929753 ~ 15942730 (-)
vps54 vps54,LOC107709616 other upstream 777804 15963876 ~ 15984959 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other upstream 966847 16152919 ~ 16164370 (-)

Expression


Co-expression Network