n6amt1 (n6amt1,LOC107563652)


Basic Information

Item Value
gene id n6amt1
gene name n6amt1,LOC107563652
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 5589772 ~ 5596095 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931827.2
CTCCAACTACCACAATGCATCGCTGATATCAACCGGAAGCGGAAGCTGTGCACGTGCACGCACACAACAGTGGTGAAAAGAGGAGCGCTGCGATACTCGGCTACGCGGTTTGTTTAgAACGTGTCCATTAGCTATGTCATGCTGAAGTACCCGACTCCTCTGTACTCCCATGCTGGTCATGGGCCTTTCTCAGAGGTATATGAGCCAGCAGAAGACTCTTTCCTTTTGATTGATACCTTGGAGAAGGATGCTGAATTGCTGCGGCGAAGCAAgccTGCTGTCTGCCTTGAGGTTGGCAGTGGCTCAGGTGTGGTCTCTGCTTTTCTGGCATCAGTAACCGGAGCTGAAGCATTGTATCTCTGCACTGACTTGAACCCGGCAGCAGCTCAGTGCACAGCAGAGACATCTCGCCGCAATAACCTCCACCTGCAGCCAGTTATAACCGACCTGACTGAGTGTCTGATGCCCAGACTGAATGGAATGGTGGATGTTCTTCTTTTCAACCCTCCATATGTAGTTACACCATCCGCGGAGGTGGGCAGTCAGGGCATTGAAGCATCCTGGGCAGGAGGAAAGAGAGGCAGGGAGGTGATGGACAGATTCTTCCCCATGGTTTCACAGTTATTATCCAAACAGGGCCTGTTCTACCTTGTTACAGTGTCAGATAACAATCCAGAGGAGATTCTGTCACTGCTTGGTGACTCCGGGTTAAGAGGAGAGGTGTGTCTGTCTCGTCAGGCGGGGAGAGAAAAGCTGTCCATCCTGCGCTTCAGCAAGAGTGACATCACAGGACCGTGAATAACACAACTGCACTACATACTGACTGAAATCCTCTCTGTATTCCCAAAAGCAGAGTGAAGCAAGAAAACAATAAGCGATTTGAGTGGCAGTCAAAATCAGTAAAATTAACTTCCATGTAAAGTTACTGTTATCTCAAGAAAACAATACACACTGTTCTTGCTTGACCATGCTAGTCTTTCTGCAGCTATCTTGGTAGCTGTAGTGTTGGTGAATTTTGATCTGGAAGGGTGACCTTGGACATTCTTAAAGGgttacaatgaaaaatatttttgaaga
>XM_034300092.1
ggaagggaaagCTGGTGCTGTTTCAGAGGCTCAGGAAGTGATGATGCTGGAGCTGTACTTCCGTCCAGTGGGGCAGGAAGCATGGCGTCTCGCGCGCTCTGTGGTAGTTCTCAGGATGCAATATGAAAGCAGCTCTGTATCACATCTGCACCTTGGATGTGAGagcagtccatctcagggcagaATCAGCTTCAGAATGACTGGCTCACTGgAACGTGTCCATTAGCTATGTCATGCTGAAGTACCCGACTCCTCTGTACTCCCATGCTGGTCATGGGCCTTTCTCAGAGGTATATGAGCCAGCAGAAGACTCTTTCCTTTTGATTGATACCTTGGAGAAGGATGCTGAATTGCTGCGGCGAAGCAAgccTGCTGTCTGCCTTGAGGTTGGCAGTGGCTCAGGTGTGGTCTCTGCTTTTCTGGCATCAGTAACCGGAGCTGAAGCATTGTATCTCTGCACTGACTTGAACCCGGCAGCAGCTCAGTGCACAGCAGAGACATCTCGCCGCAATAACCTCCACCTGCAGCCAGTTATAACCGACCTGACTGAGTGTCTGATGCCCAGACTGAATGGAATGGTGGATGTTCTTCTTTTCAACCCTCCATATGTAGTTACACCATCCGCGGAGGTGGGCAGTCAGGGCATTGAAGCATCCTGGGCAGGAGGAAAGAGAGGCAGGGAGGTGATGGACAGATTCTTCCCCATGGTTTCACAGTTATTATCCAAACAGGGCCTGTTCTACCTTGTTACAGTGTCAGATAACAATCCAGAGGAGATTCTGTCACTGCTTGGTGACTCCGGGTTAAGAGGAGAGGTGTGTCTGTCTCGTCAGGCGGGGAGAGAAAAGCTGTCCATCCTGCGCTTCAGCAAGAGTGACATCACAGGACCGTGAATAACACAACTGCACTACATACTGACTGAAATCCTCTCTGTATTCCCAAAAGCAGAGTGAAGCAAGAAAACAATAAGCGATTTGAGTGGCAGTCAAAATCAGTAAAATTAACTTCCATGTAAAGTTACTGTTATCTCAAGAAAACAATACACACTGTTCTTGCTTGACCATGCTAGTCTTTCTGCAGCTATCTTGGTAGCTGTAGTGTTGGTGAATTTTGATCTGGAAGGGTGACCTTGGACATTCTTAAAGGgttacaatgaaaaatatttttgaaga

Function

symbol description
n6amt1 Predicted to enable S-adenosylmethionine-dependent methyltransferase activity and protein methyltransferase activity. Predicted to act upstream of or within methylation. Predicted to be part of eRF1 methyltransferase complex. Orthologous to human N6AMT1 (N-6 adenine-specific DNA methyltransferase 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006479 protein methylation biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0008276 protein methyltransferase activity molecular_function

KEGG:

id description
K19589 N6AMT1; release factor glutamine methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931827.2 False 1077 mRNA 0.48 7 5589772 5596095
XM_034300092.1 True 1172 mRNA 0.48 7 5589772 5595936

Neighbor

gene id symbol gene type direction distance location
wu:fa56d06 LOC108258903 coding downstream 32682 5549553 ~ 5557090 (-)
urp2 LOC108258299 coding downstream 176999 5409611 ~ 5412773 (-)
LOC113537353 atp1a1a.4,LOC108429865,LOC108258576,LOC107717913,LOC107653679,LOC107555265 coding downstream 249251 5331920 ~ 5340521 (-)
LOC113537467 atp1a1a.4,LOC108258577,LOC108429867,LOC108429865,LOC108429869,LOC108258578,LOC108258576,LOC108429866,LOC107717913,LOC107653679 coding downstream 273577 5288685 ~ 5316195 (-)
LOC113537466 atp1a1a.4,LOC108258574,LOC108429869,LOC108429865,LOC108258576,LOC107717913 coding downstream 312680 5269510 ~ 5277092 (-)
jam2a jam2 coding upstream 300241 5896336 ~ 5908867 (-)
mrpl39 mrpl39 coding upstream 317864 5913959 ~ 5920199 (-)
mrpl16 mrpl16 coding upstream 367657 5963752 ~ 5969065 (-)
txnl4b txnl4b coding upstream 374945 5971040 ~ 5973439 (-)
blzf1 blzf1 coding upstream 380282 5976377 ~ 5983797 (-)
LOC117596170 NA non-coding downstream 71392 5510716 ~ 5518380 (-)
G370942 NA non-coding downstream 81403 5508102 ~ 5508369 (-)
G370941 NA non-coding downstream 83455 5506112 ~ 5506317 (-)
LOC113537576 NA non-coding downstream 160340 5415626 ~ 5429432 (-)
LOC113537484 NA non-coding downstream 224624 5345595 ~ 5365148 (-)
G371117 NA non-coding upstream 284381 5880476 ~ 5885612 (-)
LOC117596178 NA non-coding upstream 290751 5886846 ~ 5891797 (-)
G371121 NA non-coding upstream 296231 5892326 ~ 5895688 (-)
G371147 ercc5 non-coding upstream 397394 5993489 ~ 5994747 (-)
G371152 NA non-coding upstream 401908 5998003 ~ 5998159 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 42740 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 194760 5388904 ~ 5395012 (-)
G370658 NA other downstream 700391 4843329 ~ 4889381 (-)
LOC117596167 NA other downstream 2736561 2843212 ~ 2853211 (-)
LOC113535702 mx1 other downstream 3015301 2566757 ~ 2574471 (-)
LOC113537623 NA other upstream 345944 5942039 ~ 5952313 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other upstream 419631 6015726 ~ 6033393 (-)
LOC113537742 LOC108258591 other upstream 762544 6358639 ~ 6363203 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 1274471 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 1462740 7058835 ~ 7068531 (-)

Expression


Co-expression Network