LOC113537384 (prss23,LOC107570079,LOC106575973)


Basic Information

Item Value
gene id LOC113537384
gene name prss23,LOC107570079,LOC106575973
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 6606600 ~ 6610907 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931834.2
GCTGCACTGCAGCCTGACCGAGTCTCGCGCTCGCCTCCACCCGCTCAGCACCGCACATGGACTCAGCTCCTCTCACAGCACGTCTCCTTCAGGAAAGCCTCATGGACACTTTTGACGAGATGATATCTGAGGAAGACGGGAATGAGCGACGCGACATCACCTTTCCACCCCATTCCTCATCTCTTTAAACGGACTTTCTGTGGATTTTGCTCAGAACACCTGACCtgatctgatctctctctctctctctctctctgagctacAGTTCTACCAGTATGGCATCCGTGCTCCATCCTGTCCTGTTCCTTCTACTTCAGTTACTTCATGTTCAGTCAAGCTTCCATCAGAAGCCCCAGTGGCCTTTGCAGCGTGTGCCTGTAGTCCTTCCTCAACAGACTGAGGAGCGTCCGCCCCCTCATTTCATCGGCCCAGCTCATCTGGAAGTGACCTCTTCCTGTGGTCCCGAGTGTCACAAGAAAGCCCCAACACCCAGCTACTGGGACCTGCGAAGCTTCCTGTCCTATGAGACTCTCCACTCAAATGGCCAGCTGACTGAAACAGTTGTGGGAATCTATGGCTTCAACCCAAACATGCTGAAGAGCCCTGCCGCTGAGCAGGGACGTTCCAGAGCCAAGCGCCAGATCTTTGGCCATGATGGTCGCTTCAGCATTGTGGGCCAGGACTTCCTGCTGAACTACCCCTTTTCGACTGCTGTGAAGCTCTCCACAGGGTGCTCAGGCACGCTAGTGGGTAACCAGCATGTTCTCACTGCAGCCCACTGCATCCATGATGGAAAGAACTACGTAAAAGGTGCACAGAGGTTGCGTGTGGGTTTTCTGAAGCCACGGCAGAAGGACCAACCATCTAACAACAGCACTGACAACAAGATGAAGTTCCAGTGGATCAGAGTCAAGCGTACCCATGTGCCCAAGGGCTGGATAAAAGGCAACGCTAATGAAATTGGCATGGACTATGATTACGCCCTCCTGGAACTCAAGAAGACTCACAAGCGTAAACACATGAAGCTGGGAGTGAGTCCTGCTGCCCAGCAACTGCCTGGTAAACGAGTGCAGTTCTCCGGCTTCGACAACGATCGAGCAGGCCAGCTGGTCTACCGCTTCTGCAAAGCCGGGGATGAAACCTACGACCTTCTGTATCAGCATTGTGATGCTCAGCCTGGAGCTAGCGGCTCTGGTGTTTATGCCCGGCTGTGGGACCGCAGGCGCCGCCGCTGGGAGCGAAAGGTGATCGGCATCTTTTCGGGACACCAGTGGGTGGACCTCAATGGTGCCCCCCAGGAGTTTAACGTAGCAGTGCGCATCACGCCTCTTAAATATGCCCAGATCTGCTACTGGATCAAAGGGAATTATGTGGACTGCAGAGAAGGCTGAACTTAAGCTTCAGTATTATCCTTACCTTAAGTAAAGTTCTGTGCATCCTCTAGATTCATTCAAATGGAGTTTAAACACCTACGAATACATGAAACACTGGCATGTAAACACTGAATGAACTtaacacacccattcacacactgtaAATATTCAGAAATTACAAGAATTTCTAGAATTTCTCTTATCTACAATTACGTAACCAAATAATTTTGCACAGTCTTTAGTTTCAGCTGGCCTTTACAATAGTATAGCTCCAATTTAGGATTCATCTTTGATAAGTCAACAAAACTGTGGTTAAGCTTTCCATTGGAGCAAAAGAGCAAACAATTGTGAATAGATAGAAAGAACATGAAAGTGGCAGGATGGACCTAACATCACCAAAGATGGTTTTCAATGACTGTGGACTTCTCCAGTACAAAGCACTGTAGGCTTTAAGCCTTTGTGAACGTTTTCATTGTGAAGAATGTACTCCAGTTTAACCAAAGGTGCTTTTTAAAATAGCTATCCAAGTCAAACATACAGAAGGCTTTAACTACTGGATGAACTCTGTCTGCGTGGATTGGCATGTGGTTTCTATTCTGTTAGCGACCCCTAGTGGTCAAAGACATTACATCTAATGGCCACAAGACCCAAGTCTGAAAAAGCGTTGGCGGATGGTGCTTCCTTACACTAATCACAGAACTTTTTTTGAATTAAATAAGTACTCGGAGATGCAGATGTTATATACTTTAAATGTTATATACCAATGTCAGCACCTAAAGCactttgaatttttaaattactgATTTCTTTAGTCATTAACAGCTTTGAATGATAATTCACTCTGTACTAtacaaatgtttattaaatgctTTTGAAAGGAA
>XM_026931835.2
GCTGCACTGCAGCCTGACCGAGTCTCGCGCTCGCCTCCACCCGCTCAGCACCGCACATGGACTCAGCTCCTCTCACAGCACGTCTCCTTCAGGAAAGCCTCATGGACACTTTTGACGAGATGATATCTGAGGAAGACGGGAATGAGCGACGCGACATCACCTTTCCACCCCATTCCTCATCTCTTTAAACGGACTTTCTGTGGATTTTGCTCAGAACACCTGACCtgatctgatctctctctctctctctctctctgagctacAGCACTGGGTGTTGGTCTTTTGTCAAGAGACTTTTCTTCTGTCCAGTTCTACCAGTATGGCATCCGTGCTCCATCCTGTCCTGTTCCTTCTACTTCAGTTACTTCATGTTCAGTCAAGCTTCCATCAGAAGCCCCAGTGGCCTTTGCAGCGTGTGCCTGTAGTCCTTCCTCAACAGACTGAGGAGCGTCCGCCCCCTCATTTCATCGGCCCAGCTCATCTGGAAGTGACCTCTTCCTGTGGTCCCGAGTGTCACAAGAAAGCCCCAACACCCAGCTACTGGGACCTGCGAAGCTTCCTGTCCTATGAGACTCTCCACTCAAATGGCCAGCTGACTGAAACAGTTGTGGGAATCTATGGCTTCAACCCAAACATGCTGAAGAGCCCTGCCGCTGAGCAGGGACGTTCCAGAGCCAAGCGCCAGATCTTTGGCCATGATGGTCGCTTCAGCATTGTGGGCCAGGACTTCCTGCTGAACTACCCCTTTTCGACTGCTGTGAAGCTCTCCACAGGGTGCTCAGGCACGCTAGTGGGTAACCAGCATGTTCTCACTGCAGCCCACTGCATCCATGATGGAAAGAACTACGTAAAAGGTGCACAGAGGTTGCGTGTGGGTTTTCTGAAGCCACGGCAGAAGGACCAACCATCTAACAACAGCACTGACAACAAGATGAAGTTCCAGTGGATCAGAGTCAAGCGTACCCATGTGCCCAAGGGCTGGATAAAAGGCAACGCTAATGAAATTGGCATGGACTATGATTACGCCCTCCTGGAACTCAAGAAGACTCACAAGCGTAAACACATGAAGCTGGGAGTGAGTCCTGCTGCCCAGCAACTGCCTGGTAAACGAGTGCAGTTCTCCGGCTTCGACAACGATCGAGCAGGCCAGCTGGTCTACCGCTTCTGCAAAGCCGGGGATGAAACCTACGACCTTCTGTATCAGCATTGTGATGCTCAGCCTGGAGCTAGCGGCTCTGGTGTTTATGCCCGGCTGTGGGACCGCAGGCGCCGCCGCTGGGAGCGAAAGGTGATCGGCATCTTTTCGGGACACCAGTGGGTGGACCTCAATGGTGCCCCCCAGGAGTTTAACGTAGCAGTGCGCATCACGCCTCTTAAATATGCCCAGATCTGCTACTGGATCAAAGGGAATTATGTGGACTGCAGAGAAGGCTGAACTTAAGCTTCAGTATTATCCTTACCTTAAGTAAAGTTCTGTGCATCCTCTAGATTCATTCAAATGGAGTTTAAACACCTACGAATACATGAAACACTGGCATGTAAACACTGAATGAACTtaacacacccattcacacactgtaAATATTCAGAAATTACAAGAATTTCTAGAATTTCTCTTATCTACAATTACGTAACCAAATAATTTTGCACAGTCTTTAGTTTCAGCTGGCCTTTACAATAGTATAGCTCCAATTTAGGATTCATCTTTGATAAGTCAACAAAACTGTGGTTAAGCTTTCCATTGGAGCAAAAGAGCAAACAATTGTGAATAGATAGAAAGAACATGAAAGTGGCAGGATGGACCTAACATCACCAAAGATGGTTTTCAATGACTGTGGACTTCTCCAGTACAAAGCACTGTAGGCTTTAAGCCTTTGTGAACGTTTTCATTGTGAAGAATGTACTCCAGTTTAACCAAAGGTGCTTTTTAAAATAGCTATCCAAGTCAAACATACAGAAGGCTTTAACTACTGGATGAACTCTGTCTGCGTGGATTGGCATGTGGTTTCTATTCTGTTAGCGACCCCTAGTGGTCAAAGACATTACATCTAATGGCCACAAGACCCAAGTCTGAAAAAGCGTTGGCGGATGGTGCTTCCTTACACTAATCACAGAACTTTTTTTGAATTAAATAAGTACTCGGAGATGCAGATGTTATATACTTTAAATGTTATATACCAATGTCAGCACCTAAAGCactttgaatttttaaattactgATTTCTTTAGTCATTAACAGCTTTGAATGATAATTCACTCTGTACTAtacaaatgtttattaaatgctTTTGAAAGGAA

Function

symbol description
prss23 Predicted to enable serine-type endopeptidase activity and serine-type exopeptidase activity. Acts upstream of or within atrioventricular valve development; endocardium morphogenesis; and regulation of Notch signaling pathway. Is expressed in atrioventricular canal; atrium; cardiac ventricle; and pectoral fin. Orthologous to human PRSS23 (serine protease 23).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K09627 PRSS23; serine protease 23

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931834.2 False 2254 mRNA 0.47 2 6606600 6610907
XM_026931835.2 True 2298 mRNA 0.47 3 6606600 6610907

Neighbor

gene id symbol gene type direction distance location
LOC113537739 LOC108258596 coding downstream 105987 6468517 ~ 6500613 (-)
dusp27 dusp27,LOC102309085 coding downstream 145049 6451575 ~ 6461551 (-)
LOC113537523 pou2f1 coding downstream 156681 6432009 ~ 6449919 (-)
LOC113537540 LOC108258592,LOC108429813,LOC107739159,LOC107739162,LOC107751098,LOC107694465,LOC107570071 coding downstream 202512 6403262 ~ 6404088 (-)
f7l LOC108258590 coding downstream 214134 6384899 ~ 6392466 (-)
LOC113537292 ccdc81 coding upstream 30157 6641064 ~ 6660087 (-)
hikeshi hikeshi,ck073 coding upstream 49878 6660785 ~ 6666073 (-)
eed eed coding upstream 57316 6668223 ~ 6675921 (-)
nfkbiz nfkbiz coding upstream 80757 6691664 ~ 6699031 (-)
cep97 cep97 coding upstream 92527 6703434 ~ 6714568 (-)
G371487 NA non-coding downstream 39655 6563849 ~ 6566945 (-)
G371454 NA non-coding downstream 70596 6529397 ~ 6536004 (-)
G371134 mettl21c,LOC108429839 non-coding downstream 601810 6001838 ~ 6004790 (-)
G371135 NA non-coding downstream 604987 6001179 ~ 6001613 (-)
G371153 NA non-coding downstream 607126 5998848 ~ 5999474 (-)
G371595 NA non-coding upstream 197586 6808493 ~ 6815071 (-)
G371632 NA non-coding upstream 256837 6867744 ~ 6867960 (-)
G371625 NA non-coding upstream 268963 6879870 ~ 6881780 (-)
G371634 NA non-coding upstream 280859 6891766 ~ 6901343 (-)
G371787 NA non-coding upstream 540531 7151438 ~ 7153159 (-)
LOC113537742 LOC108258591 other downstream 243397 6358639 ~ 6363203 (-)
tpp2 tpp2,si:ch73-244f7.4,LOC107665822 other downstream 573207 6015726 ~ 6033393 (-)
LOC113537623 NA other downstream 654287 5942039 ~ 5952313 (-)
LOC113537235 son,LOC107698912,LOC107709257,LOC107698212,LOC107571887,LOC107555269,LOC565999 other downstream 1059568 5529992 ~ 5547032 (-)
LOC113537294 NA other downstream 1211588 5388904 ~ 5395012 (-)
pspc1 pspc1,LOC108258933,LOC108434730 other upstream 259659 6870566 ~ 6910546 (-)
LOC113537271 LOC108258282 other upstream 447928 7058835 ~ 7068531 (-)
LOC113537388 arhgap6 other upstream 746364 7357271 ~ 7478509 (-)
G372086 LOC108258915 other upstream 1107356 7718263 ~ 7724795 (-)
fam155a LOC108258331 other upstream 1301303 7912210 ~ 7993096 (-)

Expression


Co-expression Network