LOC113537394


Basic Information

Item Value
gene id LOC113537394
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15986787 ~ 15999994 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931850.2
CGAGATAGATATTTGTTGCAATTTGGGTTTTCTAAACTCTAAtgcatgttaaaaataatagcaATTGTCTAGTTCAACATCCATGGTTTGGATTATACAAATATGGACATTATTTGTAAGTTTTGTGAGATAATCGGGAAGGACTGCACTCCATGATTTCAACTCTCTGAGGATTGGTGGCGATTAGCCGAAAACTGAGTCTGATTGAATCCCGTACGGAGTTCTCCGCCACAGATTCGGAAGTGGAGAAGCAGATAGCGGTCTGGATGACCGGAAAAGCCTGGAATTTTGCCGCGAGGTTGTTTCATACCGCGGGGACACGCCATGTTTCCACAGTCAGGCCTGCTACCAGGGGTTTGTGAGTGAATGATAGGTAATTATACAGGCAGCCCTGATGTTACTCAGATTGACTCCTCCCCTTTCTCTGCTGTTTCTGCTCATGATTTCAGGAGTTGCTGCAGGAGTTGCTGTTTCTCAGGACTGGGATGTGTATTACACACCAAAGTCTATCTGTGCTCTAAAGGGATCTACAGTGACCATGGGCTGCAGATACACATATCCAGCTGGTTACACAGTTGAGAGAGGTATCTGGAGCAGAGAGTTGGTTACAGATAAAGAGCCTCCTGATCTGACTTCAGACCCAAAGTACAGCGGCAGGGTTCAGTACCTCGGAGACACATTGCGTGACTGCAGTCTCAGACTGAGTGATGTGACAGAACAGGACCAAGGCAAATACTACTTCAGATTTATAACAACATTTGCTGGAGGAAAGTATCAAGGTCAAGATGGAGTTGACCTTTCTGTCACAGAGCTCGAGGTACAGATTCCTGATAGAGTGATTGAAGGAGATGCAGTCACTCTCACCTGTAAAACCAGGAACAGACTGAGTGGCAATACAACATTTATCTGGTACAGAAGTGGACGTCGTTTATCCTCCTCCACTAACCTGCTCCGTCTGCCATCAGTCAGTCAGAGCGATGTAGGCAGATACAGCTGTGCTGTACAAGATAGTCAGTCCTGTGATGTCACTCTTGATGTCCAGTATCCTCCAAAGAGAGTCTCAGTGTCCATCAGACCCTCTGGTAAGATAGTAGAGGGccgttcagtgactctgacctgcagcagtaATGCTAAACCACCTGCACAGAACTACACCTGGTATAAGGGAGCATCCTATATCAGAAGAGGAAAAACCTACACCATCAACAAGACCAGCTCTGAGGACAGTGGAAATTACACGTGCCGGGCTGGAAATGAACATGGACAACAGTCCTCTACTGCTGTGTCTCTGAATGTCCTGTCTTCTCCAAAGAGAGTCTCAGTGTCCATCAGTCCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGCACACCTACACCTGGCATAAAGGAACATCCTATATAGGAACGGGAAACACCTACACCATCAACAAGATCAGCTCTGAGGACAGTGGAGAATACAAGTGCAAGTCCAGTAATCGATACGGAGAGAAATACTCTGATGGAGTgactttaaatgttttgtATCCCCCTAAGAATGTCTCAGTGTCCATCAGTCGCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGTATAGCTGGTTTAAAGGAACATCACCTAAAAGTAATGGAAAAACCTACACCTTTAGAAACATCAGCTCTGAGGACCGTGGAGTGTATAAATGCAAGTCTAGCAATCAACATGGAGAGAAATATTCTGATGAAGTTACTATAAAGGTTTTGTatCCTCCAAAGAGAGTCTCAGTGTCCATCAGTCCCTCTGGTGAGATAGTGGAGGgtagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGACCTACACCTGGTTTAAAGGAACATCCTATATAGGAACAGGACAATCTTACATCATTAACAGGATCAGCTCTGAGGACAGTGGAGAGTACAAGTGCAAGTGCAGTAATCAACATGGAGAGAAATACTCTGATGGAGcaactttaaatgttttgtATCCCCCTAAGAATGTCTCAGTGTCCATCAGTCCCTCTGGTGAGAGAGTGgagggcagttcagtgactctgaactgcagcagtgatgctaacccACCTTTGCAGAACTACACCTGGTATAAGGTGGATGAAAGCTCACCTGTAGGATCTGGACAGAGTTACAGCTTCACTCTGAGGTTCAGCAACAGTGGAACGTTTTACTGCGTGGCTCAGAATAAATATGGGAATCAGACAGCAGCTGCAGTGGCTCTCACTCTAAATGGGGGCACAAATTTAGTTCTGTATGTAGTTCTTGGAGTGACAGTTGGATGTGGATGTTTATTTGCCATCATTGGTGTTTTATGTATGAGgagaaagagaagaggaggTTCAGCTGATGATACCAAGTCTGGCCAGAATGTTCACTCCAGTCCTACTGAAGACACGTACACAGCTCTTGATCTTCAGACCAGGTCCTCCAGTGAAGTGTATGACACACTTGGAAACATTTACTGCAATCCTACTGAAGACACGTACACAGCTCTTGATCTTCAGACCAGGTCCTCCAGTGACGTGTACAGCACACTTGCAacGGATCACCCGAGTCCTCCTGATGACACGTACACAGCTATGGATTCTCAGTCCATCTCTCCTGATTACTACAATTTACCAACTGCAAGAAAACAACAGTGAGATCATCAACATCGACACCatgtcaagagagagagagagagagagagagagagagagagacagaagataGATGACCAATGCTAGTATAGTTCTGTTTTTGAGCTGTGGATCAATATTGAACTCTATCTTTAAATAGTTGAAGAGTGAGAGCTTTACATTTAtgaacacatatatatattgagATTAACAACAGTGTGCAGGGATTTTGAACCGTTCTGCTTTGCACCTATGCATCCTTTTTCTAcgtgtgctgtatttttttttttcctctttttaattagaggtttatatttttatatttacctgCTAAAGTAACACACTGTACTCATGCTTCACTTATTCTTTAAGCACAAAAATGTGTGCTATTAAGGatttacacaataaaatcaaatatgATGTATAATC
>XM_026931851.2
CGAGATAGATATTTGTTGCAATTTGGGTTTTCTAAACTCTAAtgcatgttaaaaataatagcaATTGTCTAGTTCAACATCCATGGTTTGGATTATACAAATATGGACATTATTTGTAAGTTTTGTGAGATAATCGGGAAGGACTGCACTCCATGATTTCAACTCTCTGAGGATTGGTGGCGATTAGCCGAAAACTGAGTCTGATTGAATCCCGTACGGAGTTCTCCGCCACAGATTCGGAAGTGGAGAAGCAGATAGCGGTCTGGATGACCGGAAAAGCCTGGAATTTTGCCGCGAGGTTGTTTCATACCGCGGGGACACGCCATGTTTCCACAGTCAGGCCTGCTACCAGGGGTTTGTGAGTGAATGATAGGTAATTATACAGGCAGCCCTGATGTTACTCAGATTGACTCCTCCCCTTTCTCTGCTGTTTCTGCTCATGATTTCAGGAGTTGCTGTTTCTCAGGACTGGGATGTGTATTACACACCAAAGTCTATCTGTGCTCTAAAGGGATCTACAGTGACCATGGGCTGCAGATACACATATCCAGCTGGTTACACAGTTGAGAGAGGTATCTGGAGCAGAGAGTTGGTTACAGATAAAGAGCCTCCTGATCTGACTTCAGACCCAAAGTACAGCGGCAGGGTTCAGTACCTCGGAGACACATTGCGTGACTGCAGTCTCAGACTGAGTGATGTGACAGAACAGGACCAAGGCAAATACTACTTCAGATTTATAACAACATTTGCTGGAGGAAAGTATCAAGGTCAAGATGGAGTTGACCTTTCTGTCACAGAGCTCGAGGTACAGATTCCTGATAGAGTGATTGAAGGAGATGCAGTCACTCTCACCTGTAAAACCAGGAACAGACTGAGTGGCAATACAACATTTATCTGGTACAGAAGTGGACGTCGTTTATCCTCCTCCACTAACCTGCTCCGTCTGCCATCAGTCAGTCAGAGCGATGTAGGCAGATACAGCTGTGCTGTACAAGATAGTCAGTCCTGTGATGTCACTCTTGATGTCCAGTATCCTCCAAAGAGAGTCTCAGTGTCCATCAGACCCTCTGGTAAGATAGTAGAGGGccgttcagtgactctgacctgcagcagtaATGCTAAACCACCTGCACAGAACTACACCTGGTATAAGGGAGCATCCTATATCAGAAGAGGAAAAACCTACACCATCAACAAGACCAGCTCTGAGGACAGTGGAAATTACACGTGCCGGGCTGGAAATGAACATGGACAACAGTCCTCTACTGCTGTGTCTCTGAATGTCCTGTCTTCTCCAAAGAGAGTCTCAGTGTCCATCAGTCCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGCACACCTACACCTGGCATAAAGGAACATCCTATATAGGAACGGGAAACACCTACACCATCAACAAGATCAGCTCTGAGGACAGTGGAGAATACAAGTGCAAGTCCAGTAATCGATACGGAGAGAAATACTCTGATGGAGTgactttaaatgttttgtATCCCCCTAAGAATGTCTCAGTGTCCATCAGTCGCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGTATAGCTGGTTTAAAGGAACATCACCTAAAAGTAATGGAAAAACCTACACCTTTAGAAACATCAGCTCTGAGGACCGTGGAGTGTATAAATGCAAGTCTAGCAATCAACATGGAGAGAAATATTCTGATGAAGTTACTATAAAGGTTTTGTatCCTCCAAAGAGAGTCTCAGTGTCCATCAGTCCCTCTGGTGAGATAGTGGAGGgtagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGGAGACCTACACCTGGTTTAAAGGAACATCCTATATAGGAACAGGACAATCTTACATCATTAACAGGATCAGCTCTGAGGACAGTGGAGAGTACAAGTGCAAGTGCAGTAATCAACATGGAGAGAAATACTCTGATGGAGcaactttaaatgttttgtATCCCCCTAAGAATGTCTCAGTGTCCATCAGTCCCTCTGGTGAGAGAGTGgagggcagttcagtgactctgaactgcagcagtgatgctaacccACCTTTGCAGAACTACACCTGGTATAAGGTGGATGAAAGCTCACCTGTAGGATCTGGACAGAGTTACAGCTTCACTCTGAGGTTCAGCAACAGTGGAACGTTTTACTGCGTGGCTCAGAATAAATATGGGAATCAGACAGCAGCTGCAGTGGCTCTCACTCTAAATGGGGGCACAAATTTAGTTCTGTATGTAGTTCTTGGAGTGACAGTTGGATGTGGATGTTTATTTGCCATCATTGGTGTTTTATGTATGAGgagaaagagaagaggaggTTCAGCTGATGATACCAAGTCTGGCCAGAATGTTCACTCCAGTCCTACTGAAGACACGTACACAGCTCTTGATCTTCAGACCAGGTCCTCCAGTGAAGTGTATGACACACTTGGAAACATTTACTGCAATCCTACTGAAGACACGTACACAGCTCTTGATCTTCAGACCAGGTCCTCCAGTGACGTGTACAGCACACTTGCAacGGATCACCCGAGTCCTCCTGATGACACGTACACAGCTATGGATTCTCAGTCCATCTCTCCTGATTACTACAATTTACCAACTGCAAGAAAACAACAGTGAGATCATCAACATCGACACCatgtcaagagagagagagagagagagagagagagagagagacagaagataGATGACCAATGCTAGTATAGTTCTGTTTTTGAGCTGTGGATCAATATTGAACTCTATCTTTAAATAGTTGAAGAGTGAGAGCTTTACATTTAtgaacacatatatatattgagATTAACAACAGTGTGCAGGGATTTTGAACCGTTCTGCTTTGCACCTATGCATCCTTTTTCTAcgtgtgctgtatttttttttttcctctttttaattagaggtttatatttttatatttacctgCTAAAGTAACACACTGTACTCATGCTTCACTTATTCTTTAAGCACAAAAATGTGTGCTATTAAGGatttacacaataaaatcaaatatgATGTATAATC
>XM_034300055.1
CGAGATAGATATTTGTTGCAATTTGGGTTTTCTAAACTCTAAtgcatgttaaaaataatagcaATTGTCTAGTTCAACATCCATGGTTTGGATTATACAAATATGGACATTATTTGTAAGTTTTGTGAGATAATCGGGAAGGACTGCACTCCATGATTTCAACTCTCTGAGGATTGGTGGCGATTAGCCGAAAACTGAGTCTGATTGAATCCCGTACGGAGTTCTCCGCCACAGATTCGGAAGTGGAGAAGCAGATAGCGGTCTGGATGACCGGAAAAGCCTGGAATTTTGCCGCGAGGTTGTTTCATACCGCGGGGACACGCCATGTTTCCACAGTCAGGCCTGCTACCAGGGGTTTGTGAGTGAATGATAGGTAATTATACAGGCAGCCCTGATGTTACTCAGATTGACTCCTCCCCTTTCTCTGCTGTTTCTGCTCATGATTTCAGGAGTTGCTGCAGGAGTTGCTGTTTCTCAGGACTGGGATGTGTATTACACACCAAAGTCTATCTGTGCTCTAAAGGGATCTACAGTGACCATGGGCTGCAGATACACATATCCAGCTGGTTACACAGTTGAGAGAGGTATCTGGAGCAGAGAGTTGGTTACAGATAAAGAGCCTCCTGATCTGACTTCAGACCCAAAGTACAGCGGCAGGGTTCAGTACCTCGGAGACACATTGCGTGACTGCAGTCTCAGACTGAGTGATGTGACAGAACAGGACCAAGGCAAATACTACTTCAGATTTATAACAACATTTGCTGGAGGAAAGTATCAAGGTCAAGATGGAGTTGACCTTTCTGTCACAGAGCTCGAGGTACAGATTCCTGATAGAGTGATTGAAGGAGATGCAGTCACTCTCACCTGTAAAACCAGGAACAGACTGAGTGGCAATACAACATTTATCTGGTACAGAAGTGGACGTCGTTTATCCTCCTCCACTAACCTGCTCCGTCTGCCATCAGTCAGTCAGAGCGATGTAGGCAGATACAGCTGTGCTGTACAAGATAGTCAGTCCTGTGATGTCACTCTTGATGTCCAGTATCCTCCAAAGAGAGTCTCAGTGTCCATCAGACCCTCTGGTAAGATAGTAGAGGGccgttcagtgactctgacctgcagcagtaATGCTAAACCACCTGCACAGAACTACACCTGGTATAAGGGAGCATCCTATATCAGAAGAGGAAAAACCTACACCATCAACAAGACCAGCTCTGAGGACAGTGGAAATTACACGTGCCGGGCTGGAAATGAACATGGACAACAGTCCTCTACTGCTGTGTCTCTGAATGTCCTGTCTTCTCCAAAGAGAGTCTCAGTGTCCATCAGTCCCTCTGGTGAGATAGTGgagggcagttcagtgactctgacctgcagcagtgatgctaacccACCTGTGCACACCTACACCTGGCATAAAGGAACATCCTATATAGGAACGGGAAACACCTACACCATCAACAAGATCAGCTCTGAGGACAGTGGAGAATACAAGTGCAAGTCCAGTAATCGATACGGAGAGAAATACTCTGATGGAGTgactttaaatgttttgtATCCCCCTAAGAATGTCTCAGTGTCCATCAGTCCCTCTGGTGAGAGAGTGgagggcagttcagtgactctgaactgcagcagtgatgctaacccACCTTTGCAGAACTACACCTGGTATAAGGTGGATGAAAGCTCACCTGTAGGATCTGGACAGAGTTACAGCTTCACTCTGAGGTTCAGCAACAGTGGAACGTTTTACTGCGTGGCTCAGAATAAATATGGGAATCAGACAGCAGCTGCAGTGGCTCTCACTCTAAATGGGGGCACAAATTTAGTTCTGTATGTAGTTCTTGGAGTGACAGTTGGATGTGGATGTTTATTTGCCATCATTGGTGTTTTATGTATGAGgagaaagagaagaggaggTTCAGCTGATGATACCAAGTCTGGCCAGAATGTTCACTCCAGTCCTACTGAAGACACGTACACAGCTCTTGATCTTCAGACCAGGTCCTCCAGTGAAGTGTATGACACACTTGGAAACATTTACTGCAATCCTACTGAAGACACGTACACAGCTCTTGATCTTCAGACCAGGTCCTCCAGTGACGTGTACAGCACACTTGCAacGGATCACCCGAGTCCTCCTGATGACACGTACACAGCTATGGATTCTCAGTCCATCTCTCCTGATTACTACAATTTACCAACTGCAAGAAAACAACAGTGAGATCATCAACATCGACACCatgtcaagagagagagagagagagagagagagagagagagacagaagataGATGACCAATGCTAGTATAGTTCTGTTTTTGAGCTGTGGATCAATATTGAACTCTATCTTTAAATAGTTGAAGAGTGAGAGCTTTACATTTAtgaacacatatatatattgagATTAACAACAGTGTGCAGGGATTTTGAACCGTTCTGCTTTGCACCTATGCATCCTTTTTCTAcgtgtgctgtatttttttttttcctctttttaattagaggtttatatttttatatttacctgCTAAAGTAACACACTGTACTCATGCTTCACTTATTCTTTAAGCACAAAAATGTGTGCTATTAAGGatttacacaataaaatcaaatatgATGTATAATC

Function

GO: NA

KEGG:

id description
K16680 ED; echinoid

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931850.2 True 3148 mRNA 0.44 15 15986787 15999994
XM_026931851.2 False 3136 mRNA 0.44 15 15986787 15999994
XM_034300055.1 False 2635 mRNA 0.44 13 15986787 15999994

Neighbor

gene id symbol gene type direction distance location
slc25a23a slc25a23a,LOC108258471,LOC103026535,LOC107747161,LOC107594260 coding downstream 31507 15945851 ~ 15955280 (-)
avpi1 NA coding downstream 91792 15886599 ~ 15894995 (-)
cdc25d LOC108258441 coding downstream 117233 15859404 ~ 15869554 (-)
pgam1b pgam1b,pgam1a,LOC108258456,LOC107700858,LOC103038634,LOC107598490,LOC107703810,LOC108436383 coding downstream 128470 15853218 ~ 15858317 (-)
exosc1 exosc1,LOC107598491,LOC107700859 coding downstream 134664 15842505 ~ 15852123 (-)
LOC113537693 NA coding upstream 12278 16012272 ~ 16024511 (-)
LOC113537692 NA coding upstream 32005 16031999 ~ 16037975 (-)
LOC117596132 NA coding upstream 45734 16045728 ~ 16051187 (-)
peli1a LOC108258444 coding upstream 56950 16056944 ~ 16069586 (-)
sertad2a NA coding upstream 106101 16106095 ~ 16111872 (-)
G376982 NA non-coding downstream 38708 15947648 ~ 15948079 (-)
G376961 NA non-coding downstream 103364 15881973 ~ 15883423 (-)
G376934 NA non-coding downstream 164282 15812366 ~ 15822505 (-)
G376840 NA non-coding downstream 207085 15778247 ~ 15779702 (-)
G376807 NA non-coding downstream 269841 15716192 ~ 15716946 (-)
G377087 NA non-coding upstream 165704 16165698 ~ 16169196 (-)
G377084 NA non-coding upstream 178616 16178610 ~ 16179122 (-)
G377125 NA non-coding upstream 263909 16263903 ~ 16265647 (-)
G377171 NA non-coding upstream 349383 16349377 ~ 16350060 (-)
G377172 NA non-coding upstream 350255 16350249 ~ 16350459 (-)
vps54 vps54,LOC107709616 other downstream 1828 15963876 ~ 15984959 (-)
khsrp khsrp other downstream 44057 15929753 ~ 15942730 (-)
G376956 NA other downstream 66234 15917628 ~ 15920553 (-)
dpy30 dpy30,LOC107684266 other downstream 528582 15412424 ~ 15458205 (-)
triobpa LOC108259073 other downstream 857531 15117512 ~ 15129256 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other upstream 152925 16152919 ~ 16164370 (-)
si:ch211-286b5.5 LOC108258470,LOC108443951,LOC103031617,LOC105901802,LOC101074561,LOC103154361,LOC100701095,LOC105012046,LOC107391594,LOC105938735 other upstream 216756 16216750 ~ 16221615 (-)
LOC113537389 NA other upstream 421267 16421261 ~ 16475431 (-)
si:dkey-76b14.2 LOC108258416,LOC105891053 other upstream 566259 16566253 ~ 16583137 (-)
slc25a10 slc25a10,LOC108411213,LOC107747133,LOC107712055,LOC107569289,LOC100693267 other upstream 621173 16621167 ~ 16741989 (-)

Expression


Co-expression Network