samd1b (samd1,LOC108258478,LOC107573600,LOC107580959,LOC103458189,LOC108442215,LOC106534668)


Basic Information

Item Value
gene id samd1b
gene name samd1,LOC108258478,LOC107573600,LOC107580959,LOC103458189,LOC108442215,LOC106534668
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16379306 ~ 16388207 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931857.2
ACGCGCAGGGTTTCCGGTCCACCTTAAGCGCCAACGCAGGCGTACAGCGGGGCTTCCGCTTCGTCCGCGGCCGGGCTCGAGCGGAGCTGAGGAGCGGAGcgcttctttttctctctgctttttttttctctccttttcacCGTCGCTTCATCTGGAGACAAGCGGAGCAGCGCAACGAGGCCACGAATCCTACCGGAAAACCTCCCTCCGCTGCAGTCGCGTGCgctgagaagaaaaaacaagcaaacaaacaaacaaacaatacaaaacacaaacaaacaatctaATATTTTCAACGATGTCCGAACCGCGGTACCGAGAGTGGATCCTGGAGACGATCGACTCGCTGCGCTCGAGGAAAGCGCGACCGGACCTCGAGAGGATCTGCCGGATGGTGCGCAGGAGACACGGCTCCGACCCAGACCGCACGCGGGCCGAGCTCGAGAAGCTCATCCAGGAGCAAACTGTGCTGAAAGTTAACTACAAGGGCTCTGTGTCGTACCGGAACGCCGCCAAAGTGCAACGGAAATGCCGACGGAAGGTCGAGCAGGCGGGCGAGCGCACCAAACACGCCGCTTTCGACAACAGTGGCAGTAGTAGTAACGCCAAGAACGACGACAACATCAGCGCGCGCAGTCCCGCGGACCGGGAGGAGCGCGAGCCGACGCCGTGCAGAGATCCCTCACCCAGCAGCTGCTCGCGCTCCGCTGAAGAGAAacgggaagaagaagaagaagaagacgaggaaggagaggaagaagcgGTTTTGTCTCCTGCGACAGGCGAAATCACCAGTTTCACGAGTTGCGACGGGAGAAACGGCTCGAGTGACACCTCCAGTCCCGCCGCTGGACGGGTCGaggggggaggaggaggaggaggaggagaagagacgCGCTCTGTACTCGGCCACGCGAGCACCGACCTGCCCGAGCCCGAGCCCGAGCCGGAACCGGAGCGGCGAACTTGCACGAGCGCTCGAAACAATAAGCAACACGCGCCCCAACTCAGGGCTGCAAAGAGCGGCGTCAAAGCGGCGGATCTGGGCGACCGGCTCGTGGCGGCCGTGTGGAGTCTGAGCGAGCGGAACAGCCGGGGTCACGCGCCGCTCGGGCTCAAAGAGATCCTGGGCTACCTCGGCACGCAGGCCGCGCACGCGGACGGCGAGAAGCTGACCCGCCACCGCGTCAAAGTGGTGCTGGAGCGCGAGATCGAGAAAGGTCGCCTGCGCAGGACGCGCCTCGGTCACATCACCGTGCCCGCGAGGAGATGGGGGGGGAGCACGGGGGCGGCCAAAGCGTCCGCGCGACTCCCGGCGAACACGAGCAGCGCGCCGCAGGACAGGCGCATCTCAAAGCAGGAAGAAGTAAAGGAGGAGGAGTCAATGGAGGTGGAAAGCAAGGAGGATGGCAAGATGGATGAAGAAGCCAAGCCTCCGACACAGCTCGAGCCCCAGAGCGCCAAACCTGAAGGAGAAGCAGACGTCAAAGTTCACGCGCCACTTTCAGCCGGCGTGGAGGTGAAGGCGTGCGGTGTTACTCACACACCAGTGATCATGGAGGAGGAGCTCCGGCCTTCACCGCTGTCATCGCCAGCGAAACTGAGTTCGGTTCCTCAGGAAGCCGAACAGTGTGGCacggaaggtGAAATGGTGATGCAGGGAGAGGCGATTCACACAGGAAGTTTAACGCAAGATCAAAGAGAAGCCATAACTGACCaagtgcacacactcacacagGATGAAGAGGTTGTCGTCTCAGACAGTGTCACGATTCCAGCCTCAATTCCCATTAAAAGTTattcAGTTTGTAAGGCTGAGGTGGGCGTGTCCTCCTGTCTGCTGACTCCATCTGCCTCTCCAGGAGCAGCTGAGGAGCGAGGGATGAACGGAGGAGTTTTTGTAAAGTCCGAGTCCAGCATCACAAATCCGGTCGACTGGACGGTGGCAGACGTCGCCAGTTATTTCACAGCGGCGGGATTTCCAGAGCAGGCTCTCGCCTTCAGGATGCAGGAAATCGACGGGAAGTCACTCCTCCTGATGCAGCGCAACGATGTCCTGACCGGCCTGTCAATCAGACTTGGCCCTGCCCTCAAGATCTACGAGCGCCATGTGAAGGTTTTGCAGAGGACCCACTTCCAGGACGACGAAgctttctgctgaggcacacactCTCGGTTCTATAGCGTGCACACACtcagatttctctctctcacacacaatggAGCTTTCTACAGAGACACAagcaactcacacacacactctaatgcACTGCGTACTGGACTTTGCCTTCCCTGTTAACAGTGGAACATTCCAGATATTTGTTTTACAGATACTagcgcacactcacacacgttaTTATCTCTTTCCATTCCTTTGAGAGGAACAACGAAGAACATCCAGTGAGGCATGAAAATGCTTCTGAGACATCACTGCACACTACAGAGTGACAAAAAAACAGGGTCATTTCATTAATAATGGACAGATCTTGTGTGTGCAGCTGAGATGGATGTGATTCCTCGGCTCATGAACTTTGACCTGGGATCAAATTCAACAGTCGATATCGCAGACGTGTGTGATGTCCATTAGGGGGCAGCAGATGGCTGGAGAAAAACACCCCAAAACACGGAAGTGTCTGCTTGGTTGATGATGGCATGTTTGAGGACTTCATCGTTGTCTGAAATCAGACTACGTGCACAGGATTTCACACCAACGCTGGACGTGCTTATTCGACTGcgcaacattttctttttttgagcaAGAGCTCACAGAGATCTGTTAGAACGTATTGCTGAGTCACAGGTTTTGACCTAAATAGCTGCGGCACTGCATCCCAGTCTTCCCTGTGCTTTTGGCTATGTGCTGTGTGCAGAGATTCTAGAACGGATTCTACAACCCACCAAGCTTTCATAGCAAGTTCTAGAATCTGTGCCAGAAAATGAAACTTATTATTGGAATCTGTCAGATTCTAGAAGAGGTTCTAGAATCTTCCCAAAGACCATTAGAAAGTTCTGGATTCTgtatcagaaaatgaaaaatgatttatagaATCTGTCAGATTCTAGAACAGGTTGTATAACCTTCCAAAGTTCCATAGAATGTTCTAGATTCTGGATTCTGTGTAAGAAGGACTTGGCTAGATTTGTTTTCTTGCTGAGCTCATATGAAGTGTACACTCtatgccaaaagtttgtgcacccctgaccatcacacccatatgtgtttgttgaacgtctcatttcagatttattccctgtgtgtttgctgttataataagctccactct

Function

symbol description
samd1 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be located in cytoplasm and extracellular region. Predicted to be active in nucleus.

NR:

description
PREDICTED: atherin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931857.2 True 3284 mRNA 0.54 7 16379306 16388207

Neighbor

gene id symbol gene type direction distance location
ndufb7 ndufb7,LOC107573602,LOC107694602 coding downstream 6099 16368498 ~ 16373207 (-)
dnajb1b dnajb1 coding downstream 30849 16341237 ~ 16348457 (-)
LOC113537406 LOC108258437 coding downstream 133015 16238209 ~ 16246291 (-)
LOC113537690 NA coding downstream 143159 16224807 ~ 16236147 (-)
si:ch211-286b5.4 LOC108258440 coding downstream 163271 16209255 ~ 16216035 (-)
prkacab prkaca,prkacab,LOC107694605,LOC107703755,LOC106526233 coding upstream 10712 16398919 ~ 16411731 (-)
asf1bb asf1b,asf1bb,LOC107747137,LOC103026007,LOC107703766 coding upstream 25742 16413949 ~ 16418007 (-)
LOC113537390 LOC108258708,LOC108258415 coding upstream 109578 16497785 ~ 16525406 (-)
LOC117595682 LOC108258708,LOC108258415 coding upstream 145627 16533834 ~ 16559160 (-)
zgc:65894 tubb4a,LOC107711200,LOC103367161,LOC108411210,LOC103372938,LOC100712088,LOC108258713,LOC103468788 coding upstream 195172 16583379 ~ 16589630 (-)
G377172 NA non-coding downstream 28847 16350249 ~ 16350459 (-)
G377171 NA non-coding downstream 29246 16349377 ~ 16350060 (-)
G377125 NA non-coding downstream 113659 16263903 ~ 16265647 (-)
G377084 NA non-coding downstream 200184 16178610 ~ 16179122 (-)
G377087 NA non-coding downstream 210110 16165698 ~ 16169196 (-)
G377191 NA non-coding upstream 887 16389094 ~ 16390803 (-)
G377244 NA non-coding upstream 99583 16487790 ~ 16488131 (-)
LOC113547464 NA non-coding upstream 210706 16598913 ~ 16600222 (-)
G377359 NA non-coding upstream 218123 16606330 ~ 16607547 (-)
G377422 LOC108258724 non-coding upstream 468572 16856779 ~ 16858709 (-)
si:ch211-286b5.5 LOC108258470,LOC108443951,LOC103031617,LOC105901802,LOC101074561,LOC103154361,LOC100701095,LOC105012046,LOC107391594,LOC105938735 other downstream 157691 16216750 ~ 16221615 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other downstream 214936 16152919 ~ 16164370 (-)
vps54 vps54,LOC107709616 other downstream 394347 15963876 ~ 15984959 (-)
khsrp khsrp other downstream 436576 15929753 ~ 15942730 (-)
G376956 NA other downstream 458753 15917628 ~ 15920553 (-)
LOC113537389 NA other upstream 33054 16421261 ~ 16475431 (-)
si:dkey-76b14.2 LOC108258416,LOC105891053 other upstream 178046 16566253 ~ 16583137 (-)
slc25a10 slc25a10,LOC108411213,LOC107747133,LOC107712055,LOC107569289,LOC100693267 other upstream 232960 16621167 ~ 16741989 (-)
G377416 LOC108258724 other upstream 456805 16845012 ~ 16851663 (-)
LOC113525650 LOC108258801 other upstream 788575 17176782 ~ 17194992 (-)

Expression


Co-expression Network