LOC113537406 (LOC108258437)


Basic Information

Item Value
gene id LOC113537406
gene name LOC108258437
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16238209 ~ 16246291 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931865.2
CCTGATAGACATGTGGTAGGTCTATATAagagaataaaacaattaaagtaGAGTCCAAACTCCAGGATTTGCAGGAAGTAAAGTTGCAgcaaagtgaaaagagaaactGAACCAAAGACGTTCTCTGAAGAGAAATGTCTGACTCTGACGATTCCAGCTCCTTCCCATTTCCCAATTCTAGGAAAAACCCACCAAGGGAGGCAAAGAGacaGAGTTCCAACAATCAGTCAGTAAAAGGACGATGTGATATAGACGTTCAGTCAACAGAATGTAAATCTTTGAACACACGGCCCAATTTTCAGGGAGATAAGCAAGATGATTCCAGCAGTTCAAGACATCGGGCGATaaaagagaatgagaagaaaaacaTCAATGAAAAGTTAAAGGAAACAGAAGAGGAGAACGTGCGACTTGAGAGATTGTTAGAGGAGGTGAATGAAAAGAAGACTGAAATAGAAGAGAAGAACGCACGACTTGAGAGAGCGTTAGAGGAAGCAAATGAAAAGAAGACTGAAACAGAAGAGAAGAACGCACGACTTGAGAGCGCGTTAGAGAAAAAGAGTCGTTTTTTAATTTGGCTGACCTCTGTGCTGATTGTGGTTCCACTGTGTATTGGATTGCACTTAGCTTTCAAAGgGCATGACATGAACCATCCTGAGCTTAGACTGATGTTGGTGGGGAAAACTGGAGCAGGAAAGAGTGCATCAGGAAACACCATCCTGGGTGAAGAGGCCTTTAGAGTCGAGGCGTCTCCTGCATCTGTGACTGCAAGCTGTATGAAGAAGAACAAAGTCTTGGATGGAAGAAACATCACCATAATTGACACTCCGGGTGTCATGGACACGTGGCTAATATCTAACCAAGCAGCCCACAGTGCACATGAATGTATCTCCATGTCTTCTCCTGTTCCTCATGTGTTCCTTCTGGTAATCAGACTGGGAAGATTCACGGTGGAGGAGCGCAATGCTGTGAAGTGGATTCAGGAGAACTTTGGAGAAGAAGCTCTGAAGTTCACCATGATTCTGTTCACTGGTGGAGATCTGCTggaagggaaacaagtggagAAATTTATCAGTAATAGTTATGATCTTCAGAATCTTGTAGACACCTGCGAAGCTAGATATCATGTTTTTAACAACTATGAACAAAGTAACCGCACTCAAGTCACAGAGTTGTTTGAAAAGATAAATGTATTACTACACAAGAACATGGGTTACTTTTACACAAAAGAGCTTCATCAGAAGGTCCAGAGAAGCAccagagaagaggaagagagaaagagagtgattttagagaaagagattaaaatggaggaagagagaaagagagccaaGGTGGAAAAAGTGATCAGACAGGAAGAGGAATTAAAGAGGAAACAGCAGAAAGAAGAGATGGAAGTGGAGGAGAGGAGTAAGATTAATGAGATGGTAATTAAACTGAGAGATGAGCAATACGAGAACAAAAATCTTAAGGCAGAGTTAGAAAAAGCATACAAGACATCTTTCTGGTTCAAGGTCTCAACTGGCATGCTCATTCTAATTCTGATCACTGTGGTTTGctttaagaaatgaaaatagCTGAACCATTGGGAGATTTTCACAAATAACCAGGCCAAGgcttaaaataatattaagccTTAAtattaagataataataaaatacagcaaataGAAATTAAACTCACCCACTCACAATGCGAATATGGCTTtacaaatgataataatgagTTTCAGGACCCAACATGTATGTATAGTTTTGAATGTTGTTTTAGGGTGGTGTTAGCACTTGTGGCTTTAATTAAACTTTTGTTGAAACTCTTTAATTGCAAAGACCCAAAAATTCAGATCTGAAGCAAATTCTACAGTGGAAAACAGGCATGATCAGGTGATCATCAAACAGTGTACACCAGGCTAGGAGTTAcagtttgttaaaataaaactataaaggGTTCCTGTATGTTCATGTGAtatatgcaaatacaaatatactgGTGTCAATACTTCTCAATTTAACTGCatcttagctttttttttcagaatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931865.2 True 2040 mRNA 0.39 6 16238209 16246291

Neighbor

gene id symbol gene type direction distance location
LOC113537690 NA coding downstream 2062 16224807 ~ 16236147 (-)
si:ch211-286b5.4 LOC108258440 coding downstream 22174 16209255 ~ 16216035 (-)
nanos3 NA coding downstream 29648 16207565 ~ 16208561 (-)
cc2d1a cc2d1a coding downstream 37942 16179312 ~ 16200267 (-)
mri1 mri1,LOC107594353,LOC107703717,LOC106595636,LOC107700835 coding downstream 59714 16170823 ~ 16178495 (-)
dnajb1b dnajb1 coding upstream 94946 16341237 ~ 16348457 (-)
ndufb7 ndufb7,LOC107573602,LOC107694602 coding upstream 122207 16368498 ~ 16373207 (-)
samd1b samd1,LOC108258478,LOC107573600,LOC107580959,LOC103458189,LOC108442215,LOC106534668 coding upstream 133015 16379306 ~ 16388207 (-)
prkacab prkaca,prkacab,LOC107694605,LOC107703755,LOC106526233 coding upstream 152628 16398919 ~ 16411731 (-)
asf1bb asf1b,asf1bb,LOC107747137,LOC103026007,LOC107703766 coding upstream 167658 16413949 ~ 16418007 (-)
G377084 NA non-coding downstream 59087 16178610 ~ 16179122 (-)
G377087 NA non-coding downstream 69013 16165698 ~ 16169196 (-)
G376982 NA non-coding downstream 290130 15947648 ~ 15948079 (-)
G376961 NA non-coding downstream 354786 15881973 ~ 15883423 (-)
G376934 NA non-coding downstream 415704 15812366 ~ 15822505 (-)
G377125 NA non-coding upstream 17612 16263903 ~ 16265647 (-)
G377171 NA non-coding upstream 103086 16349377 ~ 16350060 (-)
G377172 NA non-coding upstream 103958 16350249 ~ 16350459 (-)
G377191 NA non-coding upstream 142803 16389094 ~ 16390803 (-)
G377244 NA non-coding upstream 241499 16487790 ~ 16488131 (-)
si:ch211-286b5.5 LOC108258470,LOC108443951,LOC103031617,LOC105901802,LOC101074561,LOC103154361,LOC100701095,LOC105012046,LOC107391594,LOC105938735 other downstream 16594 16216750 ~ 16221615 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other downstream 73839 16152919 ~ 16164370 (-)
vps54 vps54,LOC107709616 other downstream 253250 15963876 ~ 15984959 (-)
khsrp khsrp other downstream 295479 15929753 ~ 15942730 (-)
G376956 NA other downstream 317656 15917628 ~ 15920553 (-)
LOC113537389 NA other upstream 174970 16421261 ~ 16475431 (-)
si:dkey-76b14.2 LOC108258416,LOC105891053 other upstream 319962 16566253 ~ 16583137 (-)
slc25a10 slc25a10,LOC108411213,LOC107747133,LOC107712055,LOC107569289,LOC100693267 other upstream 374876 16621167 ~ 16741989 (-)
G377416 LOC108258724 other upstream 598721 16845012 ~ 16851663 (-)
LOC113525650 LOC108258801 other upstream 930491 17176782 ~ 17194992 (-)

Expression


Co-expression Network