dnajb1b (dnajb1)


Basic Information

Item Value
gene id dnajb1b
gene name dnajb1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16341237 ~ 16348457 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931890.2
GTACATGGATCCTGCAGAGATACTTTTAGACCTGCAACCTGAGGGAgtaacaacatcaacaacaagaTCTTCTTCCACCTGATTGGACGAGTGGTAACTTTGTCAGACTTCTGGTcaagtttttattattgttattatttaatttaaacctgtAGAGAAATCCCTAGATGGTGAGGATGGGAAAGGACTACTACAGCATTTTAGGGATTAAGAAAGGCGCGTCTGACGACGAGATTAAGAAAGCTTATCGCAAACAGGCTTTAAAATATCACCCGGATAAAAACAAGTCTCCCAACGCTGAAGAGAAGTTCAAGGAGATCGCGGAAGCCTACGACGTCCTGAGTGATCCGAAGAAGAAGGACATCTACGACAAATTTGGGGAAGAAGGGCTGAAGGGTGGCATTGGCGGAGGTGGCGGTGGGCCAAATGGCTCCGGCTTCACGTACACCTTCCAGGGTGACCCGCATGCCATGTTCACCGAGTTCTTTGGTGGGAGGAACCCCTTTGAGCACATCTTTGGTCGCGGCATGGGTGGCGATGATGACATGGATGTGGATGAGCCGTTTGCGAGCTTTGGCCTGGGCGGTGGGCGCCACTTTGGTGGGAGGATGGAGAAAAAGCAGGACCCACCGGTGACCCATGAGCTCCGCGTGAGCCTGGAGGAAGTGTTCAGTGGTTGCAccaagaaaatgaaaatctcGCGGCGCAGACTGAACCCAGACGGCCGCAGCACGCGCACAGAGGAAAAGATCCTCACGGTGGAGGTGAAAAAGGGCTGGAAGGAGGGAACCAAGATTACTTTCCCTAAAGAGGGCGACCAGACACCAAACAACATCCCCGCTGACATCATATTCACCGTGAAGGACAAACCACATCCGGTGTTTAAGAGAGACGGATCAGACATCATCTACCCAGCCAAGATCTCGCTCAAAGAAGCTCTCTGTGGTTGTACAGTAAAGGCCCCTACGTTGGACAAACGCACAATCTCCCTGCCTCTGCAAGACATCATCGTCCGTCCTGGGATGAAGCGGCGAATCACAGGCGAAGGCCTTCCTTTGCCTAAGAACCCAGAACGCCGTGGTGATTTAATCGTTGAGTTTGAGGTGAAATTTCCAGAGAGACTGACTCAGGATGCCAAGGACACTATTGCACGGGTCTTACCCTCGTAATGATTACACGTGACGATGTTGCGTCCACCGACTGAAAGCTGTGACGCATGAAACTGTGAACTGAGTAACGCTGAACTGCAAGACGGCGAGTCTCTCTGGATGACCAATCTTCTTTGCTGTGCTTTCCTCTTTTGCTCTCAACTGAAAAGACTGTTTTTCATAAAAGAGCTTATGTTTGAAATTCACTTTAAATGTACAGTGAGTGAAACTGTATGTACTACTGGGGGATATTCCACGAAGAGAGCAAACCTGATGAGCCAGACTTATTTCAACAAACCTGGCTAGTTTCtttcaatttcatttaaatgaaggAAGCTGATCTACGCTTTAGCTCCGTTACTTTGGCAACATATGCTTTTGGTCAATGCTGCTCAGGCTAATGTTGGAGCGTAGCTGATGAATGATGACATCTTGTTGAATTATttggtattttaaataaaataaactaaagttTGATTACGTATTCTGTTGGCCATTTTCTACCAGGCAGCTTCTATGCCTTTATTAAAACTCAGGGTATTTCCTTTTTCCATCTTGTAGAGTTTAATAAACAATCTCTGCTTTACGGGATTTAAAGGTTGctctttgtttactgtttttaattGACATTTTTGCTATTTCTGATTTCGGCGATTGATTATCGGGGCAGCTCAAATATCGCATGTAGTCATGTGAGCCTCGATTTATACAGCTTCTCTGGAATTAGCTTAAACATGTTGCACCTGGATTTTGTTAGTGAAACTCATTGAGCCTGGAGTCATCTGTCTGGTTAATCCAATCAAAACTGGATTTTATGAGCTTGCTTCGTGGAATAAATTCCTGGTGTTGAATGGCAGAAAGGACCATTAGGATCATGGTTCACATAGAacgtttctctgtctctctttttttttttcccttttttcttcccCCTGCTCTGTTCTTTGTGCACTTTGGCAGTTTGggattgtaaatattttgtatattcagTGGCGAGCTTGAGGTTTTATTTTGATTAGTACGGGTGCACTGAacccttttcccttttttcattcTGCATTTGACACAATACTAATATCAGCACTCTTACACAGATATCCTCACAGTGATTGATCTGAACGTGAGCTTCAAGTTACACGAGACATAATGGGACATGAAAGGCAGTGTTAGCTAACAACAGTTTGTGTCTGGTGCTCTTGTGTAAAAATGTAGGAAAGGTCAAATCTGGTCACATAGTAACACGGGTGGATATCTGGTCAGAGTCTGATGCAGATACATATTAGATTGTTGTATCAAAGTTTTCTCGGTTTTTTGGAACAGTGCAGGAACAACAggtgtgtttaaattttaatggACCTCTCAGTCTGACTAAAGATAAAATTGATTATATGTAACTACAGTATCTATATAAAATTGGTTGGTATGATGGAcatttgtgtgtatgaatgGAGTGAATTTATATCCAGAGATGTTAgaacaaacgtgtgtgtgttttttttgtttgtttgtttttgtttttgtttttttaacatgcatATTGGAGAGATGCGAGAGAGTGTATCAGTCCAGAACACTAAACATATAGGCTAAACACCCCATCTACACCCAGTTTAGCCTTACAGCTTTtagtgtatgaatgaatgaagcgcTTAACCCTatgggtgtgtgtttctgtctgatTCATCCTGAGTGGATCATAATGAAGCTCAAGCAAAAATAATGGACTAATGGATGATAGAATGGTCATCTATCATGCATGTAACCATGCTTATGATGCACAATGGCACATTGTGTCATAGAAATGACTAAACCTGTAGTATGTATGATTTAGTTTGGATAGTGGTGTAAAAAATCGGTTTTGAGAAAGACATAAATGACTACAGATCTACCAGATCTGGATTTCTAGAGCTTATAATTAAGTTTTGAGCTGTTCAGTGAGATGCATAACTCTGAGCTCACTACCACTCCAGATAAACACTAACGGgttgtgctgtgtgtaagaTCATCCAGATTAATAGTGTTGAtgggtttaaaaaagaaagaaacaaaaaaaagccaaatggTTCTCTGTGGGCTAAATTGTGACCAGTCAGGAAGAGTTTGTTTATTTCCccttactgcaaaaaaaaaaaaaaaaaaaaaac

Function

symbol description
dnajb1 Enables several functions, including ATPase binding activity; Hsp70 protein binding activity; and chaperone binding activity. Involved in several processes, including chaperone cofactor-dependent protein refolding; negative regulation of transcription from RNA polymerase II promoter in response to stress; and positive regulation of ATPase activity. Located in cytosol and nucleoplasm.

NR:

description
dnaJ homolog subfamily B member 1-like isoform X1

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09507 DNAJB1; DnaJ homolog subfamily B member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931890.2 True 3292 mRNA 0.42 3 16341237 16348457

Neighbor

gene id symbol gene type direction distance location
LOC113537406 LOC108258437 coding downstream 94946 16238209 ~ 16246291 (-)
LOC113537690 NA coding downstream 105090 16224807 ~ 16236147 (-)
si:ch211-286b5.4 LOC108258440 coding downstream 125202 16209255 ~ 16216035 (-)
nanos3 NA coding downstream 132676 16207565 ~ 16208561 (-)
cc2d1a cc2d1a coding downstream 140970 16179312 ~ 16200267 (-)
ndufb7 ndufb7,LOC107573602,LOC107694602 coding upstream 20041 16368498 ~ 16373207 (-)
samd1b samd1,LOC108258478,LOC107573600,LOC107580959,LOC103458189,LOC108442215,LOC106534668 coding upstream 30849 16379306 ~ 16388207 (-)
prkacab prkaca,prkacab,LOC107694605,LOC107703755,LOC106526233 coding upstream 50462 16398919 ~ 16411731 (-)
asf1bb asf1b,asf1bb,LOC107747137,LOC103026007,LOC107703766 coding upstream 65492 16413949 ~ 16418007 (-)
LOC113537390 LOC108258708,LOC108258415 coding upstream 149328 16497785 ~ 16525406 (-)
G377125 NA non-coding downstream 75590 16263903 ~ 16265647 (-)
G377084 NA non-coding downstream 162115 16178610 ~ 16179122 (-)
G377087 NA non-coding downstream 172041 16165698 ~ 16169196 (-)
G376982 NA non-coding downstream 393158 15947648 ~ 15948079 (-)
G376961 NA non-coding downstream 457814 15881973 ~ 15883423 (-)
G377171 NA non-coding upstream 920 16349377 ~ 16350060 (-)
G377172 NA non-coding upstream 1792 16350249 ~ 16350459 (-)
G377191 NA non-coding upstream 40637 16389094 ~ 16390803 (-)
G377244 NA non-coding upstream 139333 16487790 ~ 16488131 (-)
LOC113547464 NA non-coding upstream 250456 16598913 ~ 16600222 (-)
si:ch211-286b5.5 LOC108258470,LOC108443951,LOC103031617,LOC105901802,LOC101074561,LOC103154361,LOC100701095,LOC105012046,LOC107391594,LOC105938735 other downstream 119622 16216750 ~ 16221615 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other downstream 176867 16152919 ~ 16164370 (-)
vps54 vps54,LOC107709616 other downstream 356278 15963876 ~ 15984959 (-)
khsrp khsrp other downstream 398507 15929753 ~ 15942730 (-)
G376956 NA other downstream 420684 15917628 ~ 15920553 (-)
LOC113537389 NA other upstream 72804 16421261 ~ 16475431 (-)
si:dkey-76b14.2 LOC108258416,LOC105891053 other upstream 217796 16566253 ~ 16583137 (-)
slc25a10 slc25a10,LOC108411213,LOC107747133,LOC107712055,LOC107569289,LOC100693267 other upstream 272710 16621167 ~ 16741989 (-)
G377416 LOC108258724 other upstream 496555 16845012 ~ 16851663 (-)
LOC113525650 LOC108258801 other upstream 828325 17176782 ~ 17194992 (-)

Expression


Co-expression Network