rab1aa (rab1a,LOC107676578,LOC105021598,LOC107666439,LOC103035225,LOC108436370)


Basic Information

Item Value
gene id rab1aa
gene name rab1a,LOC107676578,LOC105021598,LOC107666439,LOC103035225,LOC108436370
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16118388 ~ 16126954 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931904.2
GCGTGTTGTTGAGATTTCACAACCCGGTTGCCATTTTTGTTAGCCAACTTACCCAGTGCACCCGGATCTCTGCTTCAACATTTCAAAGCTCAAAACCTGGACAACCATTTACCAAAAACCTTCTAATAAATTACAAcacagcagctttttttttttttttttttttttttttttggagcagaAAGAAGACACAAACCAAGCCTGATAATAAGGGAGTTTCTCTGGGCCAAGTGTCAGCCATGAACCCTGAATACGACTACCTGTTCAAACTGCTGCTGATTGGAGATTCTGGGGTCGGGAAGTCCTGCCTTCTCCTCCGATTTGCAGATGACACATATACAGAAAGCTACATCAGCACGATCGGCGTTGACTTCAAAATCAGAACAATAGAGCTGGAAGGCAAGACCATCAAACTACAGATTTGGGACACGGCGGGTCAGGAGAGGTTTCGCACCATCACCTCCAGCTACTACAGAGGAGCCCACGGCATCATCGTGGTCTATGACGTCACAGATCAGGAGTCATTCAACAATGTAAAGCAGTGGCTGCAGGAGATCGACCGCTATGCCAGCGAGAACGTCAACAAACTGCTTGTGGGCAACAAGTGTGACCTGACCACCAAGAAAGTAGTGGACTACACAACAGCCAAGGAGTTTGCGGACTCTCTGGGAATCCCGTTCCTGGAGGCCAGCGCTAAGAACTCCACCAACGTGGAGCAGGCCTTCATGACCATGGCGGCAGAGATTAAGAAGAAGATGGGACCAGGCGCCAGCGCGGGCGGCGCCGACAAATCAAACGTGAAGTTCCACAGCCAGCCGGTGAAGGCGTCCAGCGGAGGCTGCTGCTGAGTCCTGAACTCGCCCGAACACACAACGCACAAAGGAAGAGTGATGTTAGCGACCACCATACGCCAGAGCAGACGCACAGCGGAGAGGacagtgggagtgtgtgtgtgaatgaaagagTGAACAAATGTAGAGATTTAAAGGATGATCAACATTTCCTCATGCACCAAACTCATGCACATTTCCAAAACATGTTTTGATCCCCGGAGTCAGAAAGCAGGCTGCAGATATGCGTCCTAGATTCAATTTTAACAGTCACGATAGCATGGATTTCagtattgtttacaaatgtagtTAATCAGTCAGGACATGATTTGGTGTTGCACTGGAGCTTGTTagctgttagctacattagcctgtAGCTCCAGTACAAATCTAAAGAAGTAAACGTCAGACACTAAACATTTTTACCTGATcgactttgttttttttttttttcccctcacagccAGGTAAATGATGTGAAGCGAAGGAGGTGTGGAAGTGGTTCTGTCCCAAACAGAATGTAGTGTTTAAATCACACTTTCCTCATTATGTTTCTCATCTCATAGTTGTTGTGATGTTTCACCTCATTTCTCCCTGAgatttgttttctgtcttttaacACACCAGCCCAGGAAGGCCGTAGTGATTACACGGTGTGTTAAATGAGTTAGAAAGATAAACTCTGTAGTGAAATTATCCTGCAGTCACCCTGCACCTTCACAAATCTAAACAGAGACGGGTGATCAGTGAAATGTTCACCAGTGCCCACATTTTATTCGTTTAACCTACATTATTTCTGATCATTCATTATCGTTAATGGTTTCTCAGTAGCTGCGTTGTGAACATTTATCGCTTTTAGCATGCATTCACTTTCTATAAAtggtaaagtgcattatgggtattctgtacCCTGTAGAGTAATCAGTTGGACACTAACCATAAGCAGTGCATCAGTGGATTTTCACTATATGGACCATTTTAGATGAACCATCACATCTTCTCTGgttcccaacagccaatcagagcaaaCCTGGAGGCAGAAACAGTTATGATTGGTTAAGATGCCAAACAATGGACATTTTTTCAATTAGGTCACAGCAGGACAATTTCCTTTTATGTGACAAACCTGGAAAATAAACTGACTTTATGACTAAATTTTTCCAAATACTTCGGATCAGGGTGTTTAGCAAAAATATTCTAGTgctataaaatttttttatagcattaaaaaaaacacatcaagtCAGATGATCTAGTAAGGCAATTAGTTAGCTGAACACCAAGTGGTTAGCAAGACAGGATATTCAAGACAGGAAGAAAGATGTGTGAGGGCGCTGTTGTGCACGTTTAACTTACAATGGGGAGTCGAAaagggtgtgttttttttataaagaatatTGAAACACAGCTTATAGACCACGGCACTGTACAGGACTGAGCATGTTGCTATGATTACGGTTGGAAGCCTCAGCTGTAGCGcaccaacaaaacaaaaacgaaaaaaaaaaaaaaaaaacatgtttttatgcacA

Function

symbol description
rab1a Enables GTPase activity. Involved in several processes, including COPII-coated vesicle cargo loading; growth hormone secretion; and positive regulation of macromolecule metabolic process. Located in Golgi apparatus and extracellular exosome.

NR:

description
PREDICTED: ras-related protein Rab-1A-like isoform X2

GO: NA

KEGG:

id description
K07874 RAB1A; Ras-related protein Rab-1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931904.2 True 2362 mRNA 0.43 6 16118388 16126954

Neighbor

gene id symbol gene type direction distance location
sertad2a NA coding downstream 6516 16106095 ~ 16111872 (-)
peli1a LOC108258444 coding downstream 48802 16056944 ~ 16069586 (-)
LOC117596132 NA coding downstream 67201 16045728 ~ 16051187 (-)
LOC113537692 NA coding downstream 80413 16031999 ~ 16037975 (-)
LOC113537693 NA coding downstream 93877 16012272 ~ 16024511 (-)
pane1 cenpm coding upstream 19175 16146129 ~ 16150858 (-)
mri1 mri1,LOC107594353,LOC107703717,LOC106595636,LOC107700835 coding upstream 43869 16170823 ~ 16178495 (-)
cc2d1a cc2d1a coding upstream 52358 16179312 ~ 16200267 (-)
nanos3 NA coding upstream 80611 16207565 ~ 16208561 (-)
si:ch211-286b5.4 LOC108258440 coding upstream 82301 16209255 ~ 16216035 (-)
G376982 NA non-coding downstream 170309 15947648 ~ 15948079 (-)
G376961 NA non-coding downstream 234965 15881973 ~ 15883423 (-)
G376934 NA non-coding downstream 295883 15812366 ~ 15822505 (-)
G376840 NA non-coding downstream 338686 15778247 ~ 15779702 (-)
G376807 NA non-coding downstream 401442 15716192 ~ 15716946 (-)
G377087 NA non-coding upstream 38744 16165698 ~ 16169196 (-)
G377084 NA non-coding upstream 51656 16178610 ~ 16179122 (-)
G377125 NA non-coding upstream 136949 16263903 ~ 16265647 (-)
G377171 NA non-coding upstream 222423 16349377 ~ 16350060 (-)
G377172 NA non-coding upstream 223295 16350249 ~ 16350459 (-)
vps54 vps54,LOC107709616 other downstream 133429 15963876 ~ 15984959 (-)
khsrp khsrp other downstream 175658 15929753 ~ 15942730 (-)
G376956 NA other downstream 197835 15917628 ~ 15920553 (-)
dpy30 dpy30,LOC107684266 other downstream 660183 15412424 ~ 15458205 (-)
triobpa LOC108259073 other downstream 989132 15117512 ~ 15129256 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other upstream 25965 16152919 ~ 16164370 (-)
si:ch211-286b5.5 LOC108258470,LOC108443951,LOC103031617,LOC105901802,LOC101074561,LOC103154361,LOC100701095,LOC105012046,LOC107391594,LOC105938735 other upstream 89796 16216750 ~ 16221615 (-)
LOC113537389 NA other upstream 294307 16421261 ~ 16475431 (-)
si:dkey-76b14.2 LOC108258416,LOC105891053 other upstream 439299 16566253 ~ 16583137 (-)
slc25a10 slc25a10,LOC108411213,LOC107747133,LOC107712055,LOC107569289,LOC100693267 other upstream 494213 16621167 ~ 16741989 (-)

Expression


Co-expression Network