nanos3


Basic Information

Item Value
gene id nanos3
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 16207565 ~ 16208561 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931905.2
GTGCGGGGTCAGGGGAGGTGCAGGTGCGCGCTGATTGCTCCCCGCAGCAACACCCGCCGTTCACGCGCCATACGCGTGTGCGCTCCAGACTCGCCTACTTAAGCGCggtttcttgtttgtttgttttcccctCTTCTCCCCCTCTTCCCGATCACTTGCGATGGTGTTCTCTCTGCTGCGCTACATCCTGTCGGCTCACGGCTCCATGGAGTCCGAGGAGCAGCGCCACTTTCAGCCGTGGCGTGATTACATGGGTCTGGCGGACACGGTGCGTGCCATGCGGAGCTCGCGGCTCCCGGAAGCCTCTGGTCCGGAACCTCAGCAGGAGTTCAGCTTTACGCGTGAGATCTCTCCTCTGCAGGGCCACGATGGCGAGCTCCAGACCTCCCCCGAGCCTGAGATGTCGGAGGTCAGAGGAGGAGCGAAGGGGCGACTGAAATGCGGTCGTACCGGGACTACAGGgtctccacctcctcctccatcacctccatcACCATCAGCTCCTCCTGCGGTCGCTCCTCGCTCTGGAGACAAGTTCTGCAGCTTCTGCAAACACAACGGCGAGTCTGAAAGCGTGTTCACGTCGCACTGCCTGAAGGGCCGCGGTGGAGAGGTGCTGTGTCCTTACCTGCGCCGCTACGTGTGTCCGCTGTGCGGGGCGACGGGCGGCCGCGCGCACACCAAGCGCTTCTGCCCGCGCGTGGACAGCACGTACAGCTCCGTGTACACGCGGGCTCCCCGGTAAAACGCAAACACGCAGACACTGAAGCCTGCTTTCACACTCAGCACCACGCGGTAGGCTGTCCTTTACCTGGGAAGCTGATTAATAAGCTTTCAGAGTAAAAGCTTCACAGTTTGATCAGTGGTCTTTAAGATCCGCCTTATTATACACCTGGAAATGTAGATGTAGCATTTATGATGCACTCCAGAGAAATGATAAGGTGCCTTTATTTacgagtgtgtgagagcagaaGGTTGCacgtgctaaaaaaaaaaa

Function

GO:

id name namespace
GO:0036099 female germ-line stem cell population maintenance biological_process
GO:0001555 oocyte growth biological_process
GO:0005488 binding molecular_function

KEGG:

id description
K18761 NANOS3, NOS3; protein nanos 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931905.2 True 997 mRNA 0.58 1 16207565 16208561

Neighbor

gene id symbol gene type direction distance location
cc2d1a cc2d1a coding downstream 7298 16179312 ~ 16200267 (-)
mri1 mri1,LOC107594353,LOC107703717,LOC106595636,LOC107700835 coding downstream 29070 16170823 ~ 16178495 (-)
pane1 cenpm coding downstream 56707 16146129 ~ 16150858 (-)
rab1aa rab1a,LOC107676578,LOC105021598,LOC107666439,LOC103035225,LOC108436370 coding downstream 80611 16118388 ~ 16126954 (-)
sertad2a NA coding downstream 95693 16106095 ~ 16111872 (-)
si:ch211-286b5.4 LOC108258440 coding upstream 694 16209255 ~ 16216035 (-)
LOC113537690 NA coding upstream 16246 16224807 ~ 16236147 (-)
LOC113537406 LOC108258437 coding upstream 29648 16238209 ~ 16246291 (-)
dnajb1b dnajb1 coding upstream 132676 16341237 ~ 16348457 (-)
ndufb7 ndufb7,LOC107573602,LOC107694602 coding upstream 159937 16368498 ~ 16373207 (-)
G377084 NA non-coding downstream 28443 16178610 ~ 16179122 (-)
G377087 NA non-coding downstream 38369 16165698 ~ 16169196 (-)
G376982 NA non-coding downstream 259486 15947648 ~ 15948079 (-)
G376961 NA non-coding downstream 324142 15881973 ~ 15883423 (-)
G376934 NA non-coding downstream 385060 15812366 ~ 15822505 (-)
G377125 NA non-coding upstream 55342 16263903 ~ 16265647 (-)
G377171 NA non-coding upstream 140816 16349377 ~ 16350060 (-)
G377172 NA non-coding upstream 141688 16350249 ~ 16350459 (-)
G377191 NA non-coding upstream 180533 16389094 ~ 16390803 (-)
G377244 NA non-coding upstream 279229 16487790 ~ 16488131 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other downstream 43195 16152919 ~ 16164370 (-)
vps54 vps54,LOC107709616 other downstream 222606 15963876 ~ 15984959 (-)
khsrp khsrp other downstream 264835 15929753 ~ 15942730 (-)
G376956 NA other downstream 287012 15917628 ~ 15920553 (-)
dpy30 dpy30,LOC107684266 other downstream 749360 15412424 ~ 15458205 (-)
si:ch211-286b5.5 LOC108258470,LOC108443951,LOC103031617,LOC105901802,LOC101074561,LOC103154361,LOC100701095,LOC105012046,LOC107391594,LOC105938735 other upstream 8189 16216750 ~ 16221615 (-)
LOC113537389 NA other upstream 212700 16421261 ~ 16475431 (-)
si:dkey-76b14.2 LOC108258416,LOC105891053 other upstream 357692 16566253 ~ 16583137 (-)
slc25a10 slc25a10,LOC108411213,LOC107747133,LOC107712055,LOC107569289,LOC100693267 other upstream 412606 16621167 ~ 16741989 (-)
G377416 LOC108258724 other upstream 636451 16845012 ~ 16851663 (-)

Expression


Co-expression Network