avpi1


Basic Information

Item Value
gene id avpi1
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15886599 ~ 15894995 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931906.2
AAGAActatggtgtgaaaaaaaatgatccGCTGACACAGAAAACCGAGAAAcactaaaccacacacacacacccacagagtTTAATCATTCTCAAACTCAGTAATACAGAGGATTTTAAAGATCCAGGCGTTTCCGGATGAAACCGCGGGGGTTTAGAGGATAAAGTCACCGCTCGGGACACTAAACGAGCTGGGGATGGAGGAGGTCGGTGTCAGCGCTGCCGCAGTGCTGCCCGGAGCACCCCAGCCCACGTTCTGTCGGACCTCTGCGTCCGAGCGCCGCATGCGCAAGTCCGGCTCAGCGAACATCTTCCAGGGCGTGAACCTCCGGCAGCTCAGGCGCCTCTTCCACTCGGCCGGGGAACCAGACGCCGAGCAGAAAGCCAGACAGGTCTGGAGGAACCGGAGAAGGGCTGAAGGAGACGAGGAGGATGGGGACGGAGATGAAGtcgaggaggaagaggaggaggatgaagggtTGGCGCAGGCGCTGGTGGGGCTCCGGGTCAGGGCGAGGAACCGCAGCGGGATCCGAGCTGAGACAAGCAGAGGGATCCGGGCGTTCGGGCACAGCAGAGTGAACGAGCGGACGCCATCCGAGGTCAcggctgatgatgatgatgtcacggCTCGGGGAGCCTGCGTGGGGCAGGGGGCCAAGTCATGTGACCCAGGGGACGAGGAAGACGTGCGGGCGACGTGGAGCCGGGACGAGAAAGATCCGGAACGCTACCTGCACCGAATACGACACTGACATCGCAGCTCGCTATGCGAAAACTACATAAACACCACGATGTAGCTGCAACACTAAACGCGATTCGCCGTAAGGGAGCTGAAACGTGAACACTATGATGGAGAGACACTACAGAGCTGCtcatgtgtgtttactgcaaaaaaaaaaatgatttaacaaATATGACCTGACAAAAACATTACTACACTAGTTTACTACAAAAACATTACTGCGTTAACATGTAACACTATCCGGCATGTGCTGTTAATCGGTTATACGATATATCGTGACATTTAACACATATTACTGATATCGTGCACACTTTGATAATGACATCACaacttgtgttttatttaggGGAGGTCTTGTGCTGCGGAGCAAACTATTTTTGGACAAATTTTGGACATATTTAAGGCAGTACACTACAGGACGATGATGCATAGTGAAGATGAAATTAGACAAATTTCATCTATGGTTAAAGATGCTGCTAAAATAATAAGGAGAAATAAAATTGTGGCAAAAACAATTTGGTTGTAGCacttttggtgcttggacccctaacaTCCTGAAACTTATTTTTAGtcagttaatattttttgtgtatCTTCTATCAAAATGTAGCGTGTTTTACAATCCAAATTCGGAATCTGAATTTAGACGCATTTCTGGTTCCTTTTTTGACTCATGAGGTTTCTCGAATtaggaaagaaaaatgtgttttggttCCATAtcatatgattattattattattattatcattataattattattaaaataatgtgtttgCTTCACGCAATCTGGTGATGTCACTGCACCCATTTAACCAAAATTACAGGTTTAGAACAGTATATAGTTTTTATGCACCGTACCAATGTCATTACAGGTCTAACAAACTTCTTCCTGAGGCTCTTTTATGTATTAAAGTCTTCGTGCGTTATCAGCATTGCGATAACGAATAACAAACGATACATCGTGCTGCTCTGATTCTCAGCACATGCCTCACTGTGTAATACTCTTAATACtcagtttaaataaacacaaaccgCAGGCTGGAGGTTGATATTTTCAAGGATTTTGGTGGACATCTTGCCAACCTCAGAAAcagcctgattttttttcttcttcctctggaCCAGCCATAACAAGCGTCTTTACTCTAAAATGGACGACTTCCCCGGTCTCCGTGTGGACGTGTAGTTTGAGCTGGACCGCCTGGTAGTACTTGAGTTTGACGTCGTCGTCTTCTTCTGTAGCATGTTAGCAATATACACTCCAACGTTGGGAAAGTTCTGATGATGAATATGCATCGAAGAGCAATCGCTCATTCTTCcacattacagtttttaatcatGTGTACTGAGATAGTGAGTAAATCAACAGActccatgatgatgatgatgatgatgatgtaatgtgaCATTATAATAGTGTAGAAATAATATCTAGCTtcactgtagtttttttttttttctccgttgtggagtgaaataaatataagtgAAAGCAGTTCTAACAGGAAACGTAGCTGGCTGTATTTTCcggacattttagaaaaaaaaggttcttcaggaGGTCTTTGGGGGGTTAATAGTTGCGTCGGTTGTTGCAGGATTCCCAAGACACAGTACTCTTTAAAAGTGCTaaatggagctttttttttttcccactaaaaGGAATCATGTTATACATATTGTACGAACAcataatttacagtattttacagtagCCAGAGTACTCCAGGGATTACGGTAGTTTGCTTATTACTTATT

Function

NR:

description
PREDICTED: uncharacterized protein LOC107730030

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931906.2 True 2504 mRNA 0.44 3 15886599 15894995

Neighbor

gene id symbol gene type direction distance location
cdc25d LOC108258441 coding downstream 17045 15859404 ~ 15869554 (-)
pgam1b pgam1b,pgam1a,LOC108258456,LOC107700858,LOC103038634,LOC107598490,LOC107703810,LOC108436383 coding downstream 28282 15853218 ~ 15858317 (-)
exosc1 exosc1,LOC107598491,LOC107700859 coding downstream 34476 15842505 ~ 15852123 (-)
LOC113537446 NA coding downstream 73144 15809917 ~ 15813455 (-)
LOC113537452 NA coding downstream 76789 15800222 ~ 15809810 (-)
slc25a23a slc25a23a,LOC108258471,LOC103026535,LOC107747161,LOC107594260 coding upstream 50856 15945851 ~ 15955280 (-)
LOC113537394 NA coding upstream 91792 15986787 ~ 15999994 (-)
LOC113537693 NA coding upstream 117277 16012272 ~ 16024511 (-)
LOC113537692 NA coding upstream 137004 16031999 ~ 16037975 (-)
LOC117596132 NA coding upstream 150733 16045728 ~ 16051187 (-)
G376961 NA non-coding downstream 3176 15881973 ~ 15883423 (-)
G376934 NA non-coding downstream 64094 15812366 ~ 15822505 (-)
G376840 NA non-coding downstream 106897 15778247 ~ 15779702 (-)
G376807 NA non-coding downstream 169653 15716192 ~ 15716946 (-)
G376786 NA non-coding downstream 203509 15681161 ~ 15683090 (-)
G376982 NA non-coding upstream 52653 15947648 ~ 15948079 (-)
G377087 NA non-coding upstream 270703 16165698 ~ 16169196 (-)
G377084 NA non-coding upstream 283615 16178610 ~ 16179122 (-)
G377125 NA non-coding upstream 368908 16263903 ~ 16265647 (-)
G377171 NA non-coding upstream 454382 16349377 ~ 16350060 (-)
dpy30 dpy30,LOC107684266 other downstream 428394 15412424 ~ 15458205 (-)
triobpa LOC108259073 other downstream 757343 15117512 ~ 15129256 (-)
akt3b akt3b,LOC108259077,LOC108438606,LOC107594289,LOC107703832,LOC107729704,LOC101071975 other downstream 925547 14910662 ~ 14961052 (-)
b3gnt2a LOC108259010 other downstream 1136865 14740132 ~ 14749734 (-)
ifngr1 NA other downstream 1173953 14697239 ~ 14712646 (-)
G376956 NA other upstream 22633 15917628 ~ 15920553 (-)
khsrp khsrp other upstream 34758 15929753 ~ 15942730 (-)
vps54 vps54,LOC107709616 other upstream 68881 15963876 ~ 15984959 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other upstream 257924 16152919 ~ 16164370 (-)
si:ch211-286b5.5 LOC108258470,LOC108443951,LOC103031617,LOC105901802,LOC101074561,LOC103154361,LOC100701095,LOC105012046,LOC107391594,LOC105938735 other upstream 321755 16216750 ~ 16221615 (-)

Expression


Co-expression Network