LOC113537452


Basic Information

Item Value
gene id LOC113537452
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 15800222 ~ 15809810 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026931920.2
TTTAGGAGCACAGTATAACACATGATCTTTAAGGTAGAGGTGTGCTAGAGTGGGCGTGGACATAAGGCTGCCAATCTTCATCAATCAACCAATTGAGCAGCTGCTTATACTCATCAATGCTGTGTTTAGATAAAGCTTCCACCCAGTTTcttgaggcacatcaagacatAGCATTCCCTTACTTTAATGGACAAAGAGATCagCAGGGTGTCAGCTGTAACCTGATTTAGTCAGCCCGCATCACTCAGAAAGGACTGACACAGAGCACAAAGGTGCATCAGAATAAGTGCACGTTAGTCACCACCTCTGCTTCAACATGGCTTTTGTAATCAATCAGTGTGCACCTCCGCCTGTGATCATCGAGGTCGTCCAGGCTCAGCCAGCTGTAGCAGTGATCCAGCCTCCTGGCCCTGTGGTGGTTCAGTCTCCTATGAAATCCCTACCCGCATCAACGAGGTGTGGTTTCTGCCGTCAGCACATTGTCACAATGACTCGACCCATCAATGGACTCCTCACCTGGGTGGTTTTCGGGGCACTCTTCATCTTGCTCATATGGCCATTCTGCTTGATTCCTTTCTGCCTGAGGTCCTGCAAGGACATCGAGCACACCTGCCCCATGTGCAGGAACGTTCTCTACATTCACAAACGGATGTGAGACGTttcacacaggagaacctggaaaaTATCATAAACCCAAATGACGGATGTAGAAGAAGtaataatcttgtttttttcttaatatgtaATTAagaatgtataatgtaattAGTTATACCATTAAAAATAGTATTCAAAgaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026931920.2 True 799 mRNA 0.45 5 15800222 15809810

Neighbor

gene id symbol gene type direction distance location
LOC113537443 NA coding downstream 11086 15786249 ~ 15789136 (-)
tekt4 tekt4 coding downstream 72475 15719638 ~ 15727747 (-)
pkd1a pkd1 coding downstream 165775 15550926 ~ 15634447 (-)
nthl1 NA coding downstream 298695 15497939 ~ 15501527 (-)
LOC113537512 slc9a3r2 coding downstream 305238 15482534 ~ 15494984 (-)
LOC113537446 NA coding upstream 107 15809917 ~ 15813455 (-)
exosc1 exosc1,LOC107598491,LOC107700859 coding upstream 32695 15842505 ~ 15852123 (-)
pgam1b pgam1b,pgam1a,LOC108258456,LOC107700858,LOC103038634,LOC107598490,LOC107703810,LOC108436383 coding upstream 43408 15853218 ~ 15858317 (-)
cdc25d LOC108258441 coding upstream 49594 15859404 ~ 15869554 (-)
avpi1 NA coding upstream 76789 15886599 ~ 15894995 (-)
G376840 NA non-coding downstream 20520 15778247 ~ 15779702 (-)
G376807 NA non-coding downstream 83276 15716192 ~ 15716946 (-)
G376786 NA non-coding downstream 117132 15681161 ~ 15683090 (-)
G376763 NA non-coding downstream 121051 15674807 ~ 15679171 (-)
G376758 NA non-coding downstream 147201 15611622 ~ 15653021 (-)
G376934 NA non-coding upstream 2556 15812366 ~ 15822505 (-)
G376961 NA non-coding upstream 72163 15881973 ~ 15883423 (-)
G376982 NA non-coding upstream 137838 15947648 ~ 15948079 (-)
G377087 NA non-coding upstream 355888 16165698 ~ 16169196 (-)
G377084 NA non-coding upstream 368800 16178610 ~ 16179122 (-)
dpy30 dpy30,LOC107684266 other downstream 342017 15412424 ~ 15458205 (-)
triobpa LOC108259073 other downstream 670966 15117512 ~ 15129256 (-)
akt3b akt3b,LOC108259077,LOC108438606,LOC107594289,LOC107703832,LOC107729704,LOC101071975 other downstream 839170 14910662 ~ 14961052 (-)
b3gnt2a LOC108259010 other downstream 1050488 14740132 ~ 14749734 (-)
ifngr1 NA other downstream 1087576 14697239 ~ 14712646 (-)
G376956 NA other upstream 107818 15917628 ~ 15920553 (-)
khsrp khsrp other upstream 119943 15929753 ~ 15942730 (-)
vps54 vps54,LOC107709616 other upstream 154066 15963876 ~ 15984959 (-)
zgc:158803 LOC108258445,LOC108411937,LOC102793736,LOC100697878,LOC101478282,LOC102307186 other upstream 343109 16152919 ~ 16164370 (-)
si:ch211-286b5.5 LOC108258470,LOC108443951,LOC103031617,LOC105901802,LOC101074561,LOC103154361,LOC100701095,LOC105012046,LOC107391594,LOC105938735 other upstream 406940 16216750 ~ 16221615 (-)

Expression


Co-expression Network